2024-12-08 18:46:54,242 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 18:46:54,554 Running on GPU
2024-12-08 18:46:58,426 Found 6 citations for tools or databases
2024-12-08 18:46:58,426 Query 1/1: TRAF4_BEND3 (length 1298)
2024-12-08 18:46:58,733 Sleeping for 9s. Reason: PENDING
2024-12-08 18:47:08,005 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:47:14,264 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:47:22,522 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:47:27,775 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:47:37,039 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:47:45,302 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:47:52,558 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:47:59,817 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:48:05,076 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:48:11,333 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:48:18,601 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:48:28,874 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:48:36,126 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:48:42,380 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:48:52,637 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:48:58,891 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:49:09,155 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:49:19,420 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:49:24,671 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:49:29,927 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:49:37,185 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:49:46,978 Sleeping for 10s. Reason: PENDING
2024-12-08 18:49:57,233 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:50:07,492 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:50:16,746 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:50:21,994 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:30,249 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:38,505 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:46,761 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:50:56,020 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:51:05,703 Setting max_seq=508, max_extra_seq=2048
2024-12-08 18:54:17,139 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.1 pTM=0.25 ipTM=0.175
2024-12-08 18:55:00,911 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.7 pTM=0.253 ipTM=0.228 tol=11.8
2024-12-08 18:55:44,859 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.1 pTM=0.252 ipTM=0.204 tol=8.71
2024-12-08 18:56:28,895 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=60.2 pTM=0.257 ipTM=0.174 tol=6.3
2024-12-08 18:57:12,986 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.4 pTM=0.257 ipTM=0.186 tol=4.24
2024-12-08 18:57:57,107 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=60.4 pTM=0.261 ipTM=0.204 tol=4.62
2024-12-08 18:58:41,261 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.5 pTM=0.266 ipTM=0.19 tol=3.66
2024-12-08 18:59:25,416 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=60.4 pTM=0.264 ipTM=0.206 tol=4.11
2024-12-08 19:00:09,574 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=60.9 pTM=0.264 ipTM=0.292 tol=5.71
2024-12-08 19:00:53,716 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.8 pTM=0.262 ipTM=0.298 tol=3.66
2024-12-08 19:01:37,884 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=60.8 pTM=0.263 ipTM=0.313 tol=2.71
2024-12-08 19:02:22,078 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=60.6 pTM=0.26 ipTM=0.311 tol=2.3
2024-12-08 19:03:06,339 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61 pTM=0.26 ipTM=0.308 tol=1.63
2024-12-08 19:03:50,597 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61 pTM=0.258 ipTM=0.306 tol=2.47
2024-12-08 19:04:34,863 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=60.8 pTM=0.26 ipTM=0.318 tol=3.53
2024-12-08 19:05:19,092 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.7 pTM=0.261 ipTM=0.32 tol=3.5
2024-12-08 19:06:03,312 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60.6 pTM=0.261 ipTM=0.322 tol=4.34
2024-12-08 19:06:47,514 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=60.6 pTM=0.26 ipTM=0.321 tol=5.36
2024-12-08 19:07:31,715 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=60.7 pTM=0.257 ipTM=0.321 tol=2.44
2024-12-08 19:08:15,877 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=60.6 pTM=0.256 ipTM=0.318 tol=1.68
2024-12-08 19:09:00,033 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=60.9 pTM=0.26 ipTM=0.318 tol=4.55
2024-12-08 19:09:44,167 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=60.6 pTM=0.26 ipTM=0.319 tol=2.81
2024-12-08 19:10:28,365 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=60.3 pTM=0.261 ipTM=0.318 tol=4.92
2024-12-08 19:11:12,549 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=60.6 pTM=0.268 ipTM=0.308 tol=4.52
2024-12-08 19:11:56,806 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.3 pTM=0.271 ipTM=0.309 tol=4.11
2024-12-08 19:12:41,045 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=61.2 pTM=0.301 ipTM=0.302 tol=12.1
2024-12-08 19:13:25,332 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=61.2 pTM=0.285 ipTM=0.305 tol=7.16
2024-12-08 19:14:09,623 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=61.1 pTM=0.27 ipTM=0.306 tol=3.62
2024-12-08 19:14:53,830 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=61.8 pTM=0.297 ipTM=0.31 tol=7.9
2024-12-08 19:15:37,982 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62 pTM=0.291 ipTM=0.314 tol=3.04
2024-12-08 19:16:22,115 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=62.1 pTM=0.301 ipTM=0.312 tol=2.79
2024-12-08 19:16:22,116 alphafold2_multimer_v3_model_1_seed_000 took 1511.0s (30 recycles)
2024-12-08 19:17:07,356 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=57.4 pTM=0.25 ipTM=0.151
2024-12-08 19:17:51,645 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=59.3 pTM=0.246 ipTM=0.154 tol=11.9
2024-12-08 19:18:35,876 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.2 pTM=0.244 ipTM=0.151 tol=10.6
2024-12-08 19:19:20,104 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=59.7 pTM=0.248 ipTM=0.151 tol=11.4
2024-12-08 19:20:04,316 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60 pTM=0.248 ipTM=0.15 tol=8.13
2024-12-08 19:20:48,503 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.2 pTM=0.249 ipTM=0.151 tol=3.73
2024-12-08 19:21:32,785 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.3 pTM=0.247 ipTM=0.151 tol=5.54
2024-12-08 19:22:17,061 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=60.2 pTM=0.249 ipTM=0.151 tol=10.8
2024-12-08 19:23:01,310 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61 pTM=0.254 ipTM=0.151 tol=5.79
2024-12-08 19:23:45,490 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=60.5 pTM=0.251 ipTM=0.152 tol=7.71
2024-12-08 19:24:29,721 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.9 pTM=0.251 ipTM=0.149 tol=3.88
2024-12-08 19:25:13,918 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=60.7 pTM=0.249 ipTM=0.151 tol=3.85
2024-12-08 19:25:58,146 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=60.6 pTM=0.247 ipTM=0.151 tol=3.95
2024-12-08 19:26:42,411 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.5 pTM=0.248 ipTM=0.151 tol=8.29
2024-12-08 19:27:26,627 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.6 pTM=0.246 ipTM=0.149 tol=6.44
2024-12-08 19:28:10,824 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.5 pTM=0.247 ipTM=0.151 tol=5.61
2024-12-08 19:28:54,983 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.4 pTM=0.246 ipTM=0.15 tol=3.02
2024-12-08 19:29:39,166 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.5 pTM=0.245 ipTM=0.15 tol=4.12
2024-12-08 19:30:23,351 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.6 pTM=0.245 ipTM=0.149 tol=6.58
2024-12-08 19:31:07,510 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.3 pTM=0.244 ipTM=0.15 tol=6.08
2024-12-08 19:31:51,659 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.4 pTM=0.243 ipTM=0.15 tol=4.11
2024-12-08 19:32:35,855 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.3 pTM=0.244 ipTM=0.15 tol=9.72
2024-12-08 19:33:20,024 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.6 pTM=0.246 ipTM=0.15 tol=6.58
2024-12-08 19:34:04,098 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.7 pTM=0.248 ipTM=0.151 tol=6.07
2024-12-08 19:34:48,249 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.7 pTM=0.246 ipTM=0.151 tol=4.98
2024-12-08 19:35:32,441 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.3 pTM=0.245 ipTM=0.151 tol=6.65
2024-12-08 19:36:16,689 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.8 pTM=0.246 ipTM=0.15 tol=4.24
2024-12-08 19:37:00,889 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.5 pTM=0.245 ipTM=0.151 tol=5.18
2024-12-08 19:37:45,082 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.5 pTM=0.243 ipTM=0.15 tol=4.4
2024-12-08 19:38:29,287 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.4 pTM=0.244 ipTM=0.149 tol=6.9
2024-12-08 19:39:13,488 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.8 pTM=0.243 ipTM=0.149 tol=6
2024-12-08 19:39:13,490 alphafold2_multimer_v3_model_2_seed_000 took 1370.4s (30 recycles)
2024-12-08 19:39:58,852 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=58 pTM=0.249 ipTM=0.147
2024-12-08 19:40:43,152 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=59.1 pTM=0.247 ipTM=0.143 tol=16.6
2024-12-08 19:41:27,419 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=58.7 pTM=0.247 ipTM=0.144 tol=8.85
2024-12-08 19:42:11,649 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=58.9 pTM=0.249 ipTM=0.144 tol=9.57
2024-12-08 19:42:55,866 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=58.8 pTM=0.247 ipTM=0.159 tol=10.4
2024-12-08 19:43:40,069 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=58.8 pTM=0.249 ipTM=0.169 tol=6.61
2024-12-08 19:44:24,281 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=58.9 pTM=0.248 ipTM=0.171 tol=7.36
2024-12-08 19:45:08,527 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=59.1 pTM=0.247 ipTM=0.172 tol=2.73
2024-12-08 19:45:52,786 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=59.2 pTM=0.247 ipTM=0.172 tol=2.21
2024-12-08 19:46:37,023 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=59.1 pTM=0.247 ipTM=0.178 tol=2.76
2024-12-08 19:47:21,231 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=59 pTM=0.247 ipTM=0.182 tol=6.93
2024-12-08 19:48:05,390 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=59 pTM=0.248 ipTM=0.186 tol=6.9
2024-12-08 19:48:49,560 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=59 pTM=0.247 ipTM=0.185 tol=7.43
2024-12-08 19:49:33,725 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=59.1 pTM=0.248 ipTM=0.188 tol=3.4
2024-12-08 19:50:17,942 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=58.8 pTM=0.248 ipTM=0.188 tol=8.62
2024-12-08 19:51:02,166 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=58.9 pTM=0.248 ipTM=0.189 tol=2.22
2024-12-08 19:51:46,351 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=58.8 pTM=0.25 ipTM=0.185 tol=2.98
2024-12-08 19:52:30,508 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=59 pTM=0.249 ipTM=0.192 tol=1.8
2024-12-08 19:53:14,698 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=59.2 pTM=0.249 ipTM=0.194 tol=7.1
2024-12-08 19:53:58,904 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=59.1 pTM=0.248 ipTM=0.195 tol=2.64
2024-12-08 19:54:43,144 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=59.2 pTM=0.249 ipTM=0.198 tol=2.02
2024-12-08 19:55:27,400 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=59 pTM=0.25 ipTM=0.203 tol=7.51
2024-12-08 19:56:11,633 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=59 pTM=0.249 ipTM=0.196 tol=7.43
2024-12-08 19:56:55,828 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=59.1 pTM=0.25 ipTM=0.193 tol=8.28
2024-12-08 19:57:40,037 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=59 pTM=0.25 ipTM=0.192 tol=8.48
2024-12-08 19:58:24,200 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.1 pTM=0.25 ipTM=0.191 tol=3.09
2024-12-08 19:59:08,378 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59 pTM=0.25 ipTM=0.191 tol=1.11
2024-12-08 19:59:52,630 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=59.1 pTM=0.25 ipTM=0.194 tol=1.17
2024-12-08 20:00:36,913 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=58.9 pTM=0.249 ipTM=0.194 tol=1.22
2024-12-08 20:01:21,204 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=59 pTM=0.25 ipTM=0.19 tol=7.8
2024-12-08 20:02:05,467 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=58.8 pTM=0.25 ipTM=0.188 tol=2.98
2024-12-08 20:02:05,468 alphafold2_multimer_v3_model_3_seed_000 took 1371.0s (30 recycles)
2024-12-08 20:02:50,899 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=55.8 pTM=0.251 ipTM=0.148
2024-12-08 20:03:35,240 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=58.7 pTM=0.259 ipTM=0.283 tol=17.3
2024-12-08 20:04:19,610 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.7 pTM=0.258 ipTM=0.209 tol=15.2
2024-12-08 20:05:03,949 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=58.9 pTM=0.258 ipTM=0.21 tol=15.3
2024-12-08 20:05:48,259 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=59.8 pTM=0.259 ipTM=0.193 tol=9.29
2024-12-08 20:06:32,546 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=59.2 pTM=0.26 ipTM=0.194 tol=17.9
2024-12-08 20:07:16,802 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=59.5 pTM=0.262 ipTM=0.189 tol=8.54
2024-12-08 20:08:01,059 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=59.4 pTM=0.26 ipTM=0.182 tol=8.12
2024-12-08 20:08:45,333 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=59.8 pTM=0.26 ipTM=0.178 tol=7.5
2024-12-08 20:09:29,610 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=58.9 pTM=0.258 ipTM=0.18 tol=5.93
2024-12-08 20:10:13,889 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=59.3 pTM=0.259 ipTM=0.191 tol=4.4
2024-12-08 20:10:58,160 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=58.9 pTM=0.258 ipTM=0.186 tol=2.79
2024-12-08 20:11:42,391 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=59.3 pTM=0.258 ipTM=0.178 tol=5.07
2024-12-08 20:12:26,618 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=59.2 pTM=0.258 ipTM=0.175 tol=5.5
2024-12-08 20:13:10,903 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=59.2 pTM=0.258 ipTM=0.177 tol=5.44
2024-12-08 20:13:55,151 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=59.2 pTM=0.257 ipTM=0.177 tol=6
2024-12-08 20:14:39,439 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=59.6 pTM=0.256 ipTM=0.175 tol=6.37
2024-12-08 20:15:23,692 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=59.4 pTM=0.256 ipTM=0.173 tol=6.19
2024-12-08 20:16:07,939 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=60.1 pTM=0.257 ipTM=0.173 tol=5.98
2024-12-08 20:16:52,208 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=59.6 pTM=0.27 ipTM=0.192 tol=16.6
2024-12-08 20:17:36,385 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=59.9 pTM=0.261 ipTM=0.179 tol=9.23
2024-12-08 20:18:20,547 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=59.9 pTM=0.273 ipTM=0.198 tol=4.26
2024-12-08 20:19:04,791 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=59.9 pTM=0.263 ipTM=0.178 tol=5.04
2024-12-08 20:19:49,067 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=60.1 pTM=0.269 ipTM=0.185 tol=4.73
2024-12-08 20:20:33,315 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=59.8 pTM=0.263 ipTM=0.183 tol=4.95
2024-12-08 20:21:17,550 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=60.2 pTM=0.271 ipTM=0.19 tol=3.24
2024-12-08 20:22:01,707 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60 pTM=0.262 ipTM=0.184 tol=3.28
2024-12-08 20:22:45,854 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=60.2 pTM=0.268 ipTM=0.187 tol=3.35
2024-12-08 20:23:30,053 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=59.6 pTM=0.263 ipTM=0.187 tol=3.12
2024-12-08 20:24:14,276 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.2 pTM=0.262 ipTM=0.19 tol=3.47
2024-12-08 20:24:58,493 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=59.9 pTM=0.263 ipTM=0.19 tol=2.52
2024-12-08 20:24:58,494 alphafold2_multimer_v3_model_4_seed_000 took 1372.0s (30 recycles)
2024-12-08 20:25:43,893 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=56.2 pTM=0.257 ipTM=0.15
2024-12-08 20:26:28,179 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.2 pTM=0.262 ipTM=0.197 tol=16
2024-12-08 20:27:12,439 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.9 pTM=0.26 ipTM=0.207 tol=10.9
2024-12-08 20:27:56,750 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=59.2 pTM=0.26 ipTM=0.194 tol=5.92
2024-12-08 20:28:41,058 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=59.4 pTM=0.261 ipTM=0.228 tol=7.19
2024-12-08 20:29:25,384 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=59.5 pTM=0.261 ipTM=0.214 tol=9.2
2024-12-08 20:30:09,683 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=59.1 pTM=0.262 ipTM=0.211 tol=7.39
2024-12-08 20:30:53,966 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=59.5 pTM=0.262 ipTM=0.211 tol=6.02
2024-12-08 20:31:38,241 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=59.3 pTM=0.264 ipTM=0.209 tol=5.22
2024-12-08 20:32:22,547 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=59.4 pTM=0.262 ipTM=0.213 tol=5.38
2024-12-08 20:33:06,865 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=59.4 pTM=0.264 ipTM=0.218 tol=6.85
2024-12-08 20:33:51,145 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=59.3 pTM=0.261 ipTM=0.214 tol=6.02
2024-12-08 20:34:35,384 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=59.2 pTM=0.261 ipTM=0.211 tol=6.02
2024-12-08 20:35:19,672 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=59 pTM=0.26 ipTM=0.209 tol=7.06
2024-12-08 20:36:03,928 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=58.9 pTM=0.261 ipTM=0.206 tol=7.82
2024-12-08 20:36:48,193 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=58.8 pTM=0.26 ipTM=0.198 tol=4.43
2024-12-08 20:37:32,445 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=58.7 pTM=0.258 ipTM=0.204 tol=4.46
2024-12-08 20:38:16,780 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=59.1 pTM=0.259 ipTM=0.2 tol=3.92
2024-12-08 20:39:01,130 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=59.4 pTM=0.261 ipTM=0.206 tol=4.6
2024-12-08 20:39:45,501 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=59.2 pTM=0.26 ipTM=0.193 tol=3.72
2024-12-08 20:40:29,838 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=59.4 pTM=0.261 ipTM=0.196 tol=4.58
2024-12-08 20:41:14,132 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=59.2 pTM=0.26 ipTM=0.199 tol=2.86
2024-12-08 20:41:58,397 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=58.4 pTM=0.259 ipTM=0.191 tol=5.41
2024-12-08 20:42:42,738 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=59.2 pTM=0.262 ipTM=0.212 tol=7.77
2024-12-08 20:43:27,065 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=59 pTM=0.261 ipTM=0.2 tol=5.13
2024-12-08 20:44:11,392 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=59 pTM=0.26 ipTM=0.169 tol=6.04
2024-12-08 20:44:55,716 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=58.9 pTM=0.259 ipTM=0.168 tol=5.02
2024-12-08 20:45:40,024 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=59.3 pTM=0.26 ipTM=0.174 tol=5.26
2024-12-08 20:46:24,254 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=57.3 pTM=0.276 ipTM=0.214 tol=10
2024-12-08 20:47:08,544 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=59.3 pTM=0.258 ipTM=0.149 tol=6.96
2024-12-08 20:47:52,819 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=58.8 pTM=0.259 ipTM=0.145 tol=7.74
2024-12-08 20:47:52,821 alphafold2_multimer_v3_model_5_seed_000 took 1373.3s (30 recycles)
2024-12-08 20:47:53,836 reranking models by 'multimer' metric
2024-12-08 20:47:57,346 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 20:49:46,127 Relaxation took 112.3s
2024-12-08 20:49:46,127 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=62.1 pTM=0.301 ipTM=0.312
2024-12-08 20:51:36,181 Relaxation took 110.1s
2024-12-08 20:51:36,181 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=59.9 pTM=0.263 ipTM=0.19
2024-12-08 21:00:42,788 Relaxation took 546.6s
2024-12-08 21:00:42,791 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=58.8 pTM=0.25 ipTM=0.188
2024-12-08 21:02:54,953 Relaxation took 132.2s
2024-12-08 21:02:54,953 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.8 pTM=0.243 ipTM=0.149
2024-12-08 21:05:41,048 Relaxation took 166.1s
2024-12-08 21:05:41,048 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=58.8 pTM=0.259 ipTM=0.145
2024-12-08 21:05:43,668 Done