2024-12-08 19:17:05,299 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 19:17:05,603 Running on GPU
2024-12-08 19:17:09,223 Found 6 citations for tools or databases
2024-12-08 19:17:09,223 Query 1/1: TRAF7_HOXB6 (length 894)
2024-12-08 19:17:09,511 Sleeping for 5s. Reason: PENDING
2024-12-08 19:17:14,763 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:17:22,026 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:17:32,293 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:17:38,546 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:17:45,801 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:17:55,063 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:18:02,324 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:18:10,579 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:18:16,833 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:18:26,095 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:18:32,350 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:18:41,611 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:18:50,869 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:18:56,121 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:19:01,378 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:19:10,633 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:19:16,884 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:19:23,152 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:19:28,413 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:19:35,676 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:19:45,940 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:19:52,197 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:20:02,446 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:20:10,828 Sleeping for 10s. Reason: PENDING
2024-12-08 19:20:21,092 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:20:29,355 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:20:39,614 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:20:44,871 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:20:54,500 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:21:02,765 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:21:10,180 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:21:20,446 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:21:29,702 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:21:36,962 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:21:45,215 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:21:56,199 Setting max_seq=508, max_extra_seq=2048
2024-12-08 19:24:38,509 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61.3 pTM=0.424 ipTM=0.25
2024-12-08 19:24:56,304 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=61.9 pTM=0.407 ipTM=0.212 tol=12.6
2024-12-08 19:25:14,125 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61.9 pTM=0.407 ipTM=0.245 tol=11.6
2024-12-08 19:25:31,983 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=62.6 pTM=0.406 ipTM=0.223 tol=4.82
2024-12-08 19:25:49,866 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=62.8 pTM=0.408 ipTM=0.208 tol=3.95
2024-12-08 19:26:07,778 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=62.9 pTM=0.409 ipTM=0.227 tol=2.79
2024-12-08 19:26:25,691 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=62.6 pTM=0.41 ipTM=0.234 tol=2.65
2024-12-08 19:26:43,629 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=63 pTM=0.409 ipTM=0.22 tol=2.86
2024-12-08 19:27:01,568 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=62.7 pTM=0.409 ipTM=0.22 tol=2.31
2024-12-08 19:27:19,516 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=62.9 pTM=0.407 ipTM=0.2 tol=2.19
2024-12-08 19:27:37,466 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.6 pTM=0.409 ipTM=0.206 tol=2.41
2024-12-08 19:27:55,433 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.9 pTM=0.409 ipTM=0.219 tol=1.63
2024-12-08 19:28:13,414 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.9 pTM=0.408 ipTM=0.191 tol=2.29
2024-12-08 19:28:31,381 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=63.2 pTM=0.407 ipTM=0.198 tol=2.64
2024-12-08 19:28:49,377 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=62.9 pTM=0.409 ipTM=0.213 tol=2.7
2024-12-08 19:29:07,364 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.8 pTM=0.41 ipTM=0.208 tol=2.09
2024-12-08 19:29:25,362 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.6 pTM=0.407 ipTM=0.199 tol=2.52
2024-12-08 19:29:43,350 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=62.7 pTM=0.407 ipTM=0.194 tol=1.75
2024-12-08 19:30:01,361 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=62.5 pTM=0.408 ipTM=0.189 tol=1.67
2024-12-08 19:30:19,347 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=62.6 pTM=0.409 ipTM=0.193 tol=1.82
2024-12-08 19:30:37,338 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.4 pTM=0.409 ipTM=0.208 tol=3.05
2024-12-08 19:30:55,338 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=62.5 pTM=0.408 ipTM=0.193 tol=1.79
2024-12-08 19:31:13,354 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.6 pTM=0.409 ipTM=0.211 tol=3.48
2024-12-08 19:31:31,354 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=62.4 pTM=0.409 ipTM=0.206 tol=3.64
2024-12-08 19:31:49,363 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.8 pTM=0.409 ipTM=0.205 tol=2.7
2024-12-08 19:32:07,367 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=62.8 pTM=0.406 ipTM=0.188 tol=1.83
2024-12-08 19:32:25,365 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=63.1 pTM=0.406 ipTM=0.184 tol=2.98
2024-12-08 19:32:43,356 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=62.7 pTM=0.408 ipTM=0.206 tol=3.14
2024-12-08 19:33:01,354 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62.7 pTM=0.408 ipTM=0.215 tol=2.61
2024-12-08 19:33:19,341 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=62.7 pTM=0.408 ipTM=0.197 tol=2.41
2024-12-08 19:33:37,337 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=62.5 pTM=0.407 ipTM=0.19 tol=2.61
2024-12-08 19:33:37,337 alphafold2_multimer_v3_model_1_seed_000 took 695.9s (30 recycles)
2024-12-08 19:33:55,853 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.5 pTM=0.436 ipTM=0.26
2024-12-08 19:34:13,893 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62.9 pTM=0.419 ipTM=0.186 tol=8.21
2024-12-08 19:34:31,943 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=63.2 pTM=0.422 ipTM=0.208 tol=8.62
2024-12-08 19:34:50,016 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63.3 pTM=0.413 ipTM=0.181 tol=5.23
2024-12-08 19:35:08,076 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=63.2 pTM=0.418 ipTM=0.203 tol=4.36
2024-12-08 19:35:26,145 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=63.3 pTM=0.412 ipTM=0.184 tol=4.07
2024-12-08 19:35:44,204 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.3 pTM=0.417 ipTM=0.208 tol=4.31
2024-12-08 19:36:02,269 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.4 pTM=0.416 ipTM=0.204 tol=3.01
2024-12-08 19:36:20,324 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=63.5 pTM=0.416 ipTM=0.206 tol=3.16
2024-12-08 19:36:38,385 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63.2 pTM=0.414 ipTM=0.199 tol=3.26
2024-12-08 19:36:56,425 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.2 pTM=0.415 ipTM=0.207 tol=3.47
2024-12-08 19:37:14,487 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.2 pTM=0.415 ipTM=0.205 tol=3.66
2024-12-08 19:37:32,538 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.3 pTM=0.415 ipTM=0.209 tol=3.28
2024-12-08 19:37:50,601 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.4 pTM=0.413 ipTM=0.202 tol=3.7
2024-12-08 19:38:08,661 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.3 pTM=0.413 ipTM=0.202 tol=2.76
2024-12-08 19:38:26,723 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=63 pTM=0.413 ipTM=0.204 tol=4.73
2024-12-08 19:38:44,805 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.3 pTM=0.41 ipTM=0.191 tol=3.14
2024-12-08 19:39:02,873 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63 pTM=0.411 ipTM=0.193 tol=1.96
2024-12-08 19:39:20,965 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.1 pTM=0.411 ipTM=0.191 tol=2.83
2024-12-08 19:39:39,044 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.2 pTM=0.412 ipTM=0.199 tol=2.43
2024-12-08 19:39:57,137 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=62.7 pTM=0.411 ipTM=0.196 tol=5.84
2024-12-08 19:40:15,199 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63.1 pTM=0.41 ipTM=0.194 tol=4.73
2024-12-08 19:40:33,282 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=62.9 pTM=0.411 ipTM=0.195 tol=3.11
2024-12-08 19:40:51,340 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.2 pTM=0.412 ipTM=0.197 tol=2.98
2024-12-08 19:41:09,421 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=62.9 pTM=0.412 ipTM=0.199 tol=3.69
2024-12-08 19:41:27,485 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=63.1 pTM=0.408 ipTM=0.188 tol=3.19
2024-12-08 19:41:45,556 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=62.9 pTM=0.41 ipTM=0.193 tol=2.82
2024-12-08 19:42:03,618 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.1 pTM=0.41 ipTM=0.193 tol=3.15
2024-12-08 19:42:21,694 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=62.7 pTM=0.414 ipTM=0.208 tol=4.21
2024-12-08 19:42:39,753 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.1 pTM=0.41 ipTM=0.194 tol=4.04
2024-12-08 19:42:57,819 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=62.7 pTM=0.414 ipTM=0.208 tol=3.87
2024-12-08 19:42:57,820 alphafold2_multimer_v3_model_2_seed_000 took 560.0s (30 recycles)
2024-12-08 19:43:16,363 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=61.8 pTM=0.429 ipTM=0.259
2024-12-08 19:43:34,500 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=62.5 pTM=0.41 ipTM=0.368 tol=18.1
2024-12-08 19:43:52,575 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=62.2 pTM=0.414 ipTM=0.203 tol=13.7
2024-12-08 19:44:10,626 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=62.5 pTM=0.417 ipTM=0.212 tol=4.95
2024-12-08 19:44:28,701 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=62 pTM=0.41 ipTM=0.193 tol=7.09
2024-12-08 19:44:46,777 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=61.9 pTM=0.403 ipTM=0.164 tol=6.08
2024-12-08 19:45:04,833 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=62.7 pTM=0.417 ipTM=0.259 tol=6.41
2024-12-08 19:45:22,880 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=62.4 pTM=0.418 ipTM=0.212 tol=3.54
2024-12-08 19:45:40,915 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=62.7 pTM=0.42 ipTM=0.24 tol=2.81
2024-12-08 19:45:58,961 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=62.2 pTM=0.418 ipTM=0.218 tol=3.89
2024-12-08 19:46:17,005 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=62.4 pTM=0.422 ipTM=0.228 tol=4.26
2024-12-08 19:46:35,069 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=62.2 pTM=0.418 ipTM=0.212 tol=3.38
2024-12-08 19:46:53,117 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=62.6 pTM=0.42 ipTM=0.221 tol=4.14
2024-12-08 19:47:11,175 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=62.5 pTM=0.418 ipTM=0.216 tol=5.11
2024-12-08 19:47:29,234 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=62.3 pTM=0.419 ipTM=0.222 tol=4.77
2024-12-08 19:47:47,306 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.2 pTM=0.416 ipTM=0.21 tol=4.44
2024-12-08 19:48:05,378 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=62.4 pTM=0.417 ipTM=0.217 tol=3.36
2024-12-08 19:48:23,437 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62.4 pTM=0.418 ipTM=0.216 tol=2.77
2024-12-08 19:48:41,499 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=62.3 pTM=0.418 ipTM=0.218 tol=5.2
2024-12-08 19:48:59,608 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62 pTM=0.41 ipTM=0.188 tol=8.81
2024-12-08 19:49:17,680 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.2 pTM=0.417 ipTM=0.214 tol=8.03
2024-12-08 19:49:35,740 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=62.6 pTM=0.414 ipTM=0.203 tol=6.32
2024-12-08 19:49:53,811 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=63 pTM=0.414 ipTM=0.202 tol=5.67
2024-12-08 19:50:11,886 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=62.8 pTM=0.414 ipTM=0.204 tol=6.05
2024-12-08 19:50:29,964 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=62.9 pTM=0.413 ipTM=0.201 tol=3.56
2024-12-08 19:50:48,022 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=62.7 pTM=0.414 ipTM=0.205 tol=3.58
2024-12-08 19:51:06,096 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.9 pTM=0.413 ipTM=0.197 tol=7.88
2024-12-08 19:51:24,186 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=62.2 pTM=0.416 ipTM=0.211 tol=5.73
2024-12-08 19:51:42,280 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62.3 pTM=0.412 ipTM=0.196 tol=5.4
2024-12-08 19:52:00,356 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=62.5 pTM=0.417 ipTM=0.215 tol=6.17
2024-12-08 19:52:18,452 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=62.2 pTM=0.415 ipTM=0.207 tol=7.27
2024-12-08 19:52:18,453 alphafold2_multimer_v3_model_3_seed_000 took 560.1s (30 recycles)
2024-12-08 19:52:37,106 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=61.2 pTM=0.429 ipTM=0.242
2024-12-08 19:52:55,259 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61.7 pTM=0.414 ipTM=0.156 tol=13.5
2024-12-08 19:53:13,373 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=62.5 pTM=0.415 ipTM=0.169 tol=9.41
2024-12-08 19:53:31,472 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=62.5 pTM=0.425 ipTM=0.183 tol=8.55
2024-12-08 19:53:49,541 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=63.4 pTM=0.439 ipTM=0.184 tol=7.35
2024-12-08 19:54:07,584 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=64.4 pTM=0.464 ipTM=0.192 tol=7.64
2024-12-08 19:54:25,622 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=64.4 pTM=0.469 ipTM=0.191 tol=8.37
2024-12-08 19:54:43,651 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=64.6 pTM=0.468 ipTM=0.185 tol=7.76
2024-12-08 19:55:01,688 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=64.8 pTM=0.471 ipTM=0.191 tol=8.6
2024-12-08 19:55:19,716 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=64.1 pTM=0.463 ipTM=0.186 tol=6.45
2024-12-08 19:55:37,744 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=64.7 pTM=0.46 ipTM=0.18 tol=4.7
2024-12-08 19:55:55,755 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=64.3 pTM=0.462 ipTM=0.189 tol=5.77
2024-12-08 19:56:13,790 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=65.1 pTM=0.465 ipTM=0.187 tol=5.63
2024-12-08 19:56:31,795 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=64.4 pTM=0.461 ipTM=0.186 tol=5.98
2024-12-08 19:56:49,810 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.1 pTM=0.464 ipTM=0.186 tol=5.44
2024-12-08 19:57:07,813 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=64.1 pTM=0.465 ipTM=0.213 tol=7.44
2024-12-08 19:57:25,832 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=64.4 pTM=0.458 ipTM=0.182 tol=5.45
2024-12-08 19:57:43,853 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=64.4 pTM=0.458 ipTM=0.183 tol=3.72
2024-12-08 19:58:01,879 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=64.2 pTM=0.456 ipTM=0.182 tol=3.34
2024-12-08 19:58:19,905 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.1 pTM=0.463 ipTM=0.177 tol=5.96
2024-12-08 19:58:37,928 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=64.4 pTM=0.463 ipTM=0.193 tol=6.7
2024-12-08 19:58:55,947 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=64.8 pTM=0.467 ipTM=0.189 tol=4.9
2024-12-08 19:59:13,971 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=64.6 pTM=0.466 ipTM=0.192 tol=2.99
2024-12-08 19:59:31,986 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=64.7 pTM=0.466 ipTM=0.187 tol=4.7
2024-12-08 19:59:50,011 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=64.8 pTM=0.467 ipTM=0.189 tol=4.3
2024-12-08 20:00:08,008 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=64.8 pTM=0.465 ipTM=0.183 tol=3.36
2024-12-08 20:00:26,024 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=64.8 pTM=0.467 ipTM=0.192 tol=4.39
2024-12-08 20:00:44,040 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=64.2 pTM=0.46 ipTM=0.186 tol=4.24
2024-12-08 20:01:02,055 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=64.9 pTM=0.466 ipTM=0.189 tol=5.87
2024-12-08 20:01:20,070 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=64.6 pTM=0.465 ipTM=0.186 tol=4.68
2024-12-08 20:01:38,094 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=64.6 pTM=0.464 ipTM=0.198 tol=4.79
2024-12-08 20:01:38,095 alphafold2_multimer_v3_model_4_seed_000 took 559.1s (30 recycles)
2024-12-08 20:01:56,682 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=60.7 pTM=0.418 ipTM=0.244
2024-12-08 20:02:14,782 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=62.2 pTM=0.404 ipTM=0.207 tol=14.8
2024-12-08 20:02:32,909 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=62.7 pTM=0.408 ipTM=0.178 tol=8.47
2024-12-08 20:02:51,002 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=62.3 pTM=0.411 ipTM=0.186 tol=6.39
2024-12-08 20:03:09,089 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=62.6 pTM=0.404 ipTM=0.162 tol=4.74
2024-12-08 20:03:27,165 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.6 pTM=0.406 ipTM=0.173 tol=4.11
2024-12-08 20:03:45,231 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=62.3 pTM=0.41 ipTM=0.187 tol=4.82
2024-12-08 20:04:03,279 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=62.8 pTM=0.405 ipTM=0.169 tol=4.21
2024-12-08 20:04:21,349 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62.7 pTM=0.407 ipTM=0.182 tol=4.18
2024-12-08 20:04:39,427 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.4 pTM=0.408 ipTM=0.181 tol=2.94
2024-12-08 20:04:57,491 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.7 pTM=0.406 ipTM=0.172 tol=2.29
2024-12-08 20:05:15,575 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.9 pTM=0.403 ipTM=0.16 tol=2.43
2024-12-08 20:05:33,653 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=63 pTM=0.406 ipTM=0.174 tol=2.96
2024-12-08 20:05:51,732 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.9 pTM=0.406 ipTM=0.174 tol=2.82
2024-12-08 20:06:09,805 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.7 pTM=0.411 ipTM=0.191 tol=3.41
2024-12-08 20:06:27,894 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.9 pTM=0.405 ipTM=0.171 tol=3.9
2024-12-08 20:06:45,964 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.9 pTM=0.406 ipTM=0.176 tol=6.01
2024-12-08 20:07:04,046 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=63.2 pTM=0.405 ipTM=0.181 tol=5.11
2024-12-08 20:07:22,139 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=63.2 pTM=0.403 ipTM=0.163 tol=4.71
2024-12-08 20:07:40,229 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.9 pTM=0.404 ipTM=0.166 tol=4.65
2024-12-08 20:07:58,323 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.6 pTM=0.407 ipTM=0.177 tol=4.76
2024-12-08 20:08:16,415 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=63 pTM=0.401 ipTM=0.157 tol=5.53
2024-12-08 20:08:34,513 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.9 pTM=0.407 ipTM=0.183 tol=5.62
2024-12-08 20:08:52,607 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.8 pTM=0.405 ipTM=0.175 tol=3.8
2024-12-08 20:09:10,712 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=63 pTM=0.405 ipTM=0.174 tol=3.39
2024-12-08 20:09:28,806 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.9 pTM=0.404 ipTM=0.168 tol=3.88
2024-12-08 20:09:46,912 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.9 pTM=0.407 ipTM=0.18 tol=3.42
2024-12-08 20:10:05,023 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.8 pTM=0.407 ipTM=0.182 tol=3.51
2024-12-08 20:10:23,137 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.8 pTM=0.406 ipTM=0.175 tol=4.33
2024-12-08 20:10:41,230 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.9 pTM=0.406 ipTM=0.177 tol=2.47
2024-12-08 20:10:59,321 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=63 pTM=0.405 ipTM=0.171 tol=3.94
2024-12-08 20:10:59,322 alphafold2_multimer_v3_model_5_seed_000 took 560.7s (30 recycles)
2024-12-08 20:10:59,827 reranking models by 'multimer' metric
2024-12-08 20:11:02,401 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 20:12:29,656 Relaxation took 89.8s
2024-12-08 20:12:29,657 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=64.6 pTM=0.464 ipTM=0.198
2024-12-08 20:13:56,911 Relaxation took 87.3s
2024-12-08 20:13:56,911 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=62.7 pTM=0.414 ipTM=0.208
2024-12-08 20:15:04,459 Relaxation took 67.5s
2024-12-08 20:15:04,460 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=62.2 pTM=0.415 ipTM=0.207
2024-12-08 20:16:12,669 Relaxation took 68.2s
2024-12-08 20:16:12,670 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=62.5 pTM=0.407 ipTM=0.19
2024-12-08 20:16:53,801 Relaxation took 41.1s
2024-12-08 20:16:53,801 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=63 pTM=0.405 ipTM=0.171
2024-12-08 20:16:55,536 Done