2024-12-08 20:38:35,110 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-08 20:38:35,414 Running on GPU
2024-12-08 20:38:36,627 Found 6 citations for tools or databases
2024-12-08 20:38:36,627 Query 1/1: TRIM11_HOXA5 (length 738)
2024-12-08 20:38:36,897 Sleeping for 6s. Reason: PENDING
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2024-12-08 20:41:37,846 Sleeping for 7s. Reason: RUNNING
2024-12-08 20:41:46,871 Sleeping for 8s. Reason: PENDING
2024-12-08 20:41:55,128 Sleeping for 8s. Reason: RUNNING
2024-12-08 20:42:03,387 Sleeping for 8s. Reason: RUNNING
2024-12-08 20:42:11,642 Sleeping for 7s. Reason: RUNNING
2024-12-08 20:42:18,899 Sleeping for 7s. Reason: RUNNING
2024-12-08 20:42:26,153 Sleeping for 6s. Reason: RUNNING
2024-12-08 20:42:32,408 Sleeping for 9s. Reason: RUNNING
2024-12-08 20:42:41,673 Sleeping for 8s. Reason: RUNNING
2024-12-08 20:42:49,940 Sleeping for 5s. Reason: RUNNING
2024-12-08 20:42:55,193 Sleeping for 8s. Reason: RUNNING
2024-12-08 20:43:03,457 Sleeping for 10s. Reason: RUNNING
2024-12-08 20:43:13,715 Sleeping for 5s. Reason: RUNNING
2024-12-08 20:43:22,605 Setting max_seq=508, max_extra_seq=2048
2024-12-08 20:45:57,505 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61.7 pTM=0.414 ipTM=0.15
2024-12-08 20:46:08,540 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.8 pTM=0.374 ipTM=0.15 tol=17.4
2024-12-08 20:46:19,598 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=59 pTM=0.367 ipTM=0.187 tol=7.95
2024-12-08 20:46:30,671 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=59.4 pTM=0.37 ipTM=0.206 tol=6.41
2024-12-08 20:46:41,762 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=59.2 pTM=0.367 ipTM=0.225 tol=2.91
2024-12-08 20:46:52,869 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.1 pTM=0.365 ipTM=0.226 tol=2.02
2024-12-08 20:47:03,981 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=58.8 pTM=0.361 ipTM=0.216 tol=2.16
2024-12-08 20:47:15,102 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.9 pTM=0.361 ipTM=0.236 tol=1.66
2024-12-08 20:47:26,237 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59.1 pTM=0.365 ipTM=0.233 tol=2.2
2024-12-08 20:47:37,379 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=59.1 pTM=0.36 ipTM=0.233 tol=2.3
2024-12-08 20:47:48,517 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=59.1 pTM=0.361 ipTM=0.224 tol=2.28
2024-12-08 20:47:59,668 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.2 pTM=0.347 ipTM=0.232 tol=2.41
2024-12-08 20:48:10,840 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.4 pTM=0.341 ipTM=0.217 tol=2.5
2024-12-08 20:48:22,005 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.5 pTM=0.348 ipTM=0.222 tol=1.34
2024-12-08 20:48:33,170 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.5 pTM=0.351 ipTM=0.222 tol=1.12
2024-12-08 20:48:44,339 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.9 pTM=0.356 ipTM=0.23 tol=1.58
2024-12-08 20:48:55,509 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=58.5 pTM=0.354 ipTM=0.235 tol=1.24
2024-12-08 20:49:06,687 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.4 pTM=0.346 ipTM=0.222 tol=1.78
2024-12-08 20:49:17,867 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.8 pTM=0.354 ipTM=0.225 tol=2.37
2024-12-08 20:49:29,037 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.7 pTM=0.361 ipTM=0.232 tol=2.71
2024-12-08 20:49:40,211 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=59.2 pTM=0.361 ipTM=0.234 tol=2.87
2024-12-08 20:49:51,401 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59.2 pTM=0.362 ipTM=0.245 tol=1.89
2024-12-08 20:50:02,592 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=59.2 pTM=0.361 ipTM=0.228 tol=1.71
2024-12-08 20:50:13,774 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.9 pTM=0.358 ipTM=0.237 tol=1.5
2024-12-08 20:50:24,970 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=58.8 pTM=0.351 ipTM=0.224 tol=2.47
2024-12-08 20:50:36,157 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.8 pTM=0.357 ipTM=0.235 tol=3.67
2024-12-08 20:50:47,347 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=59 pTM=0.36 ipTM=0.237 tol=1.95
2024-12-08 20:50:58,539 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=59.3 pTM=0.365 ipTM=0.229 tol=2.14
2024-12-08 20:51:09,733 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=59.1 pTM=0.367 ipTM=0.243 tol=2.04
2024-12-08 20:51:20,928 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=59.1 pTM=0.362 ipTM=0.226 tol=1.8
2024-12-08 20:51:32,127 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.9 pTM=0.36 ipTM=0.22 tol=2.74
2024-12-08 20:51:32,128 alphafold2_multimer_v3_model_1_seed_000 took 484.7s (30 recycles)
2024-12-08 20:51:43,671 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=58.6 pTM=0.376 ipTM=0.154
2024-12-08 20:51:54,885 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=61 pTM=0.429 ipTM=0.221 tol=33.1
2024-12-08 20:52:06,106 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=62.5 pTM=0.473 ipTM=0.228 tol=22.4
2024-12-08 20:52:17,331 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63.4 pTM=0.479 ipTM=0.263 tol=7.95
2024-12-08 20:52:28,552 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=63.1 pTM=0.474 ipTM=0.21 tol=3.76
2024-12-08 20:52:39,776 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=63.2 pTM=0.471 ipTM=0.207 tol=4.7
2024-12-08 20:52:51,006 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=63.4 pTM=0.47 ipTM=0.25 tol=3.52
2024-12-08 20:53:02,234 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=63.4 pTM=0.468 ipTM=0.253 tol=3.42
2024-12-08 20:53:13,464 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=63.6 pTM=0.472 ipTM=0.26 tol=1.52
2024-12-08 20:53:24,698 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=63.7 pTM=0.472 ipTM=0.26 tol=2.29
2024-12-08 20:53:35,921 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=63.6 pTM=0.472 ipTM=0.255 tol=2.07
2024-12-08 20:53:47,155 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=63.3 pTM=0.47 ipTM=0.27 tol=2.04
2024-12-08 20:53:58,385 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=63.5 pTM=0.471 ipTM=0.266 tol=2.72
2024-12-08 20:54:09,606 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=63.4 pTM=0.472 ipTM=0.26 tol=1.57
2024-12-08 20:54:20,829 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=63.5 pTM=0.472 ipTM=0.254 tol=1.55
2024-12-08 20:54:32,056 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=63.8 pTM=0.474 ipTM=0.263 tol=1.97
2024-12-08 20:54:43,285 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=63.5 pTM=0.471 ipTM=0.257 tol=1.6
2024-12-08 20:54:54,515 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=63.7 pTM=0.47 ipTM=0.262 tol=1.71
2024-12-08 20:55:05,739 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.5 pTM=0.472 ipTM=0.273 tol=2.01
2024-12-08 20:55:16,959 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.3 pTM=0.472 ipTM=0.25 tol=1.47
2024-12-08 20:55:28,177 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63.5 pTM=0.471 ipTM=0.275 tol=1.41
2024-12-08 20:55:39,400 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63.2 pTM=0.47 ipTM=0.247 tol=1.38
2024-12-08 20:55:50,625 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=63.5 pTM=0.471 ipTM=0.267 tol=1.14
2024-12-08 20:56:01,849 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.7 pTM=0.473 ipTM=0.259 tol=1.57
2024-12-08 20:56:13,071 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63.5 pTM=0.473 ipTM=0.273 tol=2.67
2024-12-08 20:56:24,295 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=63.3 pTM=0.472 ipTM=0.249 tol=1.94
2024-12-08 20:56:35,518 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=63.3 pTM=0.47 ipTM=0.262 tol=1.36
2024-12-08 20:56:46,745 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=63.5 pTM=0.476 ipTM=0.241 tol=1.54
2024-12-08 20:56:57,967 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.5 pTM=0.473 ipTM=0.28 tol=1.4
2024-12-08 20:57:09,190 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=63.5 pTM=0.475 ipTM=0.238 tol=1.56
2024-12-08 20:57:20,412 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.4 pTM=0.474 ipTM=0.271 tol=2.04
2024-12-08 20:57:20,413 alphafold2_multimer_v3_model_2_seed_000 took 347.9s (30 recycles)
2024-12-08 20:57:32,005 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=59.5 pTM=0.348 ipTM=0.126
2024-12-08 20:57:43,221 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=62.1 pTM=0.468 ipTM=0.154 tol=15.3
2024-12-08 20:57:54,443 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=62.3 pTM=0.486 ipTM=0.171 tol=6.55
2024-12-08 20:58:05,668 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=62.6 pTM=0.484 ipTM=0.173 tol=5.18
2024-12-08 20:58:16,903 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=62.5 pTM=0.481 ipTM=0.165 tol=2.96
2024-12-08 20:58:28,126 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=62.2 pTM=0.48 ipTM=0.175 tol=5.05
2024-12-08 20:58:39,344 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=62.3 pTM=0.48 ipTM=0.172 tol=3.51
2024-12-08 20:58:50,574 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=62.2 pTM=0.48 ipTM=0.174 tol=2.53
2024-12-08 20:59:01,800 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=62.3 pTM=0.483 ipTM=0.176 tol=3.88
2024-12-08 20:59:13,027 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=62.4 pTM=0.483 ipTM=0.175 tol=2.88
2024-12-08 20:59:24,249 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=62.4 pTM=0.485 ipTM=0.178 tol=2.33
2024-12-08 20:59:35,475 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=62.2 pTM=0.482 ipTM=0.177 tol=2.65
2024-12-08 20:59:46,697 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=62.3 pTM=0.484 ipTM=0.176 tol=2.8
2024-12-08 20:59:57,925 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=62.2 pTM=0.482 ipTM=0.176 tol=2.85
2024-12-08 21:00:09,149 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=62.1 pTM=0.484 ipTM=0.176 tol=4.04
2024-12-08 21:00:20,376 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.2 pTM=0.485 ipTM=0.179 tol=3.06
2024-12-08 21:00:31,601 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=62.3 pTM=0.483 ipTM=0.178 tol=3.24
2024-12-08 21:00:42,820 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=62.1 pTM=0.482 ipTM=0.178 tol=2.96
2024-12-08 21:00:54,040 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=62.3 pTM=0.484 ipTM=0.177 tol=3.7
2024-12-08 21:01:05,261 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62 pTM=0.484 ipTM=0.181 tol=2.36
2024-12-08 21:01:16,485 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.2 pTM=0.483 ipTM=0.177 tol=1.64
2024-12-08 21:01:27,705 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=62.2 pTM=0.483 ipTM=0.181 tol=1.78
2024-12-08 21:01:38,923 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=62.3 pTM=0.484 ipTM=0.179 tol=1.38
2024-12-08 21:01:50,139 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=62.1 pTM=0.484 ipTM=0.179 tol=1.67
2024-12-08 21:02:01,360 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=62.4 pTM=0.485 ipTM=0.177 tol=2.18
2024-12-08 21:02:12,581 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=62.1 pTM=0.483 ipTM=0.179 tol=2.23
2024-12-08 21:02:23,805 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=61.8 pTM=0.481 ipTM=0.178 tol=1.6
2024-12-08 21:02:35,027 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=62.1 pTM=0.484 ipTM=0.178 tol=1.83
2024-12-08 21:02:46,250 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62 pTM=0.482 ipTM=0.177 tol=2.25
2024-12-08 21:02:57,473 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=62.2 pTM=0.484 ipTM=0.178 tol=2.53
2024-12-08 21:03:08,697 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=62 pTM=0.481 ipTM=0.177 tol=1.43
2024-12-08 21:03:08,698 alphafold2_multimer_v3_model_3_seed_000 took 347.9s (30 recycles)
2024-12-08 21:03:20,269 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=54.9 pTM=0.367 ipTM=0.146
2024-12-08 21:03:31,479 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61.4 pTM=0.46 ipTM=0.185 tol=33.5
2024-12-08 21:03:42,684 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=61.6 pTM=0.489 ipTM=0.178 tol=7.62
2024-12-08 21:03:53,905 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=61.9 pTM=0.488 ipTM=0.183 tol=4.73
2024-12-08 21:04:05,127 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=61.8 pTM=0.488 ipTM=0.188 tol=11.2
2024-12-08 21:04:16,345 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=61.8 pTM=0.487 ipTM=0.177 tol=5.99
2024-12-08 21:04:27,568 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=61.8 pTM=0.485 ipTM=0.175 tol=3.7
2024-12-08 21:04:38,788 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=61.8 pTM=0.485 ipTM=0.174 tol=2.84
2024-12-08 21:04:50,012 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=62 pTM=0.487 ipTM=0.189 tol=1.96
2024-12-08 21:05:01,231 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=62.1 pTM=0.486 ipTM=0.18 tol=2.37
2024-12-08 21:05:12,451 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=62 pTM=0.486 ipTM=0.173 tol=1.43
2024-12-08 21:05:23,664 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=61.8 pTM=0.482 ipTM=0.175 tol=1.65
2024-12-08 21:05:34,883 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=62.1 pTM=0.487 ipTM=0.191 tol=1.84
2024-12-08 21:05:46,095 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=61.9 pTM=0.485 ipTM=0.177 tol=1.39
2024-12-08 21:05:57,308 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=61.9 pTM=0.488 ipTM=0.18 tol=1.74
2024-12-08 21:06:08,526 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=61.9 pTM=0.487 ipTM=0.177 tol=1.85
2024-12-08 21:06:19,738 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=62 pTM=0.487 ipTM=0.184 tol=1.74
2024-12-08 21:06:30,952 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=62 pTM=0.485 ipTM=0.198 tol=1.13
2024-12-08 21:06:42,157 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=62.1 pTM=0.487 ipTM=0.183 tol=1.08
2024-12-08 21:06:53,368 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=62 pTM=0.488 ipTM=0.178 tol=1.64
2024-12-08 21:07:04,570 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=62.1 pTM=0.488 ipTM=0.18 tol=1.17
2024-12-08 21:07:15,781 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=62 pTM=0.487 ipTM=0.187 tol=2.22
2024-12-08 21:07:26,984 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=62.2 pTM=0.488 ipTM=0.179 tol=1.99
2024-12-08 21:07:38,194 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=62 pTM=0.487 ipTM=0.174 tol=1.57
2024-12-08 21:07:49,392 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=62.2 pTM=0.49 ipTM=0.177 tol=1.83
2024-12-08 21:08:00,599 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=62 pTM=0.486 ipTM=0.175 tol=1.82
2024-12-08 21:08:11,801 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=61.9 pTM=0.485 ipTM=0.177 tol=2
2024-12-08 21:08:23,007 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=62.2 pTM=0.488 ipTM=0.178 tol=1.72
2024-12-08 21:08:34,220 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=62 pTM=0.488 ipTM=0.188 tol=1.62
2024-12-08 21:08:45,435 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=62.2 pTM=0.49 ipTM=0.175 tol=2.01
2024-12-08 21:08:56,645 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=61.9 pTM=0.49 ipTM=0.179 tol=1.4
2024-12-08 21:08:56,645 alphafold2_multimer_v3_model_4_seed_000 took 347.6s (30 recycles)
2024-12-08 21:09:08,232 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=59.9 pTM=0.353 ipTM=0.113
2024-12-08 21:09:19,458 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=55.7 pTM=0.361 ipTM=0.122 tol=32.9
2024-12-08 21:09:30,702 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.6 pTM=0.446 ipTM=0.16 tol=39.3
2024-12-08 21:09:41,943 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=61.9 pTM=0.473 ipTM=0.176 tol=6.51
2024-12-08 21:09:53,183 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.7 pTM=0.477 ipTM=0.179 tol=4.13
2024-12-08 21:10:04,424 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61.8 pTM=0.479 ipTM=0.184 tol=5.06
2024-12-08 21:10:15,656 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=61.7 pTM=0.476 ipTM=0.182 tol=2.18
2024-12-08 21:10:26,894 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=61.8 pTM=0.48 ipTM=0.193 tol=1.9
2024-12-08 21:10:38,133 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62 pTM=0.48 ipTM=0.19 tol=1.69
2024-12-08 21:10:49,363 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.3 pTM=0.481 ipTM=0.19 tol=3.36
2024-12-08 21:11:00,595 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.1 pTM=0.479 ipTM=0.18 tol=3.16
2024-12-08 21:11:11,828 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.2 pTM=0.479 ipTM=0.187 tol=2.3
2024-12-08 21:11:23,065 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.2 pTM=0.48 ipTM=0.173 tol=1.67
2024-12-08 21:11:34,295 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.3 pTM=0.482 ipTM=0.178 tol=2.97
2024-12-08 21:11:45,525 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.1 pTM=0.479 ipTM=0.173 tol=1.8
2024-12-08 21:11:56,760 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.4 pTM=0.481 ipTM=0.19 tol=3.02
2024-12-08 21:12:07,999 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.2 pTM=0.479 ipTM=0.205 tol=1.97
2024-12-08 21:12:19,231 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.3 pTM=0.48 ipTM=0.194 tol=3.22
2024-12-08 21:12:30,463 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.2 pTM=0.482 ipTM=0.184 tol=5.34
2024-12-08 21:12:41,693 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.2 pTM=0.483 ipTM=0.199 tol=3.84
2024-12-08 21:12:52,925 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.3 pTM=0.481 ipTM=0.182 tol=3.41
2024-12-08 21:13:04,163 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.3 pTM=0.483 ipTM=0.212 tol=3.09
2024-12-08 21:13:15,398 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.2 pTM=0.48 ipTM=0.187 tol=3.82
2024-12-08 21:13:26,632 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.6 pTM=0.483 ipTM=0.211 tol=4.27
2024-12-08 21:13:37,875 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.9 pTM=0.481 ipTM=0.189 tol=6.03
2024-12-08 21:13:49,106 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.4 pTM=0.482 ipTM=0.193 tol=2.5
2024-12-08 21:14:00,340 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.2 pTM=0.479 ipTM=0.186 tol=2.94
2024-12-08 21:14:11,577 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.5 pTM=0.485 ipTM=0.211 tol=2.93
2024-12-08 21:14:22,809 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.3 pTM=0.479 ipTM=0.188 tol=1.33
2024-12-08 21:14:34,043 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.2 pTM=0.487 ipTM=0.187 tol=3.16
2024-12-08 21:14:45,277 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.2 pTM=0.481 ipTM=0.181 tol=2.01
2024-12-08 21:14:45,277 alphafold2_multimer_v3_model_5_seed_000 took 348.3s (30 recycles)
2024-12-08 21:14:45,623 reranking models by 'multimer' metric
2024-12-08 21:14:48,654 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-08 21:15:41,502 Relaxation took 55.9s
2024-12-08 21:15:41,503 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.4 pTM=0.474 ipTM=0.271
2024-12-08 21:16:26,539 Relaxation took 45.0s
2024-12-08 21:16:26,539 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.9 pTM=0.36 ipTM=0.22
2024-12-08 21:17:16,534 Relaxation took 50.0s
2024-12-08 21:17:16,534 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=61.9 pTM=0.49 ipTM=0.179
2024-12-08 21:18:31,056 Relaxation took 74.5s
2024-12-08 21:18:31,057 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.2 pTM=0.481 ipTM=0.181
2024-12-08 21:19:42,809 Relaxation took 71.8s
2024-12-08 21:19:42,809 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=62 pTM=0.481 ipTM=0.177
2024-12-08 21:19:44,144 Done