2024-12-08 18:48:52,118 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 18:48:52,450 Running on GPU
2024-12-08 18:48:55,909 Found 6 citations for tools or databases
2024-12-08 18:48:55,909 Query 1/1: TRAF6_PSMC5 (length 928)
2024-12-08 18:48:56,192 Sleeping for 10s. Reason: PENDING
2024-12-08 18:49:06,459 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:49:11,713 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:49:18,971 Sleeping for 8s. Reason: RUNNING
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2024-12-08 18:49:54,020 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:02,281 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:10,546 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:50:18,806 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:50:26,060 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:50:31,318 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:50:38,572 Sleeping for 9s. Reason: RUNNING
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2024-12-08 18:50:58,096 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:51:04,348 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:51:12,607 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:51:18,862 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:51:27,119 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:51:36,376 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:51:46,634 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:51:56,897 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:52:07,155 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:52:15,419 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:52:22,676 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:52:31,935 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:52:40,196 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:52:50,453 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:52:55,704 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:53:05,967 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:53:14,229 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:53:20,491 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:53:27,747 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:53:39,476 Sleeping for 9s. Reason: PENDING
2024-12-08 18:53:48,737 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:53:57,984 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:54:05,243 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:54:13,501 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:54:18,756 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:54:26,010 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:54:34,265 Sleeping for 8s. Reason: RUNNING
2024-12-08 18:54:42,522 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:54:49,778 Sleeping for 9s. Reason: RUNNING
2024-12-08 18:54:59,036 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:55:05,291 Sleeping for 10s. Reason: RUNNING
2024-12-08 18:55:15,552 Sleeping for 6s. Reason: RUNNING
2024-12-08 18:55:21,819 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:55:27,074 Sleeping for 5s. Reason: RUNNING
2024-12-08 18:55:32,327 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:55:39,585 Sleeping for 7s. Reason: RUNNING
2024-12-08 18:55:51,367 Setting max_seq=508, max_extra_seq=2048
2024-12-08 18:57:59,879 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.5 pTM=0.319 ipTM=0.116
2024-12-08 18:58:16,426 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.2 pTM=0.323 ipTM=0.12 tol=16.9
2024-12-08 18:58:33,038 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.2 pTM=0.317 ipTM=0.116 tol=6.92
2024-12-08 18:58:49,627 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=67.7 pTM=0.314 ipTM=0.116 tol=5.44
2024-12-08 18:59:06,234 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=67.9 pTM=0.317 ipTM=0.126 tol=7.91
2024-12-08 18:59:22,850 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.6 pTM=0.321 ipTM=0.128 tol=4.96
2024-12-08 18:59:39,464 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.7 pTM=0.318 ipTM=0.129 tol=3.06
2024-12-08 18:59:56,096 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.1 pTM=0.318 ipTM=0.125 tol=3
2024-12-08 19:00:12,724 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=69.2 pTM=0.317 ipTM=0.123 tol=3.62
2024-12-08 19:00:29,356 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=69.2 pTM=0.321 ipTM=0.124 tol=5.7
2024-12-08 19:00:46,002 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69.1 pTM=0.316 ipTM=0.127 tol=3.42
2024-12-08 19:01:02,678 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=69.6 pTM=0.324 ipTM=0.126 tol=3.13
2024-12-08 19:01:19,329 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=69.5 pTM=0.321 ipTM=0.127 tol=3.25
2024-12-08 19:01:35,981 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=69.4 pTM=0.323 ipTM=0.129 tol=2.46
2024-12-08 19:01:52,641 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=68.6 pTM=0.318 ipTM=0.133 tol=3.2
2024-12-08 19:02:09,300 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=69.2 pTM=0.322 ipTM=0.13 tol=2.46
2024-12-08 19:02:25,962 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=69.1 pTM=0.32 ipTM=0.131 tol=2.03
2024-12-08 19:02:42,621 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=69.6 pTM=0.321 ipTM=0.132 tol=2.17
2024-12-08 19:02:59,264 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=69.2 pTM=0.322 ipTM=0.135 tol=2.13
2024-12-08 19:03:15,959 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=69.6 pTM=0.322 ipTM=0.13 tol=3.01
2024-12-08 19:03:32,615 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=68.4 pTM=0.319 ipTM=0.127 tol=2.73
2024-12-08 19:03:49,275 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=69.6 pTM=0.326 ipTM=0.129 tol=2.77
2024-12-08 19:04:05,934 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=69.2 pTM=0.324 ipTM=0.133 tol=2.84
2024-12-08 19:04:22,602 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=69.8 pTM=0.325 ipTM=0.131 tol=2.42
2024-12-08 19:04:39,272 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=68.6 pTM=0.32 ipTM=0.132 tol=2.45
2024-12-08 19:04:55,938 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=69.1 pTM=0.319 ipTM=0.132 tol=2.4
2024-12-08 19:05:12,605 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=68.1 pTM=0.312 ipTM=0.13 tol=2.19
2024-12-08 19:05:29,275 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=69 pTM=0.319 ipTM=0.132 tol=1.14
2024-12-08 19:05:45,938 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=68.1 pTM=0.315 ipTM=0.131 tol=1.5
2024-12-08 19:06:02,601 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=68.4 pTM=0.319 ipTM=0.132 tol=1.5
2024-12-08 19:06:19,268 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=68.5 pTM=0.32 ipTM=0.132 tol=2.04
2024-12-08 19:06:19,268 alphafold2_multimer_v3_model_1_seed_000 took 622.5s (30 recycles)
2024-12-08 19:06:36,547 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.8 pTM=0.309 ipTM=0.114
2024-12-08 19:06:53,280 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.1 pTM=0.311 ipTM=0.113 tol=10.3
2024-12-08 19:07:10,033 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=68 pTM=0.31 ipTM=0.117 tol=8.05
2024-12-08 19:07:26,799 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=68.2 pTM=0.309 ipTM=0.114 tol=3.78
2024-12-08 19:07:43,568 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=69.1 pTM=0.314 ipTM=0.115 tol=5.62
2024-12-08 19:08:00,317 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=68.9 pTM=0.311 ipTM=0.119 tol=5.7
2024-12-08 19:08:17,038 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=68.7 pTM=0.307 ipTM=0.12 tol=2.22
2024-12-08 19:08:33,767 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=68.8 pTM=0.307 ipTM=0.12 tol=2.2
2024-12-08 19:08:50,498 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=68.7 pTM=0.305 ipTM=0.12 tol=1.17
2024-12-08 19:09:07,228 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=68.8 pTM=0.308 ipTM=0.119 tol=2.44
2024-12-08 19:09:23,977 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=68.9 pTM=0.307 ipTM=0.119 tol=3.6
2024-12-08 19:09:40,695 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=68.6 pTM=0.306 ipTM=0.12 tol=2.8
2024-12-08 19:09:57,418 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=68.9 pTM=0.308 ipTM=0.119 tol=1.23
2024-12-08 19:10:14,152 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=69.1 pTM=0.313 ipTM=0.12 tol=1.75
2024-12-08 19:10:30,899 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=68.4 pTM=0.305 ipTM=0.12 tol=2.21
2024-12-08 19:10:47,635 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=68.8 pTM=0.309 ipTM=0.118 tol=3.81
2024-12-08 19:11:04,361 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=68.9 pTM=0.307 ipTM=0.115 tol=1.91
2024-12-08 19:11:21,094 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=69.4 pTM=0.313 ipTM=0.117 tol=2.45
2024-12-08 19:11:37,831 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=68.6 pTM=0.305 ipTM=0.118 tol=1.56
2024-12-08 19:11:54,580 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=69.2 pTM=0.313 ipTM=0.117 tol=1.47
2024-12-08 19:12:11,311 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=68.9 pTM=0.31 ipTM=0.114 tol=1.92
2024-12-08 19:12:28,041 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=68.9 pTM=0.308 ipTM=0.116 tol=2.27
2024-12-08 19:12:44,776 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=68.6 pTM=0.306 ipTM=0.116 tol=1.78
2024-12-08 19:13:01,505 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=69.2 pTM=0.311 ipTM=0.117 tol=2.1
2024-12-08 19:13:18,230 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=68.8 pTM=0.307 ipTM=0.117 tol=1.48
2024-12-08 19:13:34,951 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=68.8 pTM=0.307 ipTM=0.117 tol=1.4
2024-12-08 19:13:51,678 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=68.5 pTM=0.304 ipTM=0.116 tol=2.3
2024-12-08 19:14:08,402 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=68.7 pTM=0.304 ipTM=0.116 tol=1.63
2024-12-08 19:14:25,140 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=68.4 pTM=0.302 ipTM=0.118 tol=1.57
2024-12-08 19:14:41,864 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=68.7 pTM=0.304 ipTM=0.118 tol=2.09
2024-12-08 19:14:58,600 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=69.1 pTM=0.31 ipTM=0.118 tol=2.47
2024-12-08 19:14:58,601 alphafold2_multimer_v3_model_2_seed_000 took 518.8s (30 recycles)
2024-12-08 19:15:15,852 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.2 pTM=0.328 ipTM=0.12
2024-12-08 19:15:32,579 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=68.1 pTM=0.322 ipTM=0.109 tol=14
2024-12-08 19:15:49,251 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.1 pTM=0.329 ipTM=0.111 tol=7.14
2024-12-08 19:16:05,833 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=71.2 pTM=0.346 ipTM=0.339 tol=26.7
2024-12-08 19:16:22,362 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=71.5 pTM=0.359 ipTM=0.368 tol=6.64
2024-12-08 19:16:38,906 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=71.8 pTM=0.373 ipTM=0.375 tol=5.87
2024-12-08 19:16:55,445 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72 pTM=0.369 ipTM=0.374 tol=2.27
2024-12-08 19:17:11,980 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=71.9 pTM=0.37 ipTM=0.372 tol=2.78
2024-12-08 19:17:28,532 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=71.8 pTM=0.372 ipTM=0.376 tol=3.29
2024-12-08 19:17:45,073 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=71.7 pTM=0.372 ipTM=0.373 tol=2.07
2024-12-08 19:18:01,617 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=71.8 pTM=0.369 ipTM=0.374 tol=1.57
2024-12-08 19:18:18,164 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=71.9 pTM=0.372 ipTM=0.376 tol=1.96
2024-12-08 19:18:34,701 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=71.8 pTM=0.37 ipTM=0.37 tol=1.11
2024-12-08 19:18:51,229 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=71.9 pTM=0.369 ipTM=0.372 tol=1.29
2024-12-08 19:19:07,754 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=71.6 pTM=0.371 ipTM=0.374 tol=0.922
2024-12-08 19:19:24,300 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72 pTM=0.374 ipTM=0.373 tol=0.998
2024-12-08 19:19:40,826 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=72 pTM=0.374 ipTM=0.375 tol=0.937
2024-12-08 19:19:57,361 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=72 pTM=0.375 ipTM=0.375 tol=0.591
2024-12-08 19:20:13,894 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=71.8 pTM=0.371 ipTM=0.373 tol=0.552
2024-12-08 19:20:30,449 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=71.9 pTM=0.377 ipTM=0.38 tol=0.748
2024-12-08 19:20:46,989 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=72.1 pTM=0.375 ipTM=0.375 tol=0.785
2024-12-08 19:21:03,534 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=71.9 pTM=0.374 ipTM=0.379 tol=0.73
2024-12-08 19:21:20,081 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=72 pTM=0.378 ipTM=0.377 tol=0.646
2024-12-08 19:21:36,592 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=71.9 pTM=0.373 ipTM=0.378 tol=0.947
2024-12-08 19:21:53,129 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=71.8 pTM=0.373 ipTM=0.377 tol=0.654
2024-12-08 19:22:09,665 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=71.6 pTM=0.373 ipTM=0.378 tol=0.708
2024-12-08 19:22:26,194 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=71.8 pTM=0.372 ipTM=0.373 tol=0.669
2024-12-08 19:22:42,736 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=71.6 pTM=0.37 ipTM=0.373 tol=0.839
2024-12-08 19:22:59,260 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=71.5 pTM=0.369 ipTM=0.37 tol=0.823
2024-12-08 19:23:15,792 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=71.4 pTM=0.368 ipTM=0.37 tol=0.563
2024-12-08 19:23:32,314 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=71.7 pTM=0.375 ipTM=0.378 tol=0.776
2024-12-08 19:23:32,315 alphafold2_multimer_v3_model_3_seed_000 took 513.2s (30 recycles)
2024-12-08 19:23:49,583 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=67.1 pTM=0.321 ipTM=0.144
2024-12-08 19:24:06,285 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=67.9 pTM=0.326 ipTM=0.138 tol=11.2
2024-12-08 19:24:22,954 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68.7 pTM=0.329 ipTM=0.116 tol=5.57
2024-12-08 19:24:39,604 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69.7 pTM=0.33 ipTM=0.124 tol=4.07
2024-12-08 19:24:56,280 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68.8 pTM=0.332 ipTM=0.161 tol=13.2
2024-12-08 19:25:12,859 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70.8 pTM=0.341 ipTM=0.269 tol=22.3
2024-12-08 19:25:29,421 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=70.7 pTM=0.349 ipTM=0.248 tol=4.56
2024-12-08 19:25:45,987 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.4 pTM=0.339 ipTM=0.241 tol=2.42
2024-12-08 19:26:02,557 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=70.8 pTM=0.345 ipTM=0.239 tol=2.07
2024-12-08 19:26:19,129 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=70.9 pTM=0.346 ipTM=0.237 tol=1.07
2024-12-08 19:26:35,707 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=70.7 pTM=0.344 ipTM=0.23 tol=0.957
2024-12-08 19:26:52,295 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=70.2 pTM=0.339 ipTM=0.219 tol=1.83
2024-12-08 19:27:08,874 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=70.6 pTM=0.341 ipTM=0.218 tol=1.96
2024-12-08 19:27:25,451 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=70.2 pTM=0.34 ipTM=0.209 tol=1
2024-12-08 19:27:42,064 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=69.9 pTM=0.337 ipTM=0.212 tol=1.22
2024-12-08 19:27:58,662 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=70 pTM=0.338 ipTM=0.208 tol=1.14
2024-12-08 19:28:15,264 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=70.4 pTM=0.34 ipTM=0.204 tol=1.75
2024-12-08 19:28:31,861 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=70.4 pTM=0.337 ipTM=0.192 tol=1.5
2024-12-08 19:28:48,478 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=70.2 pTM=0.336 ipTM=0.183 tol=1.4
2024-12-08 19:29:05,082 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=70.6 pTM=0.341 ipTM=0.178 tol=2.43
2024-12-08 19:29:21,684 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=70.6 pTM=0.343 ipTM=0.196 tol=2.82
2024-12-08 19:29:38,276 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=70.4 pTM=0.338 ipTM=0.203 tol=1.39
2024-12-08 19:29:54,882 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=70.1 pTM=0.34 ipTM=0.195 tol=1.34
2024-12-08 19:30:11,482 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=70.2 pTM=0.341 ipTM=0.199 tol=0.795
2024-12-08 19:30:28,092 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=70.1 pTM=0.337 ipTM=0.187 tol=1.35
2024-12-08 19:30:44,709 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=70.1 pTM=0.337 ipTM=0.173 tol=2.72
2024-12-08 19:31:01,329 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=70.2 pTM=0.334 ipTM=0.187 tol=1.2
2024-12-08 19:31:17,928 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=70.1 pTM=0.339 ipTM=0.192 tol=3.06
2024-12-08 19:31:34,564 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=69.6 pTM=0.333 ipTM=0.18 tol=2.24
2024-12-08 19:31:51,169 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=70.1 pTM=0.339 ipTM=0.189 tol=1.42
2024-12-08 19:32:07,759 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=70.1 pTM=0.34 ipTM=0.196 tol=1.05
2024-12-08 19:32:07,760 alphafold2_multimer_v3_model_4_seed_000 took 514.9s (30 recycles)
2024-12-08 19:32:25,015 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.4 pTM=0.316 ipTM=0.11
2024-12-08 19:32:41,727 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.7 pTM=0.315 ipTM=0.112 tol=21.1
2024-12-08 19:32:58,396 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.6 pTM=0.313 ipTM=0.263 tol=27
2024-12-08 19:33:15,095 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=69.5 pTM=0.317 ipTM=0.271 tol=9.91
2024-12-08 19:33:31,742 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=70.2 pTM=0.32 ipTM=0.273 tol=3.63
2024-12-08 19:33:48,410 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=69.5 pTM=0.317 ipTM=0.253 tol=2.1
2024-12-08 19:34:05,068 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.2 pTM=0.317 ipTM=0.223 tol=2.77
2024-12-08 19:34:21,754 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=68.6 pTM=0.315 ipTM=0.19 tol=2.5
2024-12-08 19:34:38,445 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=68.6 pTM=0.315 ipTM=0.163 tol=3.08
2024-12-08 19:34:55,111 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=68.2 pTM=0.314 ipTM=0.16 tol=3.55
2024-12-08 19:35:11,782 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=68.5 pTM=0.315 ipTM=0.139 tol=3.03
2024-12-08 19:35:28,465 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=68.3 pTM=0.314 ipTM=0.147 tol=3.46
2024-12-08 19:35:45,169 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=68.1 pTM=0.316 ipTM=0.147 tol=5.11
2024-12-08 19:36:01,851 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=68.4 pTM=0.317 ipTM=0.12 tol=6.51
2024-12-08 19:36:18,450 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=67.9 pTM=0.322 ipTM=0.309 tol=23.2
2024-12-08 19:36:35,085 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=69.9 pTM=0.338 ipTM=0.341 tol=9.61
2024-12-08 19:36:51,651 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=70.9 pTM=0.351 ipTM=0.351 tol=4.38
2024-12-08 19:37:08,208 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=70.9 pTM=0.355 ipTM=0.354 tol=4.68
2024-12-08 19:37:24,768 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=70.9 pTM=0.354 ipTM=0.354 tol=3.24
2024-12-08 19:37:41,314 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=71.2 pTM=0.361 ipTM=0.362 tol=2.52
2024-12-08 19:37:57,863 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=71.4 pTM=0.359 ipTM=0.356 tol=1.41
2024-12-08 19:38:14,420 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=71.2 pTM=0.36 ipTM=0.359 tol=2.12
2024-12-08 19:38:30,960 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=71.1 pTM=0.358 ipTM=0.356 tol=1.8
2024-12-08 19:38:47,517 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=70.9 pTM=0.359 ipTM=0.359 tol=1.4
2024-12-08 19:39:04,066 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=71.3 pTM=0.362 ipTM=0.361 tol=1.21
2024-12-08 19:39:20,617 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=71.1 pTM=0.361 ipTM=0.359 tol=0.821
2024-12-08 19:39:37,148 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=71.1 pTM=0.36 ipTM=0.356 tol=0.686
2024-12-08 19:39:53,695 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=71.4 pTM=0.362 ipTM=0.358 tol=0.676
2024-12-08 19:40:10,226 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=70.9 pTM=0.358 ipTM=0.355 tol=1.61
2024-12-08 19:40:26,795 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=70.9 pTM=0.364 ipTM=0.362 tol=2.1
2024-12-08 19:40:43,339 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=71.1 pTM=0.364 ipTM=0.363 tol=0.993
2024-12-08 19:40:43,340 alphafold2_multimer_v3_model_5_seed_000 took 515.0s (30 recycles)
2024-12-08 19:40:43,881 reranking models by 'multimer' metric
2024-12-08 19:40:46,866 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 19:41:34,958 Relaxation took 51.1s
2024-12-08 19:41:34,958 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.7 pTM=0.375 ipTM=0.378
2024-12-08 19:42:26,238 Relaxation took 51.3s
2024-12-08 19:42:26,238 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=71.1 pTM=0.364 ipTM=0.363
2024-12-08 19:43:16,844 Relaxation took 50.6s
2024-12-08 19:43:16,844 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=70.1 pTM=0.34 ipTM=0.196
2024-12-08 19:44:20,903 Relaxation took 64.1s
2024-12-08 19:44:20,903 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=68.5 pTM=0.32 ipTM=0.132
2024-12-08 19:45:57,688 Relaxation took 96.8s
2024-12-08 19:45:57,688 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=69.1 pTM=0.31 ipTM=0.118
2024-12-08 19:45:59,356 Done