2024-12-08 18:40:22,289 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 18:40:22,588 Running on GPU
2024-12-08 18:40:24,976 Found 6 citations for tools or databases
2024-12-08 18:40:24,977 Query 1/1: TRAF2_TBK1 (length 1230)
2024-12-08 18:40:25,259 Sleeping for 6s. Reason: PENDING
2024-12-08 18:40:31,516 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:40:40,772 Sleeping for 9s. Reason: RUNNING
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2024-12-08 18:41:06,555 Sleeping for 6s. Reason: RUNNING
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2024-12-08 18:41:19,069 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:41:28,332 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:41:36,595 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:41:42,853 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:41:53,113 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:41:58,376 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:42:04,641 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:42:13,900 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:42:21,161 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:42:26,412 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:42:34,670 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:42:41,925 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:42:49,192 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:42:58,450 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:43:07,711 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:43:16,975 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:43:26,239 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:43:35,494 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:43:43,752 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:43:51,010 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:43:56,268 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:44:08,202 Sleeping for 8s. Reason: PENDING
2024-12-08 18:44:16,466 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:44:24,734 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:44:33,992 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:44:39,258 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:44:44,520 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:44:54,774 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:45:05,035 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:45:15,301 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:45:24,558 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:45:29,810 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:45:38,068 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:45:44,327 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:45:50,586 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:45:55,842 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:46:01,103 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:46:10,358 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:46:17,621 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:46:24,879 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:46:31,139 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:46:45,106 Setting max_seq=508, max_extra_seq=2048
2024-12-08 18:49:48,044 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.2 pTM=0.564 ipTM=0.166
2024-12-08 18:50:25,138 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.4 pTM=0.569 ipTM=0.172 tol=7.59
2024-12-08 18:51:02,390 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.2 pTM=0.567 ipTM=0.176 tol=4.13
2024-12-08 18:51:39,772 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.1 pTM=0.568 ipTM=0.178 tol=3.34
2024-12-08 18:52:17,226 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=72.6 pTM=0.565 ipTM=0.175 tol=1.9
2024-12-08 18:52:54,731 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.7 pTM=0.565 ipTM=0.176 tol=1.3
2024-12-08 18:53:32,277 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=72.7 pTM=0.563 ipTM=0.174 tol=2.14
2024-12-08 18:54:09,835 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.9 pTM=0.571 ipTM=0.221 tol=14.1
2024-12-08 18:54:47,358 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=74.4 pTM=0.582 ipTM=0.272 tol=12.2
2024-12-08 18:55:24,842 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=74.9 pTM=0.605 ipTM=0.334 tol=4.06
2024-12-08 18:56:02,324 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=74.6 pTM=0.605 ipTM=0.326 tol=1.56
2024-12-08 18:56:39,817 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=74.6 pTM=0.607 ipTM=0.323 tol=1.39
2024-12-08 18:57:17,343 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=74.4 pTM=0.6 ipTM=0.302 tol=2.03
2024-12-08 18:57:54,849 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74.9 pTM=0.61 ipTM=0.346 tol=0.869
2024-12-08 18:58:32,349 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=74.9 pTM=0.613 ipTM=0.355 tol=0.909
2024-12-08 18:59:09,841 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=75 pTM=0.612 ipTM=0.361 tol=0.793
2024-12-08 18:59:47,344 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=74.8 pTM=0.597 ipTM=0.293 tol=1.58
2024-12-08 19:00:24,817 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=74.9 pTM=0.602 ipTM=0.335 tol=1.01
2024-12-08 19:01:02,305 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=75.2 pTM=0.603 ipTM=0.328 tol=1.83
2024-12-08 19:01:39,822 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=74.8 pTM=0.604 ipTM=0.327 tol=1.26
2024-12-08 19:02:17,343 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=74.1 pTM=0.607 ipTM=0.286 tol=21.2
2024-12-08 19:02:54,936 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=73.8 pTM=0.568 ipTM=0.186 tol=5.79
2024-12-08 19:03:32,542 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=73.6 pTM=0.575 ipTM=0.213 tol=15.1
2024-12-08 19:04:10,067 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=74.2 pTM=0.587 ipTM=0.274 tol=7.93
2024-12-08 19:04:47,622 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=75.4 pTM=0.609 ipTM=0.329 tol=2.19
2024-12-08 19:05:25,172 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=74.8 pTM=0.599 ipTM=0.291 tol=1.24
2024-12-08 19:06:02,750 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=75.2 pTM=0.605 ipTM=0.338 tol=1.17
2024-12-08 19:06:40,321 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=75.4 pTM=0.611 ipTM=0.341 tol=1.32
2024-12-08 19:07:17,865 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=75.4 pTM=0.614 ipTM=0.36 tol=1.51
2024-12-08 19:07:55,487 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=74.5 pTM=0.591 ipTM=0.288 tol=8.12
2024-12-08 19:08:33,054 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=73.7 pTM=0.566 ipTM=0.201 tol=8.83
2024-12-08 19:08:33,055 alphafold2_multimer_v3_model_1_seed_000 took 1303.1s (30 recycles)
2024-12-08 19:09:11,604 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.4 pTM=0.568 ipTM=0.185
2024-12-08 19:09:49,288 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.1 pTM=0.564 ipTM=0.17 tol=6.6
2024-12-08 19:10:26,934 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.5 pTM=0.564 ipTM=0.17 tol=2.62
2024-12-08 19:11:04,567 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.8 pTM=0.565 ipTM=0.182 tol=2.29
2024-12-08 19:11:42,188 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.3 pTM=0.566 ipTM=0.187 tol=1.69
2024-12-08 19:12:19,807 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.4 pTM=0.565 ipTM=0.189 tol=0.846
2024-12-08 19:12:57,443 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.5 pTM=0.565 ipTM=0.184 tol=1.58
2024-12-08 19:13:35,075 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.3 pTM=0.562 ipTM=0.172 tol=2
2024-12-08 19:14:12,744 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.9 pTM=0.561 ipTM=0.171 tol=1.42
2024-12-08 19:14:50,428 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=75.1 pTM=0.564 ipTM=0.174 tol=1.15
2024-12-08 19:15:28,104 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=74.9 pTM=0.56 ipTM=0.172 tol=1.33
2024-12-08 19:16:05,778 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=75.1 pTM=0.564 ipTM=0.173 tol=0.997
2024-12-08 19:16:43,464 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=75 pTM=0.563 ipTM=0.172 tol=1.8
2024-12-08 19:17:21,121 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=74.8 pTM=0.562 ipTM=0.172 tol=1.03
2024-12-08 19:17:58,765 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=74.8 pTM=0.561 ipTM=0.171 tol=2.37
2024-12-08 19:18:36,443 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74.4 pTM=0.56 ipTM=0.171 tol=4.7
2024-12-08 19:19:14,067 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=74.5 pTM=0.563 ipTM=0.174 tol=2.78
2024-12-08 19:19:51,672 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=74.2 pTM=0.561 ipTM=0.172 tol=1.51
2024-12-08 19:20:29,318 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=74.6 pTM=0.564 ipTM=0.174 tol=1.34
2024-12-08 19:21:06,973 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=73.8 pTM=0.558 ipTM=0.17 tol=4.27
2024-12-08 19:21:44,574 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=74.8 pTM=0.57 ipTM=0.186 tol=20.6
2024-12-08 19:22:22,127 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=74.6 pTM=0.577 ipTM=0.216 tol=6.04
2024-12-08 19:22:59,727 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=74.8 pTM=0.577 ipTM=0.199 tol=1.31
2024-12-08 19:23:37,341 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=73.7 pTM=0.564 ipTM=0.179 tol=3.33
2024-12-08 19:24:15,013 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=74.4 pTM=0.572 ipTM=0.178 tol=2.04
2024-12-08 19:24:52,706 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=73.8 pTM=0.566 ipTM=0.179 tol=1.55
2024-12-08 19:25:30,402 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=73.7 pTM=0.566 ipTM=0.174 tol=1.91
2024-12-08 19:26:08,081 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=73.8 pTM=0.566 ipTM=0.181 tol=1.07
2024-12-08 19:26:45,746 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=74.1 pTM=0.572 ipTM=0.189 tol=1.02
2024-12-08 19:27:23,330 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=74.6 pTM=0.602 ipTM=0.282 tol=4.57
2024-12-08 19:28:00,931 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=75.5 pTM=0.606 ipTM=0.283 tol=5.33
2024-12-08 19:28:00,932 alphafold2_multimer_v3_model_2_seed_000 took 1167.0s (30 recycles)
2024-12-08 19:28:39,540 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.6 pTM=0.545 ipTM=0.145
2024-12-08 19:29:17,272 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.2 pTM=0.555 ipTM=0.159 tol=15
2024-12-08 19:29:54,947 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.4 pTM=0.565 ipTM=0.226 tol=15.8
2024-12-08 19:30:32,578 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.4 pTM=0.569 ipTM=0.24 tol=12.3
2024-12-08 19:31:10,160 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.2 pTM=0.567 ipTM=0.214 tol=6.96
2024-12-08 19:31:47,778 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.2 pTM=0.557 ipTM=0.198 tol=5.69
2024-12-08 19:32:25,335 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.8 pTM=0.589 ipTM=0.304 tol=7.82
2024-12-08 19:33:02,882 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=74.8 pTM=0.566 ipTM=0.224 tol=2.63
2024-12-08 19:33:40,490 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=74.7 pTM=0.562 ipTM=0.206 tol=9.31
2024-12-08 19:34:18,009 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.2 pTM=0.591 ipTM=0.352 tol=12.1
2024-12-08 19:34:55,577 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=74.2 pTM=0.565 ipTM=0.222 tol=6.2
2024-12-08 19:35:33,199 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=74.2 pTM=0.561 ipTM=0.215 tol=10.1
2024-12-08 19:36:10,744 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.1 pTM=0.575 ipTM=0.26 tol=11.7
2024-12-08 19:36:48,301 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=74.1 pTM=0.567 ipTM=0.229 tol=4.57
2024-12-08 19:37:25,872 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=74.1 pTM=0.557 ipTM=0.223 tol=8.83
2024-12-08 19:38:03,429 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.8 pTM=0.583 ipTM=0.306 tol=10.4
2024-12-08 19:38:40,983 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=74.2 pTM=0.562 ipTM=0.222 tol=3.3
2024-12-08 19:39:18,612 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=74.2 pTM=0.561 ipTM=0.218 tol=9.63
2024-12-08 19:39:56,225 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.6 pTM=0.57 ipTM=0.228 tol=27
2024-12-08 19:40:33,807 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.1 pTM=0.576 ipTM=0.226 tol=18.6
2024-12-08 19:41:11,485 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=74.2 pTM=0.565 ipTM=0.206 tol=19.9
2024-12-08 19:41:49,204 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.4 pTM=0.555 ipTM=0.195 tol=6.49
2024-12-08 19:42:26,830 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73.8 pTM=0.581 ipTM=0.289 tol=12.2
2024-12-08 19:43:04,457 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=73.4 pTM=0.555 ipTM=0.222 tol=18
2024-12-08 19:43:42,085 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73.6 pTM=0.564 ipTM=0.206 tol=16.4
2024-12-08 19:44:19,691 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=73.1 pTM=0.589 ipTM=0.306 tol=19.9
2024-12-08 19:44:57,369 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=73.7 pTM=0.558 ipTM=0.21 tol=18
2024-12-08 19:45:35,048 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=73.8 pTM=0.558 ipTM=0.202 tol=13.4
2024-12-08 19:46:12,683 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=73.7 pTM=0.578 ipTM=0.278 tol=19
2024-12-08 19:46:50,279 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=73.2 pTM=0.567 ipTM=0.22 tol=7.28
2024-12-08 19:47:27,931 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=73.6 pTM=0.561 ipTM=0.208 tol=19.1
2024-12-08 19:47:27,932 alphafold2_multimer_v3_model_3_seed_000 took 1166.1s (30 recycles)
2024-12-08 19:48:06,617 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.9 pTM=0.564 ipTM=0.234
2024-12-08 19:48:44,412 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=70.8 pTM=0.562 ipTM=0.166 tol=20.6
2024-12-08 19:49:22,157 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.7 pTM=0.567 ipTM=0.185 tol=15.9
2024-12-08 19:49:59,940 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.6 pTM=0.559 ipTM=0.164 tol=5.68
2024-12-08 19:50:37,716 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=73.4 pTM=0.569 ipTM=0.175 tol=3.51
2024-12-08 19:51:15,498 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.2 pTM=0.559 ipTM=0.166 tol=2.51
2024-12-08 19:51:53,275 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.3 pTM=0.567 ipTM=0.176 tol=3.36
2024-12-08 19:52:31,030 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=72.9 pTM=0.569 ipTM=0.179 tol=2.8
2024-12-08 19:53:08,767 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.9 pTM=0.572 ipTM=0.192 tol=6.66
2024-12-08 19:53:46,510 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=72.4 pTM=0.561 ipTM=0.17 tol=3.89
2024-12-08 19:54:24,232 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=71.7 pTM=0.564 ipTM=0.177 tol=4.45
2024-12-08 19:55:01,954 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=66.3 pTM=0.566 ipTM=0.18 tol=9.14
2024-12-08 19:55:39,687 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=72 pTM=0.562 ipTM=0.174 tol=9.96
2024-12-08 19:56:17,374 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=71.4 pTM=0.563 ipTM=0.181 tol=3.85
2024-12-08 19:56:55,022 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=71.6 pTM=0.568 ipTM=0.19 tol=2.08
2024-12-08 19:57:32,616 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=72.8 pTM=0.579 ipTM=0.237 tol=10.8
2024-12-08 19:58:10,227 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=74.1 pTM=0.574 ipTM=0.214 tol=3.53
2024-12-08 19:58:47,802 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.7 pTM=0.596 ipTM=0.307 tol=2.79
2024-12-08 19:59:25,364 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=73.9 pTM=0.587 ipTM=0.248 tol=1.56
2024-12-08 20:00:02,964 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.6 pTM=0.597 ipTM=0.308 tol=1.34
2024-12-08 20:00:40,542 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73.7 pTM=0.584 ipTM=0.232 tol=1.36
2024-12-08 20:01:18,086 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=73.2 pTM=0.59 ipTM=0.275 tol=1.12
2024-12-08 20:01:55,646 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=73.8 pTM=0.588 ipTM=0.261 tol=1.3
2024-12-08 20:02:33,161 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73.3 pTM=0.592 ipTM=0.304 tol=1.29
2024-12-08 20:03:10,696 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=73.5 pTM=0.585 ipTM=0.254 tol=1.77
2024-12-08 20:03:48,147 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=73.1 pTM=0.591 ipTM=0.292 tol=1.46
2024-12-08 20:04:25,624 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=73.1 pTM=0.583 ipTM=0.248 tol=1.25
2024-12-08 20:05:03,104 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73.1 pTM=0.594 ipTM=0.309 tol=1.51
2024-12-08 20:05:40,600 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=73.4 pTM=0.591 ipTM=0.284 tol=1.69
2024-12-08 20:06:18,144 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73.3 pTM=0.592 ipTM=0.291 tol=1.25
2024-12-08 20:06:55,693 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=72.9 pTM=0.584 ipTM=0.248 tol=1.58
2024-12-08 20:06:55,695 alphafold2_multimer_v3_model_4_seed_000 took 1166.9s (30 recycles)
2024-12-08 20:07:34,289 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=70.7 pTM=0.55 ipTM=0.169
2024-12-08 20:08:12,019 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.9 pTM=0.552 ipTM=0.157 tol=8.65
2024-12-08 20:08:49,766 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=73 pTM=0.558 ipTM=0.16 tol=7.16
2024-12-08 20:09:27,512 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.9 pTM=0.558 ipTM=0.157 tol=5.08
2024-12-08 20:10:05,274 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=73.4 pTM=0.558 ipTM=0.156 tol=3
2024-12-08 20:10:43,016 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=73.4 pTM=0.559 ipTM=0.159 tol=1.71
2024-12-08 20:11:20,749 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.6 pTM=0.561 ipTM=0.16 tol=1.41
2024-12-08 20:11:58,437 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=73.4 pTM=0.559 ipTM=0.16 tol=2.11
2024-12-08 20:12:36,229 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=73.7 pTM=0.554 ipTM=0.151 tol=8.73
2024-12-08 20:13:13,966 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.8 pTM=0.552 ipTM=0.149 tol=5.7
2024-12-08 20:13:51,725 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.8 pTM=0.555 ipTM=0.149 tol=8.69
2024-12-08 20:14:29,388 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.6 pTM=0.558 ipTM=0.161 tol=11.2
2024-12-08 20:15:07,033 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=73.6 pTM=0.567 ipTM=0.181 tol=4.64
2024-12-08 20:15:44,693 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=73.6 pTM=0.569 ipTM=0.191 tol=2.2
2024-12-08 20:16:22,379 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=73.6 pTM=0.572 ipTM=0.196 tol=1.2
2024-12-08 20:17:00,153 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=72.9 pTM=0.57 ipTM=0.2 tol=27.7
2024-12-08 20:17:37,959 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=73 pTM=0.571 ipTM=0.189 tol=5.49
2024-12-08 20:18:15,819 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=72.1 pTM=0.564 ipTM=0.173 tol=4.72
2024-12-08 20:18:53,713 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=71.9 pTM=0.562 ipTM=0.167 tol=3.43
2024-12-08 20:19:31,563 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.9 pTM=0.56 ipTM=0.168 tol=5.67
2024-12-08 20:20:09,411 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=72.4 pTM=0.559 ipTM=0.168 tol=11.8
2024-12-08 20:20:47,192 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.9 pTM=0.563 ipTM=0.177 tol=13.2
2024-12-08 20:21:25,006 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=71.8 pTM=0.563 ipTM=0.172 tol=4.59
2024-12-08 20:22:02,830 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.6 pTM=0.558 ipTM=0.158 tol=11.7
2024-12-08 20:22:40,538 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=73.1 pTM=0.573 ipTM=0.23 tol=9.41
2024-12-08 20:23:18,270 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72.9 pTM=0.571 ipTM=0.197 tol=10.6
2024-12-08 20:23:55,944 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72.4 pTM=0.581 ipTM=0.221 tol=6.34
2024-12-08 20:24:33,665 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=73.1 pTM=0.571 ipTM=0.206 tol=15.1
2024-12-08 20:25:11,297 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=73.2 pTM=0.572 ipTM=0.223 tol=7.39
2024-12-08 20:25:48,871 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=73.4 pTM=0.57 ipTM=0.195 tol=10.1
2024-12-08 20:26:26,465 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=73.1 pTM=0.563 ipTM=0.196 tol=7.07
2024-12-08 20:26:26,466 alphafold2_multimer_v3_model_5_seed_000 took 1169.9s (30 recycles)
2024-12-08 20:26:27,367 reranking models by 'multimer' metric
2024-12-08 20:26:30,577 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 20:29:03,137 Relaxation took 155.8s
2024-12-08 20:29:03,137 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.5 pTM=0.606 ipTM=0.283
2024-12-08 20:31:36,177 Relaxation took 153.0s
2024-12-08 20:31:36,178 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=72.9 pTM=0.584 ipTM=0.248
2024-12-08 20:32:22,741 Relaxation took 46.6s
2024-12-08 20:32:22,742 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.6 pTM=0.561 ipTM=0.208
2024-12-08 20:36:10,771 Relaxation took 228.0s
2024-12-08 20:36:10,771 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.7 pTM=0.566 ipTM=0.201
2024-12-08 20:38:11,278 Relaxation took 120.5s
2024-12-08 20:38:11,279 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=73.1 pTM=0.563 ipTM=0.196
2024-12-08 20:38:13,781 Done