2024-12-08 17:45:30,435 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 17:45:30,747 Running on GPU
2024-12-08 17:45:34,629 Found 6 citations for tools or databases
2024-12-08 17:45:34,629 Query 1/1: TNFAIP3_VEPH1 (length 1623)
2024-12-08 17:45:34,898 Sleeping for 5s. Reason: PENDING
2024-12-08 17:45:40,158 Sleeping for 7s. Reason: RUNNING
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2024-12-08 17:46:47,470 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:46:54,727 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:47:01,987 Sleeping for 8s. Reason: RUNNING
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2024-12-08 17:47:17,506 Sleeping for 5s. Reason: RUNNING
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2024-12-08 17:47:38,289 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:47:45,544 Sleeping for 5s. Reason: RUNNING
2024-12-08 17:47:52,132 Sleeping for 7s. Reason: PENDING
2024-12-08 17:47:59,389 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:48:06,661 Sleeping for 8s. Reason: RUNNING
2024-12-08 17:48:14,923 Sleeping for 10s. Reason: RUNNING
2024-12-08 17:48:25,182 Sleeping for 6s. Reason: RUNNING
2024-12-08 17:48:31,442 Sleeping for 6s. Reason: RUNNING
2024-12-08 17:48:37,851 Sleeping for 10s. Reason: RUNNING
2024-12-08 17:48:48,110 Sleeping for 8s. Reason: RUNNING
2024-12-08 17:48:56,363 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:49:03,624 Sleeping for 7s. Reason: RUNNING
2024-12-08 17:49:10,879 Sleeping for 6s. Reason: RUNNING
2024-12-08 17:49:17,144 Sleeping for 6s. Reason: RUNNING
2024-12-08 17:49:23,402 Sleeping for 10s. Reason: RUNNING
2024-12-08 17:49:35,956 Setting max_seq=508, max_extra_seq=2048
2024-12-08 17:53:45,181 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=60.1 pTM=0.388 ipTM=0.259
2024-12-08 17:55:07,374 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=58.9 pTM=0.361 ipTM=0.199 tol=18.4
2024-12-08 17:56:29,781 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59.6 pTM=0.357 ipTM=0.194 tol=9.88
2024-12-08 17:57:52,330 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=59.9 pTM=0.352 ipTM=0.19 tol=7.32
2024-12-08 17:59:14,908 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60 pTM=0.357 ipTM=0.209 tol=7.16
2024-12-08 18:00:37,454 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.9 pTM=0.355 ipTM=0.205 tol=16.4
2024-12-08 18:01:59,916 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.3 pTM=0.356 ipTM=0.202 tol=9.16
2024-12-08 18:03:22,341 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=60.5 pTM=0.354 ipTM=0.2 tol=8.06
2024-12-08 18:04:44,793 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=60.6 pTM=0.354 ipTM=0.195 tol=3.98
2024-12-08 18:06:07,179 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.1 pTM=0.354 ipTM=0.197 tol=4.01
2024-12-08 18:07:29,633 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60.1 pTM=0.352 ipTM=0.199 tol=4.72
2024-12-08 18:08:52,010 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=60.2 pTM=0.354 ipTM=0.193 tol=5.1
2024-12-08 18:10:14,455 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=59.8 pTM=0.354 ipTM=0.195 tol=8.92
2024-12-08 18:11:36,889 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=60.4 pTM=0.356 ipTM=0.196 tol=8.95
2024-12-08 18:12:59,349 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=60 pTM=0.354 ipTM=0.194 tol=6.34
2024-12-08 18:14:21,761 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.2 pTM=0.353 ipTM=0.195 tol=5.04
2024-12-08 18:15:44,157 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60 pTM=0.352 ipTM=0.192 tol=5.08
2024-12-08 18:17:06,536 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=60.2 pTM=0.354 ipTM=0.194 tol=5.12
2024-12-08 18:18:28,975 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=60.5 pTM=0.352 ipTM=0.193 tol=6.9
2024-12-08 18:19:51,335 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=60.2 pTM=0.353 ipTM=0.194 tol=5.02
2024-12-08 18:21:13,807 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60 pTM=0.351 ipTM=0.197 tol=6.5
2024-12-08 18:22:36,272 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=60.2 pTM=0.352 ipTM=0.197 tol=6.18
2024-12-08 18:23:58,677 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=59.8 pTM=0.354 ipTM=0.196 tol=11.3
2024-12-08 18:25:21,073 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.1 pTM=0.355 ipTM=0.2 tol=8.11
2024-12-08 18:26:43,549 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.5 pTM=0.352 ipTM=0.197 tol=6.69
2024-12-08 18:28:05,977 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.2 pTM=0.354 ipTM=0.2 tol=4.72
2024-12-08 18:29:28,430 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.1 pTM=0.354 ipTM=0.202 tol=4
2024-12-08 18:30:50,891 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60 pTM=0.352 ipTM=0.193 tol=4.41
2024-12-08 18:32:13,318 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=59.9 pTM=0.35 ipTM=0.191 tol=6.04
2024-12-08 18:33:35,692 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=60 pTM=0.354 ipTM=0.197 tol=5.93
2024-12-08 18:34:58,100 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=60 pTM=0.355 ipTM=0.202 tol=7.97
2024-12-08 18:34:58,102 alphafold2_multimer_v3_model_1_seed_000 took 2718.7s (30 recycles)
2024-12-08 18:36:22,067 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=60.1 pTM=0.375 ipTM=0.224
2024-12-08 18:37:44,631 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62 pTM=0.36 ipTM=0.191 tol=11.5
2024-12-08 18:39:07,172 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=61.6 pTM=0.36 ipTM=0.204 tol=9.7
2024-12-08 18:40:29,752 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63 pTM=0.361 ipTM=0.199 tol=6.91
2024-12-08 18:41:52,339 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.8 pTM=0.356 ipTM=0.184 tol=6.95
2024-12-08 18:43:14,899 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.5 pTM=0.366 ipTM=0.217 tol=10.4
2024-12-08 18:44:37,439 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.5 pTM=0.357 ipTM=0.189 tol=6.65
2024-12-08 18:46:00,008 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.2 pTM=0.356 ipTM=0.186 tol=5.17
2024-12-08 18:47:22,608 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=63 pTM=0.355 ipTM=0.186 tol=4.29
2024-12-08 18:48:45,227 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63 pTM=0.365 ipTM=0.187 tol=6.99
2024-12-08 18:50:07,789 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.2 pTM=0.354 ipTM=0.188 tol=4.99
2024-12-08 18:51:30,289 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.3 pTM=0.358 ipTM=0.19 tol=3.74
2024-12-08 18:52:52,820 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.3 pTM=0.359 ipTM=0.193 tol=5.27
2024-12-08 18:54:15,407 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.3 pTM=0.356 ipTM=0.186 tol=4.04
2024-12-08 18:55:38,014 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.2 pTM=0.355 ipTM=0.184 tol=3.78
2024-12-08 18:57:00,595 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=62.9 pTM=0.361 ipTM=0.2 tol=5.96
2024-12-08 18:58:23,246 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.2 pTM=0.354 ipTM=0.184 tol=6.43
2024-12-08 18:59:45,865 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63.2 pTM=0.356 ipTM=0.19 tol=6.02
2024-12-08 19:01:08,457 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.1 pTM=0.356 ipTM=0.19 tol=6.17
2024-12-08 19:02:31,052 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.3 pTM=0.355 ipTM=0.186 tol=5.42
2024-12-08 19:03:53,677 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63.3 pTM=0.356 ipTM=0.189 tol=5.34
2024-12-08 19:05:16,310 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63.2 pTM=0.355 ipTM=0.186 tol=3.86
2024-12-08 19:06:38,913 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=62.9 pTM=0.355 ipTM=0.185 tol=7.27
2024-12-08 19:08:01,531 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.1 pTM=0.358 ipTM=0.192 tol=5.26
2024-12-08 19:09:24,183 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63.2 pTM=0.357 ipTM=0.187 tol=3.41
2024-12-08 19:10:46,862 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=62.9 pTM=0.357 ipTM=0.189 tol=5.4
2024-12-08 19:12:09,461 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=62.7 pTM=0.363 ipTM=0.191 tol=5.74
2024-12-08 19:13:32,069 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=62.9 pTM=0.36 ipTM=0.193 tol=6.04
2024-12-08 19:14:54,754 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63 pTM=0.356 ipTM=0.187 tol=7.62
2024-12-08 19:16:17,308 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.1 pTM=0.363 ipTM=0.197 tol=6.27
2024-12-08 19:17:39,863 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=62.8 pTM=0.36 ipTM=0.192 tol=4.98
2024-12-08 19:17:39,865 alphafold2_multimer_v3_model_2_seed_000 took 2560.2s (30 recycles)
2024-12-08 19:19:03,946 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=59.5 pTM=0.407 ipTM=0.305
2024-12-08 19:20:26,495 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60.4 pTM=0.435 ipTM=0.393 tol=12.6
2024-12-08 19:21:49,023 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=60.3 pTM=0.413 ipTM=0.327 tol=8.21
2024-12-08 19:23:11,528 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60.7 pTM=0.426 ipTM=0.382 tol=10.3
2024-12-08 19:24:34,070 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.1 pTM=0.406 ipTM=0.323 tol=9.6
2024-12-08 19:25:56,572 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=61.1 pTM=0.413 ipTM=0.357 tol=4.58
2024-12-08 19:27:19,096 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=61.3 pTM=0.412 ipTM=0.343 tol=6.16
2024-12-08 19:28:41,538 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=61.7 pTM=0.425 ipTM=0.373 tol=5.24
2024-12-08 19:30:03,878 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=61.8 pTM=0.432 ipTM=0.374 tol=3.54
2024-12-08 19:31:26,214 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61.7 pTM=0.436 ipTM=0.388 tol=2.53
2024-12-08 19:32:48,580 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=61.9 pTM=0.433 ipTM=0.38 tol=2.2
2024-12-08 19:34:10,942 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=61.8 pTM=0.443 ipTM=0.404 tol=2.48
2024-12-08 19:35:33,292 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=62 pTM=0.437 ipTM=0.391 tol=3.75
2024-12-08 19:36:55,617 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=62.1 pTM=0.448 ipTM=0.408 tol=4.38
2024-12-08 19:38:17,961 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.8 pTM=0.439 ipTM=0.395 tol=3.12
2024-12-08 19:39:40,283 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61.8 pTM=0.437 ipTM=0.392 tol=2.86
2024-12-08 19:41:02,593 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61.9 pTM=0.435 ipTM=0.382 tol=4.74
2024-12-08 19:42:24,906 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.8 pTM=0.438 ipTM=0.391 tol=4.1
2024-12-08 19:43:47,247 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.8 pTM=0.431 ipTM=0.375 tol=3.93
2024-12-08 19:45:09,632 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61.8 pTM=0.434 ipTM=0.381 tol=1.6
2024-12-08 19:46:32,045 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=61.7 pTM=0.431 ipTM=0.375 tol=3.51
2024-12-08 19:47:54,407 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61.7 pTM=0.436 ipTM=0.393 tol=1.77
2024-12-08 19:49:16,794 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=61.8 pTM=0.427 ipTM=0.368 tol=1.27
2024-12-08 19:50:39,253 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61.8 pTM=0.434 ipTM=0.384 tol=3.91
2024-12-08 19:52:01,666 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61.7 pTM=0.424 ipTM=0.351 tol=5.12
2024-12-08 19:53:24,071 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=61.9 pTM=0.431 ipTM=0.377 tol=1.99
2024-12-08 19:54:46,414 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=61.6 pTM=0.42 ipTM=0.353 tol=4.07
2024-12-08 19:56:08,769 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=61.8 pTM=0.43 ipTM=0.372 tol=2.16
2024-12-08 19:57:31,081 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=61.7 pTM=0.416 ipTM=0.343 tol=3.77
2024-12-08 19:58:53,380 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61.7 pTM=0.423 ipTM=0.364 tol=3.82
2024-12-08 20:00:15,722 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.6 pTM=0.411 ipTM=0.324 tol=3.85
2024-12-08 20:00:15,723 alphafold2_multimer_v3_model_3_seed_000 took 2554.3s (30 recycles)
2024-12-08 20:01:39,839 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=58.2 pTM=0.359 ipTM=0.199
2024-12-08 20:03:02,427 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=59.3 pTM=0.36 ipTM=0.271 tol=16.2
2024-12-08 20:04:24,891 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.9 pTM=0.431 ipTM=0.395 tol=13.6
2024-12-08 20:05:47,389 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=61.2 pTM=0.434 ipTM=0.387 tol=7.28
2024-12-08 20:07:09,852 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=61.6 pTM=0.451 ipTM=0.415 tol=6.62
2024-12-08 20:08:32,271 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=61.6 pTM=0.46 ipTM=0.431 tol=4.74
2024-12-08 20:09:54,730 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=61.8 pTM=0.468 ipTM=0.449 tol=6.16
2024-12-08 20:11:17,122 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=62.1 pTM=0.473 ipTM=0.448 tol=2.65
2024-12-08 20:12:39,538 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=61.7 pTM=0.472 ipTM=0.456 tol=4.16
2024-12-08 20:14:01,964 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=62 pTM=0.472 ipTM=0.447 tol=3.65
2024-12-08 20:15:24,376 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=61.9 pTM=0.474 ipTM=0.455 tol=1.54
2024-12-08 20:16:46,795 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=62 pTM=0.472 ipTM=0.45 tol=3.21
2024-12-08 20:18:09,215 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=62 pTM=0.476 ipTM=0.458 tol=3.4
2024-12-08 20:19:31,654 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=62.2 pTM=0.474 ipTM=0.449 tol=1.88
2024-12-08 20:20:54,077 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=62 pTM=0.474 ipTM=0.458 tol=9.64
2024-12-08 20:22:16,392 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=62.2 pTM=0.486 ipTM=0.473 tol=6.07
2024-12-08 20:23:38,627 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=62.2 pTM=0.486 ipTM=0.483 tol=3.38
2024-12-08 20:25:00,791 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=62.3 pTM=0.488 ipTM=0.483 tol=1.58
2024-12-08 20:26:23,068 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=62.3 pTM=0.489 ipTM=0.492 tol=3.44
2024-12-08 20:27:45,348 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=62.6 pTM=0.491 ipTM=0.49 tol=3.82
2024-12-08 20:29:07,668 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=62.4 pTM=0.495 ipTM=0.49 tol=3.62
2024-12-08 20:30:30,034 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=62.5 pTM=0.493 ipTM=0.489 tol=3.24
2024-12-08 20:31:52,437 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=62.5 pTM=0.494 ipTM=0.49 tol=1.85
2024-12-08 20:33:14,801 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=62.6 pTM=0.491 ipTM=0.489 tol=3.09
2024-12-08 20:34:37,169 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=62.3 pTM=0.488 ipTM=0.484 tol=3.5
2024-12-08 20:35:59,538 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=62.6 pTM=0.491 ipTM=0.49 tol=1.04
2024-12-08 20:37:21,916 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=62.3 pTM=0.489 ipTM=0.487 tol=3.09
2024-12-08 20:38:44,344 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=62.5 pTM=0.493 ipTM=0.492 tol=1.23
2024-12-08 20:40:06,773 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=62.2 pTM=0.487 ipTM=0.485 tol=3
2024-12-08 20:41:29,202 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=62.5 pTM=0.491 ipTM=0.49 tol=3.28
2024-12-08 20:42:51,515 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=62.6 pTM=0.492 ipTM=0.49 tol=2.12
2024-12-08 20:42:51,516 alphafold2_multimer_v3_model_4_seed_000 took 2554.2s (30 recycles)
2024-12-08 20:44:15,562 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=56.7 pTM=0.368 ipTM=0.2
2024-12-08 20:45:38,180 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=58.3 pTM=0.354 ipTM=0.186 tol=13.6
2024-12-08 20:47:00,730 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=59.5 pTM=0.405 ipTM=0.342 tol=13.7
2024-12-08 20:48:23,318 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.4 pTM=0.371 ipTM=0.233 tol=6.98
2024-12-08 20:49:45,939 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.7 pTM=0.355 ipTM=0.197 tol=10.4
2024-12-08 20:51:08,511 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=60.5 pTM=0.41 ipTM=0.345 tol=8.79
2024-12-08 20:52:31,088 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=60.4 pTM=0.356 ipTM=0.207 tol=4.84
2024-12-08 20:53:53,767 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=60.1 pTM=0.353 ipTM=0.197 tol=7.12
2024-12-08 20:55:16,427 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.2 pTM=0.354 ipTM=0.199 tol=5.79
2024-12-08 20:56:39,027 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.9 pTM=0.353 ipTM=0.205 tol=7.58
2024-12-08 20:58:01,668 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=60.3 pTM=0.354 ipTM=0.192 tol=6.05
2024-12-08 20:59:24,302 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=60 pTM=0.354 ipTM=0.189 tol=11.9
2024-12-08 21:00:46,843 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=60.2 pTM=0.363 ipTM=0.207 tol=9.16
2024-12-08 21:02:09,233 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=61.1 pTM=0.404 ipTM=0.325 tol=6.12
2024-12-08 21:03:31,542 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61.7 pTM=0.436 ipTM=0.382 tol=5.45
2024-12-08 21:04:53,828 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=61.6 pTM=0.442 ipTM=0.401 tol=7.13
2024-12-08 21:06:16,110 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=61.9 pTM=0.46 ipTM=0.439 tol=4.79
2024-12-08 21:07:38,389 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.3 pTM=0.482 ipTM=0.466 tol=3.39
2024-12-08 21:09:00,628 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.4 pTM=0.483 ipTM=0.478 tol=2.51
2024-12-08 21:10:22,891 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.3 pTM=0.49 ipTM=0.476 tol=1.88
2024-12-08 21:11:45,220 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.4 pTM=0.489 ipTM=0.487 tol=1.96
2024-12-08 21:13:07,515 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.5 pTM=0.496 ipTM=0.485 tol=2.74
2024-12-08 21:14:29,771 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.4 pTM=0.492 ipTM=0.484 tol=2.83
2024-12-08 21:15:52,046 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.4 pTM=0.492 ipTM=0.48 tol=3.64
2024-12-08 21:17:14,370 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=62.5 pTM=0.484 ipTM=0.473 tol=3.99
2024-12-08 21:18:36,696 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.5 pTM=0.489 ipTM=0.479 tol=2.23
2024-12-08 21:19:58,978 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.5 pTM=0.487 ipTM=0.479 tol=1.85
2024-12-08 21:21:21,280 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.4 pTM=0.493 ipTM=0.485 tol=2
2024-12-08 21:22:43,572 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.6 pTM=0.489 ipTM=0.485 tol=1.75
2024-12-08 21:24:05,902 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.8 pTM=0.495 ipTM=0.488 tol=1.76
2024-12-08 21:25:28,182 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.7 pTM=0.492 ipTM=0.486 tol=1.33
2024-12-08 21:25:28,184 alphafold2_multimer_v3_model_5_seed_000 took 2555.1s (30 recycles)
2024-12-08 21:25:29,725 reranking models by 'multimer' metric
2024-12-08 21:25:31,613 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 21:30:03,980 Relaxation took 274.3s
2024-12-08 21:30:03,980 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=62.6 pTM=0.492 ipTM=0.49
2024-12-08 21:34:14,597 Relaxation took 250.6s
2024-12-08 21:34:14,598 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.7 pTM=0.492 ipTM=0.486
2024-12-08 21:38:46,215 Relaxation took 271.6s
2024-12-08 21:38:46,216 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.6 pTM=0.411 ipTM=0.324
2024-12-08 21:43:22,267 Relaxation took 276.0s
2024-12-08 21:43:22,269 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=60 pTM=0.355 ipTM=0.202
2024-12-08 21:47:49,156 Relaxation took 266.9s
2024-12-08 21:47:49,156 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=62.8 pTM=0.36 ipTM=0.192
2024-12-08 21:47:52,913 Done