2024-12-08 19:24:53,608 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 19:24:53,968 Running on GPU
2024-12-08 19:24:57,831 Found 6 citations for tools or databases
2024-12-08 19:24:57,831 Query 1/1: TRAF7_RALY (length 976)
2024-12-08 19:24:58,161 Sleeping for 9s. Reason: PENDING
2024-12-08 19:25:07,427 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:25:15,682 Sleeping for 9s. Reason: RUNNING
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2024-12-08 19:25:45,713 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:25:55,976 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:26:06,237 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:26:11,493 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:26:19,756 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:26:27,023 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:26:37,288 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:26:44,554 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:26:53,812 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:27:02,072 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:27:08,326 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:27:17,586 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:27:24,849 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:27:32,118 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:27:42,387 Sleeping for 9s. Reason: RUNNING
2024-12-08 19:27:51,647 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:27:59,907 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:28:05,166 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:28:15,423 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:28:24,343 Sleeping for 9s. Reason: PENDING
2024-12-08 19:28:33,609 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:28:43,871 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:28:49,127 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:28:54,382 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:29:04,642 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:29:10,904 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:29:17,164 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:29:25,418 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:29:33,676 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:29:39,937 Sleeping for 10s. Reason: RUNNING
2024-12-08 19:29:50,205 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:29:57,460 Sleeping for 5s. Reason: RUNNING
2024-12-08 19:30:02,712 Sleeping for 6s. Reason: RUNNING
2024-12-08 19:30:08,967 Sleeping for 7s. Reason: RUNNING
2024-12-08 19:30:16,231 Sleeping for 8s. Reason: RUNNING
2024-12-08 19:30:27,868 Setting max_seq=508, max_extra_seq=2048
2024-12-08 19:33:11,184 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61 pTM=0.383 ipTM=0.179
2024-12-08 19:33:32,919 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=61.4 pTM=0.393 ipTM=0.189 tol=11.1
2024-12-08 19:33:54,684 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=61.2 pTM=0.396 ipTM=0.193 tol=7.41
2024-12-08 19:34:16,501 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61.2 pTM=0.396 ipTM=0.197 tol=5.23
2024-12-08 19:34:38,323 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=61.2 pTM=0.398 ipTM=0.217 tol=2.77
2024-12-08 19:35:00,171 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=61.4 pTM=0.399 ipTM=0.203 tol=3.82
2024-12-08 19:35:22,018 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=61.8 pTM=0.401 ipTM=0.228 tol=1.63
2024-12-08 19:35:43,890 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=61.2 pTM=0.4 ipTM=0.205 tol=1.75
2024-12-08 19:36:05,764 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=61.6 pTM=0.4 ipTM=0.219 tol=1.83
2024-12-08 19:36:27,647 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=61.2 pTM=0.399 ipTM=0.201 tol=1.78
2024-12-08 19:36:49,537 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=61.2 pTM=0.399 ipTM=0.214 tol=1.79
2024-12-08 19:37:11,444 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=60.9 pTM=0.399 ipTM=0.204 tol=2.01
2024-12-08 19:37:33,341 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=61.2 pTM=0.401 ipTM=0.226 tol=3.32
2024-12-08 19:37:55,236 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.3 pTM=0.405 ipTM=0.261 tol=2.87
2024-12-08 19:38:17,121 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61.1 pTM=0.405 ipTM=0.246 tol=1.55
2024-12-08 19:38:39,016 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=60.9 pTM=0.407 ipTM=0.283 tol=1.63
2024-12-08 19:39:00,910 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=60.9 pTM=0.407 ipTM=0.273 tol=2.43
2024-12-08 19:39:22,805 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=61.3 pTM=0.405 ipTM=0.269 tol=2.79
2024-12-08 19:39:44,694 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=61.4 pTM=0.406 ipTM=0.272 tol=2.85
2024-12-08 19:40:06,601 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=61.5 pTM=0.406 ipTM=0.277 tol=2.43
2024-12-08 19:40:28,496 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=61.3 pTM=0.406 ipTM=0.26 tol=1.37
2024-12-08 19:40:50,388 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61.1 pTM=0.406 ipTM=0.281 tol=1.57
2024-12-08 19:41:12,286 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.1 pTM=0.407 ipTM=0.284 tol=1.96
2024-12-08 19:41:34,177 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=61 pTM=0.407 ipTM=0.27 tol=4
2024-12-08 19:41:56,073 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=61 pTM=0.408 ipTM=0.279 tol=4.19
2024-12-08 19:42:17,995 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=60.9 pTM=0.407 ipTM=0.286 tol=2.15
2024-12-08 19:42:39,883 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.9 pTM=0.406 ipTM=0.264 tol=1.6
2024-12-08 19:43:01,773 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=60.8 pTM=0.407 ipTM=0.284 tol=3.67
2024-12-08 19:43:23,661 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=60.8 pTM=0.406 ipTM=0.264 tol=2.49
2024-12-08 19:43:45,557 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=60.9 pTM=0.406 ipTM=0.279 tol=3.41
2024-12-08 19:44:07,446 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=60.4 pTM=0.406 ipTM=0.281 tol=1.58
2024-12-08 19:44:07,447 alphafold2_multimer_v3_model_1_seed_000 took 812.9s (30 recycles)
2024-12-08 19:44:30,127 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=61.5 pTM=0.395 ipTM=0.19
2024-12-08 19:44:52,060 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62.4 pTM=0.394 ipTM=0.246 tol=12
2024-12-08 19:45:14,010 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=63.5 pTM=0.394 ipTM=0.23 tol=9.41
2024-12-08 19:45:35,945 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63.7 pTM=0.393 ipTM=0.218 tol=5.89
2024-12-08 19:45:57,893 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=63.9 pTM=0.393 ipTM=0.224 tol=3.23
2024-12-08 19:46:19,840 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=63.9 pTM=0.392 ipTM=0.216 tol=2.69
2024-12-08 19:46:41,791 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.9 pTM=0.393 ipTM=0.225 tol=2.07
2024-12-08 19:47:03,744 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.9 pTM=0.393 ipTM=0.213 tol=2.01
2024-12-08 19:47:25,693 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=64.1 pTM=0.393 ipTM=0.227 tol=2.67
2024-12-08 19:47:47,650 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63.9 pTM=0.393 ipTM=0.212 tol=1.93
2024-12-08 19:48:09,602 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.8 pTM=0.394 ipTM=0.218 tol=1.43
2024-12-08 19:48:31,555 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.7 pTM=0.394 ipTM=0.214 tol=1.91
2024-12-08 19:48:53,506 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.6 pTM=0.395 ipTM=0.219 tol=1.9
2024-12-08 19:49:15,447 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.8 pTM=0.394 ipTM=0.217 tol=1.57
2024-12-08 19:49:37,393 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.8 pTM=0.395 ipTM=0.229 tol=0.997
2024-12-08 19:49:59,339 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=63.7 pTM=0.396 ipTM=0.218 tol=1.96
2024-12-08 19:50:21,290 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.9 pTM=0.396 ipTM=0.219 tol=1.45
2024-12-08 19:50:43,235 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=64 pTM=0.396 ipTM=0.212 tol=1.69
2024-12-08 19:51:05,189 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=64 pTM=0.395 ipTM=0.218 tol=1.23
2024-12-08 19:51:27,137 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.8 pTM=0.395 ipTM=0.219 tol=2.06
2024-12-08 19:51:49,096 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=64.1 pTM=0.395 ipTM=0.223 tol=1.74
2024-12-08 19:52:11,032 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=64 pTM=0.394 ipTM=0.21 tol=1.18
2024-12-08 19:52:32,976 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=64 pTM=0.395 ipTM=0.227 tol=1.43
2024-12-08 19:52:54,911 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=64 pTM=0.394 ipTM=0.216 tol=1.38
2024-12-08 19:53:16,861 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=64 pTM=0.394 ipTM=0.219 tol=1.23
2024-12-08 19:53:38,803 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=64.1 pTM=0.393 ipTM=0.212 tol=0.984
2024-12-08 19:54:00,751 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=64 pTM=0.394 ipTM=0.222 tol=1.36
2024-12-08 19:54:22,679 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.8 pTM=0.393 ipTM=0.213 tol=1.24
2024-12-08 19:54:44,648 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.9 pTM=0.394 ipTM=0.217 tol=1.86
2024-12-08 19:55:06,594 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.9 pTM=0.392 ipTM=0.21 tol=1.3
2024-12-08 19:55:28,534 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.6 pTM=0.392 ipTM=0.215 tol=1.48
2024-12-08 19:55:28,535 alphafold2_multimer_v3_model_2_seed_000 took 680.3s (30 recycles)
2024-12-08 19:55:51,262 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.4 pTM=0.392 ipTM=0.177
2024-12-08 19:56:13,274 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=61.4 pTM=0.392 ipTM=0.191 tol=18
2024-12-08 19:56:35,263 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=61.8 pTM=0.394 ipTM=0.199 tol=15.2
2024-12-08 19:56:57,275 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=61.7 pTM=0.394 ipTM=0.184 tol=6.75
2024-12-08 19:57:19,267 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.7 pTM=0.395 ipTM=0.188 tol=5.19
2024-12-08 19:57:41,258 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=61.7 pTM=0.395 ipTM=0.194 tol=3.75
2024-12-08 19:58:03,237 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=61.5 pTM=0.395 ipTM=0.196 tol=5.61
2024-12-08 19:58:25,237 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=61.6 pTM=0.396 ipTM=0.198 tol=5.73
2024-12-08 19:58:47,232 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=61.7 pTM=0.395 ipTM=0.201 tol=2.89
2024-12-08 19:59:09,236 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61.3 pTM=0.396 ipTM=0.193 tol=2.57
2024-12-08 19:59:31,218 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=61.1 pTM=0.396 ipTM=0.196 tol=1.87
2024-12-08 19:59:53,223 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=61.2 pTM=0.396 ipTM=0.196 tol=2.71
2024-12-08 20:00:15,207 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=61.1 pTM=0.395 ipTM=0.199 tol=3.07
2024-12-08 20:00:37,213 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.9 pTM=0.396 ipTM=0.196 tol=5.36
2024-12-08 20:00:59,207 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.1 pTM=0.395 ipTM=0.197 tol=5.3
2024-12-08 20:01:21,237 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61 pTM=0.396 ipTM=0.198 tol=2.54
2024-12-08 20:01:43,234 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61.2 pTM=0.396 ipTM=0.201 tol=2.4
2024-12-08 20:02:05,259 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.2 pTM=0.398 ipTM=0.197 tol=3.58
2024-12-08 20:02:27,287 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.3 pTM=0.396 ipTM=0.19 tol=3.75
2024-12-08 20:02:49,317 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=61 pTM=0.397 ipTM=0.195 tol=3.06
2024-12-08 20:03:11,353 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=61.2 pTM=0.396 ipTM=0.193 tol=2.79
2024-12-08 20:03:33,365 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=61 pTM=0.396 ipTM=0.195 tol=2.23
2024-12-08 20:03:55,381 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=61 pTM=0.396 ipTM=0.203 tol=2.88
2024-12-08 20:04:17,382 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61.1 pTM=0.396 ipTM=0.199 tol=2.61
2024-12-08 20:04:39,428 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=60.5 pTM=0.395 ipTM=0.206 tol=3.46
2024-12-08 20:05:01,460 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=59.9 pTM=0.392 ipTM=0.201 tol=6.01
2024-12-08 20:05:23,469 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=59.7 pTM=0.391 ipTM=0.204 tol=8.16
2024-12-08 20:05:45,456 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.4 pTM=0.395 ipTM=0.202 tol=7.64
2024-12-08 20:06:07,427 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=61.4 pTM=0.396 ipTM=0.227 tol=6.14
2024-12-08 20:06:29,433 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61.8 pTM=0.395 ipTM=0.233 tol=5.24
2024-12-08 20:06:51,412 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.8 pTM=0.395 ipTM=0.234 tol=4.23
2024-12-08 20:06:51,413 alphafold2_multimer_v3_model_3_seed_000 took 682.1s (30 recycles)
2024-12-08 20:07:14,237 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=59.5 pTM=0.393 ipTM=0.213
2024-12-08 20:07:36,262 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=60.7 pTM=0.398 ipTM=0.193 tol=11.9
2024-12-08 20:07:58,290 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=61.3 pTM=0.398 ipTM=0.193 tol=9.6
2024-12-08 20:08:20,311 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=62 pTM=0.403 ipTM=0.176 tol=9.57
2024-12-08 20:08:42,305 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=62.8 pTM=0.413 ipTM=0.185 tol=17.7
2024-12-08 20:09:04,248 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=63.2 pTM=0.43 ipTM=0.193 tol=4.77
2024-12-08 20:09:26,229 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=63.8 pTM=0.446 ipTM=0.232 tol=4.14
2024-12-08 20:09:48,156 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=63.9 pTM=0.447 ipTM=0.222 tol=3
2024-12-08 20:10:10,083 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=63.8 pTM=0.449 ipTM=0.229 tol=4.42
2024-12-08 20:10:32,014 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=63.4 pTM=0.451 ipTM=0.217 tol=4.16
2024-12-08 20:10:53,942 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=63.4 pTM=0.45 ipTM=0.225 tol=2.74
2024-12-08 20:11:15,865 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=63.4 pTM=0.446 ipTM=0.216 tol=2.94
2024-12-08 20:11:37,812 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=63.2 pTM=0.447 ipTM=0.216 tol=3.9
2024-12-08 20:11:59,744 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=63.3 pTM=0.444 ipTM=0.201 tol=3.13
2024-12-08 20:12:21,688 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=63.2 pTM=0.447 ipTM=0.211 tol=2.11
2024-12-08 20:12:43,610 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=63.3 pTM=0.448 ipTM=0.208 tol=1.96
2024-12-08 20:13:05,537 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=63.3 pTM=0.449 ipTM=0.221 tol=2
2024-12-08 20:13:27,472 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=63.2 pTM=0.448 ipTM=0.212 tol=2.18
2024-12-08 20:13:49,401 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=63.4 pTM=0.448 ipTM=0.217 tol=2.75
2024-12-08 20:14:11,327 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=63.4 pTM=0.453 ipTM=0.214 tol=5.27
2024-12-08 20:14:33,268 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=63.4 pTM=0.456 ipTM=0.218 tol=4.39
2024-12-08 20:14:55,210 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=63.3 pTM=0.451 ipTM=0.21 tol=2.97
2024-12-08 20:15:17,133 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=63.8 pTM=0.455 ipTM=0.231 tol=2.15
2024-12-08 20:15:39,059 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=63.3 pTM=0.45 ipTM=0.222 tol=1.69
2024-12-08 20:16:00,994 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=63.6 pTM=0.455 ipTM=0.23 tol=2.66
2024-12-08 20:16:22,920 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=63.4 pTM=0.451 ipTM=0.215 tol=2.99
2024-12-08 20:16:44,854 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=63.1 pTM=0.447 ipTM=0.214 tol=3.14
2024-12-08 20:17:06,790 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=62.9 pTM=0.447 ipTM=0.211 tol=3.05
2024-12-08 20:17:28,725 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=63.3 pTM=0.448 ipTM=0.223 tol=1.71
2024-12-08 20:17:50,669 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=63 pTM=0.448 ipTM=0.212 tol=1.23
2024-12-08 20:18:12,602 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=63.2 pTM=0.451 ipTM=0.218 tol=2.12
2024-12-08 20:18:12,602 alphafold2_multimer_v3_model_4_seed_000 took 680.4s (30 recycles)
2024-12-08 20:18:35,403 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=60.1 pTM=0.39 ipTM=0.179
2024-12-08 20:18:57,466 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=60.6 pTM=0.392 ipTM=0.186 tol=11.5
2024-12-08 20:19:19,530 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=60.9 pTM=0.391 ipTM=0.213 tol=9.26
2024-12-08 20:19:41,586 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=60.8 pTM=0.393 ipTM=0.183 tol=8.7
2024-12-08 20:20:03,650 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.1 pTM=0.391 ipTM=0.177 tol=3.81
2024-12-08 20:20:25,714 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61.3 pTM=0.389 ipTM=0.186 tol=5.04
2024-12-08 20:20:47,773 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.3 pTM=0.39 ipTM=0.184 tol=4.83
2024-12-08 20:21:09,835 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61.2 pTM=0.39 ipTM=0.169 tol=4.85
2024-12-08 20:21:31,887 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=61.6 pTM=0.388 ipTM=0.179 tol=6.48
2024-12-08 20:21:53,938 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.5 pTM=0.389 ipTM=0.17 tol=5.38
2024-12-08 20:22:15,979 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.8 pTM=0.388 ipTM=0.184 tol=5.36
2024-12-08 20:22:38,018 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=61.5 pTM=0.39 ipTM=0.185 tol=5.31
2024-12-08 20:23:00,052 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=61.9 pTM=0.389 ipTM=0.189 tol=2.59
2024-12-08 20:23:22,094 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62 pTM=0.39 ipTM=0.179 tol=4.59
2024-12-08 20:23:44,161 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.1 pTM=0.389 ipTM=0.17 tol=3.92
2024-12-08 20:24:06,289 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=61.8 pTM=0.389 ipTM=0.186 tol=4.96
2024-12-08 20:24:28,464 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.1 pTM=0.389 ipTM=0.183 tol=2.86
2024-12-08 20:24:50,674 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=61.9 pTM=0.389 ipTM=0.176 tol=3.39
2024-12-08 20:25:12,859 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62 pTM=0.389 ipTM=0.175 tol=3.11
2024-12-08 20:25:35,010 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.7 pTM=0.389 ipTM=0.192 tol=4.73
2024-12-08 20:25:57,166 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=61.9 pTM=0.389 ipTM=0.173 tol=4.46
2024-12-08 20:26:19,259 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=61.5 pTM=0.39 ipTM=0.204 tol=4.01
2024-12-08 20:26:41,384 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=61.7 pTM=0.39 ipTM=0.186 tol=2.74
2024-12-08 20:27:03,469 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=61.7 pTM=0.39 ipTM=0.201 tol=1.8
2024-12-08 20:27:25,552 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.6 pTM=0.39 ipTM=0.171 tol=2.6
2024-12-08 20:27:47,624 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=61.7 pTM=0.391 ipTM=0.189 tol=2.57
2024-12-08 20:28:09,701 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=61.9 pTM=0.389 ipTM=0.177 tol=4.1
2024-12-08 20:28:31,794 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62 pTM=0.389 ipTM=0.175 tol=3.16
2024-12-08 20:28:53,842 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62 pTM=0.39 ipTM=0.176 tol=2.35
2024-12-08 20:29:15,953 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=61.8 pTM=0.389 ipTM=0.174 tol=1.84
2024-12-08 20:29:38,042 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=61.9 pTM=0.389 ipTM=0.181 tol=5.42
2024-12-08 20:29:38,043 alphafold2_multimer_v3_model_5_seed_000 took 684.7s (30 recycles)
2024-12-08 20:29:38,795 reranking models by 'multimer' metric
2024-12-08 20:29:40,169 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 20:31:54,829 Relaxation took 136.0s
2024-12-08 20:31:54,829 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=60.4 pTM=0.406 ipTM=0.281
2024-12-08 20:33:22,428 Relaxation took 87.6s
2024-12-08 20:33:22,428 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.8 pTM=0.395 ipTM=0.234
2024-12-08 20:35:04,945 Relaxation took 102.5s
2024-12-08 20:35:04,946 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=63.2 pTM=0.451 ipTM=0.218
2024-12-08 20:36:43,154 Relaxation took 98.2s
2024-12-08 20:36:43,154 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.6 pTM=0.392 ipTM=0.215
2024-12-08 20:38:42,578 Relaxation took 119.4s
2024-12-08 20:38:42,579 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=61.9 pTM=0.389 ipTM=0.181
2024-12-08 20:38:44,751 Done