2024-12-08 19:09:24,773 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 19:09:25,100 Running on GPU
2024-12-08 19:09:28,658 Found 6 citations for tools or databases
2024-12-08 19:09:28,658 Query 1/1: TRAF7_FAM175B (length 1085)
2024-12-08 19:09:28,956 Sleeping for 9s. Reason: PENDING
2024-12-08 19:09:38,218 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:09:43,470 Sleeping for 8s. Reason: RUNNING
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2024-12-08 19:10:12,505 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:10:17,762 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:10:25,026 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:10:30,282 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:10:38,544 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:10:45,808 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:10:53,059 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:10:59,315 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:11:08,576 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:11:15,842 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:11:26,106 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:11:35,363 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:11:41,624 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:11:49,877 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:11:57,137 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:12:05,395 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:12:16,405 Sleeping for 7s. Reason: PENDING
2024-12-08 19:12:23,667 Sleeping for 9s. Reason: PENDING
2024-12-08 19:12:32,926 Sleeping for 7s. Reason: PENDING
2024-12-08 19:12:40,178 Sleeping for 7s. Reason: PENDING
2024-12-08 19:12:47,442 Sleeping for 8s. Reason: PENDING
2024-12-08 19:12:55,708 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:13:05,967 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:13:14,226 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:13:19,481 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:13:25,744 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:13:36,005 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:13:41,252 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:13:50,514 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:13:55,770 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:14:01,024 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:14:09,280 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:14:16,537 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:14:25,798 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:14:36,468 Setting max_seq=508, max_extra_seq=2048
2024-12-08 19:17:49,068 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61.2 pTM=0.36 ipTM=0.163
2024-12-08 19:18:16,293 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=62.8 pTM=0.358 ipTM=0.165 tol=10.6
2024-12-08 19:18:43,633 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=63.4 pTM=0.361 ipTM=0.159 tol=7.92
2024-12-08 19:19:11,049 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=63.7 pTM=0.361 ipTM=0.161 tol=4.18
2024-12-08 19:19:38,563 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=63.5 pTM=0.361 ipTM=0.159 tol=3.85
2024-12-08 19:20:06,120 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=63.5 pTM=0.363 ipTM=0.161 tol=2.94
2024-12-08 19:20:33,702 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=63.3 pTM=0.363 ipTM=0.162 tol=3.21
2024-12-08 19:21:01,323 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=63 pTM=0.363 ipTM=0.161 tol=4.13
2024-12-08 19:21:28,974 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=63 pTM=0.362 ipTM=0.16 tol=2.65
2024-12-08 19:21:56,628 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=62.8 pTM=0.363 ipTM=0.162 tol=3.25
2024-12-08 19:22:24,261 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=63.2 pTM=0.363 ipTM=0.164 tol=2.81
2024-12-08 19:22:51,899 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=63 pTM=0.364 ipTM=0.165 tol=2.94
2024-12-08 19:23:19,556 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=63.2 pTM=0.365 ipTM=0.175 tol=5.38
2024-12-08 19:23:47,221 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=63.1 pTM=0.366 ipTM=0.177 tol=3.38
2024-12-08 19:24:14,870 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=63.2 pTM=0.367 ipTM=0.179 tol=2.05
2024-12-08 19:24:42,532 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=63.1 pTM=0.366 ipTM=0.173 tol=1.62
2024-12-08 19:25:10,183 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=63.5 pTM=0.364 ipTM=0.171 tol=2.68
2024-12-08 19:25:37,843 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=63.3 pTM=0.367 ipTM=0.183 tol=1.97
2024-12-08 19:26:05,517 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=63.2 pTM=0.365 ipTM=0.181 tol=2.64
2024-12-08 19:26:33,169 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=63 pTM=0.367 ipTM=0.177 tol=1.67
2024-12-08 19:27:00,804 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=63 pTM=0.366 ipTM=0.175 tol=1.62
2024-12-08 19:27:28,441 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=63.2 pTM=0.367 ipTM=0.178 tol=1.26
2024-12-08 19:27:56,098 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.9 pTM=0.365 ipTM=0.178 tol=1.51
2024-12-08 19:28:23,741 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=62.7 pTM=0.365 ipTM=0.172 tol=2.76
2024-12-08 19:28:51,393 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.4 pTM=0.365 ipTM=0.175 tol=3.17
2024-12-08 19:29:19,011 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=62.7 pTM=0.365 ipTM=0.178 tol=2.89
2024-12-08 19:29:46,623 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=62.9 pTM=0.365 ipTM=0.17 tol=3.14
2024-12-08 19:30:14,198 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62.6 pTM=0.366 ipTM=0.174 tol=3.19
2024-12-08 19:30:41,787 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62.3 pTM=0.365 ipTM=0.171 tol=2.39
2024-12-08 19:31:09,410 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62.9 pTM=0.364 ipTM=0.178 tol=1.67
2024-12-08 19:31:37,005 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=63 pTM=0.364 ipTM=0.17 tol=1.06
2024-12-08 19:31:37,006 alphafold2_multimer_v3_model_1_seed_000 took 1015.3s (30 recycles)
2024-12-08 19:32:05,393 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.7 pTM=0.363 ipTM=0.162
2024-12-08 19:32:33,094 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=65.2 pTM=0.37 ipTM=0.186 tol=17.5
2024-12-08 19:33:00,793 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=65.4 pTM=0.372 ipTM=0.189 tol=7.66
2024-12-08 19:33:28,510 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=65.1 pTM=0.37 ipTM=0.186 tol=4.68
2024-12-08 19:33:56,240 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=65.1 pTM=0.368 ipTM=0.178 tol=4.27
2024-12-08 19:34:23,963 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=65.2 pTM=0.369 ipTM=0.183 tol=4.22
2024-12-08 19:34:51,706 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=65.3 pTM=0.368 ipTM=0.179 tol=2.11
2024-12-08 19:35:19,443 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=65.3 pTM=0.372 ipTM=0.193 tol=2.58
2024-12-08 19:35:47,226 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=65 pTM=0.37 ipTM=0.186 tol=1.92
2024-12-08 19:36:15,006 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=65.1 pTM=0.371 ipTM=0.187 tol=1.62
2024-12-08 19:36:42,787 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=65.2 pTM=0.37 ipTM=0.186 tol=1.36
2024-12-08 19:37:10,562 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=65.2 pTM=0.371 ipTM=0.188 tol=2.01
2024-12-08 19:37:38,336 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=65.1 pTM=0.367 ipTM=0.177 tol=2.67
2024-12-08 19:38:06,092 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=65.2 pTM=0.37 ipTM=0.184 tol=3.21
2024-12-08 19:38:33,853 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=65.3 pTM=0.369 ipTM=0.181 tol=2.03
2024-12-08 19:39:01,590 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=65.7 pTM=0.372 ipTM=0.192 tol=2.62
2024-12-08 19:39:29,375 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=65.7 pTM=0.369 ipTM=0.183 tol=2.19
2024-12-08 19:39:57,146 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.6 pTM=0.37 ipTM=0.187 tol=4.63
2024-12-08 19:40:24,925 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=65.9 pTM=0.379 ipTM=0.212 tol=2.96
2024-12-08 19:40:52,724 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=65.5 pTM=0.373 ipTM=0.191 tol=2.92
2024-12-08 19:41:20,497 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=65.3 pTM=0.372 ipTM=0.19 tol=2.57
2024-12-08 19:41:48,238 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=65.7 pTM=0.375 ipTM=0.2 tol=3.03
2024-12-08 19:42:15,969 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=65.6 pTM=0.371 ipTM=0.188 tol=2.25
2024-12-08 19:42:43,697 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.5 pTM=0.368 ipTM=0.181 tol=3.38
2024-12-08 19:43:11,413 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=65.4 pTM=0.371 ipTM=0.184 tol=4.04
2024-12-08 19:43:39,152 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=65.3 pTM=0.369 ipTM=0.181 tol=4.6
2024-12-08 19:44:06,907 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=65.2 pTM=0.367 ipTM=0.175 tol=2.61
2024-12-08 19:44:34,652 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=65.1 pTM=0.368 ipTM=0.182 tol=1.69
2024-12-08 19:45:02,414 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=64.9 pTM=0.366 ipTM=0.176 tol=2.53
2024-12-08 19:45:30,185 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=65.4 pTM=0.369 ipTM=0.184 tol=2.62
2024-12-08 19:45:57,979 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=65.3 pTM=0.367 ipTM=0.181 tol=1.46
2024-12-08 19:45:57,980 alphafold2_multimer_v3_model_2_seed_000 took 860.3s (30 recycles)
2024-12-08 19:46:26,456 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=59.2 pTM=0.362 ipTM=0.153
2024-12-08 19:46:54,216 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=60 pTM=0.366 ipTM=0.172 tol=18
2024-12-08 19:47:21,963 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=61.5 pTM=0.367 ipTM=0.179 tol=11.9
2024-12-08 19:47:49,635 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=64.4 pTM=0.37 ipTM=0.406 tol=12.2
2024-12-08 19:48:17,310 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=64.6 pTM=0.372 ipTM=0.407 tol=6.12
2024-12-08 19:48:44,957 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=64.8 pTM=0.371 ipTM=0.437 tol=5.4
2024-12-08 19:49:12,592 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=64.6 pTM=0.372 ipTM=0.429 tol=5.82
2024-12-08 19:49:40,223 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=64.4 pTM=0.369 ipTM=0.415 tol=5.23
2024-12-08 19:50:07,897 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=64.1 pTM=0.372 ipTM=0.395 tol=5.29
2024-12-08 19:50:35,576 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=64.2 pTM=0.372 ipTM=0.408 tol=4.95
2024-12-08 19:51:03,233 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=64.6 pTM=0.374 ipTM=0.418 tol=4.62
2024-12-08 19:51:30,905 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=64.1 pTM=0.372 ipTM=0.404 tol=3.83
2024-12-08 19:51:58,560 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=64.2 pTM=0.371 ipTM=0.397 tol=3.6
2024-12-08 19:52:26,216 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=64.4 pTM=0.372 ipTM=0.406 tol=3.84
2024-12-08 19:52:53,874 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=64.2 pTM=0.375 ipTM=0.401 tol=2.7
2024-12-08 19:53:21,537 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=64.9 pTM=0.373 ipTM=0.425 tol=4.22
2024-12-08 19:53:49,214 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=65.1 pTM=0.374 ipTM=0.431 tol=3.75
2024-12-08 19:54:16,873 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=64.8 pTM=0.376 ipTM=0.418 tol=2.25
2024-12-08 19:54:44,613 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=65.4 pTM=0.379 ipTM=0.441 tol=3.27
2024-12-08 19:55:12,326 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=65 pTM=0.376 ipTM=0.42 tol=2.3
2024-12-08 19:55:40,022 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=65.1 pTM=0.376 ipTM=0.43 tol=4.44
2024-12-08 19:56:07,696 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=64.9 pTM=0.376 ipTM=0.432 tol=3.88
2024-12-08 19:56:35,337 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=65.2 pTM=0.375 ipTM=0.443 tol=2.73
2024-12-08 19:57:02,986 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=64.6 pTM=0.373 ipTM=0.426 tol=3.34
2024-12-08 19:57:30,658 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=65.1 pTM=0.373 ipTM=0.437 tol=3.21
2024-12-08 19:57:58,294 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=64.8 pTM=0.375 ipTM=0.424 tol=3.48
2024-12-08 19:58:25,922 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=64.7 pTM=0.371 ipTM=0.418 tol=3.59
2024-12-08 19:58:53,598 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=64.6 pTM=0.374 ipTM=0.425 tol=3.65
2024-12-08 19:59:21,280 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=64.5 pTM=0.371 ipTM=0.42 tol=3.62
2024-12-08 19:59:49,001 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=64.4 pTM=0.373 ipTM=0.426 tol=3.98
2024-12-08 20:00:16,748 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=64.6 pTM=0.372 ipTM=0.429 tol=3.02
2024-12-08 20:00:16,749 alphafold2_multimer_v3_model_3_seed_000 took 858.0s (30 recycles)
2024-12-08 20:00:45,320 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=59.2 pTM=0.366 ipTM=0.161
2024-12-08 20:01:13,158 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61 pTM=0.365 ipTM=0.222 tol=20.4
2024-12-08 20:01:40,923 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=63.2 pTM=0.374 ipTM=0.254 tol=12.4
2024-12-08 20:02:08,700 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=62.9 pTM=0.376 ipTM=0.226 tol=4.83
2024-12-08 20:02:36,536 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=63.5 pTM=0.369 ipTM=0.194 tol=3.48
2024-12-08 20:03:04,374 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=62.8 pTM=0.372 ipTM=0.193 tol=3.72
2024-12-08 20:03:32,172 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=63.9 pTM=0.369 ipTM=0.272 tol=4.13
2024-12-08 20:04:00,008 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=62.2 pTM=0.368 ipTM=0.194 tol=4.35
2024-12-08 20:04:27,854 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=63.3 pTM=0.365 ipTM=0.175 tol=3.63
2024-12-08 20:04:55,649 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=63.4 pTM=0.387 ipTM=0.226 tol=3.66
2024-12-08 20:05:23,473 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=63.3 pTM=0.378 ipTM=0.208 tol=5.55
2024-12-08 20:05:51,256 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=63.6 pTM=0.378 ipTM=0.277 tol=3.98
2024-12-08 20:06:19,049 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=63.4 pTM=0.374 ipTM=0.217 tol=5.93
2024-12-08 20:06:46,874 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=62.5 pTM=0.371 ipTM=0.19 tol=4.97
2024-12-08 20:07:14,617 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=63.4 pTM=0.371 ipTM=0.189 tol=7.25
2024-12-08 20:07:42,403 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=63 pTM=0.379 ipTM=0.212 tol=6.7
2024-12-08 20:08:10,118 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=63.2 pTM=0.376 ipTM=0.197 tol=6.59
2024-12-08 20:08:37,859 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=63.1 pTM=0.38 ipTM=0.209 tol=4.36
2024-12-08 20:09:05,659 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=63.1 pTM=0.373 ipTM=0.2 tol=4.02
2024-12-08 20:09:33,418 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=63.4 pTM=0.389 ipTM=0.235 tol=3.46
2024-12-08 20:10:01,209 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=62.8 pTM=0.371 ipTM=0.186 tol=3.63
2024-12-08 20:10:28,989 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=62.9 pTM=0.371 ipTM=0.186 tol=3.77
2024-12-08 20:10:56,790 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=62.8 pTM=0.367 ipTM=0.178 tol=4.56
2024-12-08 20:11:24,555 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=63 pTM=0.39 ipTM=0.241 tol=4.48
2024-12-08 20:11:52,298 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=62.7 pTM=0.374 ipTM=0.201 tol=2.08
2024-12-08 20:12:19,992 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.8 pTM=0.397 ipTM=0.336 tol=6.29
2024-12-08 20:12:47,758 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=62.3 pTM=0.372 ipTM=0.202 tol=4.97
2024-12-08 20:13:15,535 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=62.8 pTM=0.37 ipTM=0.186 tol=3.65
2024-12-08 20:13:43,285 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=62.7 pTM=0.371 ipTM=0.227 tol=2.63
2024-12-08 20:14:11,028 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=62.8 pTM=0.375 ipTM=0.199 tol=4.12
2024-12-08 20:14:38,811 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=62.1 pTM=0.367 ipTM=0.18 tol=3.32
2024-12-08 20:14:38,812 alphafold2_multimer_v3_model_4_seed_000 took 861.3s (30 recycles)
2024-12-08 20:15:07,305 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=57.7 pTM=0.367 ipTM=0.173
2024-12-08 20:15:35,083 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=57.6 pTM=0.367 ipTM=0.17 tol=11.2
2024-12-08 20:16:02,912 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=58.7 pTM=0.365 ipTM=0.177 tol=13.8
2024-12-08 20:16:30,766 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=59.6 pTM=0.363 ipTM=0.162 tol=8.66
2024-12-08 20:16:58,644 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=60.6 pTM=0.362 ipTM=0.163 tol=15.4
2024-12-08 20:17:26,476 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61.1 pTM=0.364 ipTM=0.201 tol=7.03
2024-12-08 20:17:54,299 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.5 pTM=0.371 ipTM=0.199 tol=6.99
2024-12-08 20:18:22,131 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61.6 pTM=0.367 ipTM=0.213 tol=5.86
2024-12-08 20:18:49,989 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.7 pTM=0.37 ipTM=0.276 tol=9.01
2024-12-08 20:19:17,841 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.4 pTM=0.371 ipTM=0.29 tol=7.18
2024-12-08 20:19:45,724 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.2 pTM=0.37 ipTM=0.28 tol=5.32
2024-12-08 20:20:13,571 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=61.2 pTM=0.367 ipTM=0.289 tol=6.87
2024-12-08 20:20:41,411 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=61.2 pTM=0.37 ipTM=0.281 tol=6.09
2024-12-08 20:21:09,261 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=61 pTM=0.369 ipTM=0.258 tol=6.62
2024-12-08 20:21:37,086 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61.2 pTM=0.371 ipTM=0.258 tol=6.41
2024-12-08 20:22:04,890 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=61.1 pTM=0.372 ipTM=0.238 tol=9.38
2024-12-08 20:22:32,681 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=61.1 pTM=0.373 ipTM=0.22 tol=4.59
2024-12-08 20:23:00,487 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=60.8 pTM=0.368 ipTM=0.182 tol=5.79
2024-12-08 20:23:28,355 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=61.1 pTM=0.372 ipTM=0.188 tol=5.71
2024-12-08 20:23:56,212 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.1 pTM=0.369 ipTM=0.181 tol=7.05
2024-12-08 20:24:24,070 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=61.2 pTM=0.373 ipTM=0.194 tol=9.48
2024-12-08 20:24:51,930 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.9 pTM=0.368 ipTM=0.179 tol=8.22
2024-12-08 20:25:19,808 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.5 pTM=0.368 ipTM=0.18 tol=7.28
2024-12-08 20:25:47,697 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62 pTM=0.366 ipTM=0.173 tol=5.3
2024-12-08 20:26:15,546 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.8 pTM=0.37 ipTM=0.182 tol=4.49
2024-12-08 20:26:43,383 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.2 pTM=0.371 ipTM=0.204 tol=4.55
2024-12-08 20:27:11,187 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.4 pTM=0.37 ipTM=0.183 tol=3.45
2024-12-08 20:27:39,023 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62 pTM=0.367 ipTM=0.176 tol=2.24
2024-12-08 20:28:06,842 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.2 pTM=0.369 ipTM=0.182 tol=3.44
2024-12-08 20:28:34,690 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.1 pTM=0.367 ipTM=0.177 tol=2.52
2024-12-08 20:29:02,584 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.3 pTM=0.368 ipTM=0.18 tol=2.72
2024-12-08 20:29:02,586 alphafold2_multimer_v3_model_5_seed_000 took 863.0s (30 recycles)
2024-12-08 20:29:03,305 reranking models by 'multimer' metric
2024-12-08 20:29:06,311 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 20:30:44,013 Relaxation took 100.7s
2024-12-08 20:30:44,013 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=64.6 pTM=0.372 ipTM=0.429
2024-12-08 20:32:09,653 Relaxation took 85.6s
2024-12-08 20:32:09,653 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=65.3 pTM=0.367 ipTM=0.181
2024-12-08 20:33:31,249 Relaxation took 81.6s
2024-12-08 20:33:31,249 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.3 pTM=0.368 ipTM=0.18
2024-12-08 20:35:24,439 Relaxation took 113.2s
2024-12-08 20:35:24,440 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=62.1 pTM=0.367 ipTM=0.18
2024-12-08 20:37:00,570 Relaxation took 96.1s
2024-12-08 20:37:00,570 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=63 pTM=0.364 ipTM=0.17
2024-12-08 20:37:02,758 Done