2024-12-09 03:14:24,425 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 03:14:24,728 Running on GPU
2024-12-09 03:14:28,455 Found 6 citations for tools or databases
2024-12-09 03:14:28,455 Query 1/1: TRIM41_HIST1H2BA (length 757)
2024-12-09 03:14:28,919 Sleeping for 5s. Reason: PENDING
2024-12-09 03:14:34,168 Sleeping for 10s. Reason: RUNNING
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2024-12-09 03:15:15,466 Sleeping for 9s. Reason: RUNNING
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2024-12-09 03:15:32,978 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:15:41,240 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:15:49,495 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:15:54,748 Sleeping for 10s. Reason: RUNNING
2024-12-09 03:16:05,007 Sleeping for 6s. Reason: RUNNING
2024-12-09 03:16:11,272 Sleeping for 10s. Reason: RUNNING
2024-12-09 03:16:21,540 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:16:26,794 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:16:32,054 Sleeping for 10s. Reason: RUNNING
2024-12-09 03:16:42,312 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:16:50,566 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:16:55,828 Sleeping for 6s. Reason: RUNNING
2024-12-09 03:17:02,082 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:17:07,336 Sleeping for 10s. Reason: RUNNING
2024-12-09 03:17:17,594 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:17:22,846 Sleeping for 9s. Reason: RUNNING
2024-12-09 03:17:32,106 Sleeping for 9s. Reason: RUNNING
2024-12-09 03:17:41,368 Sleeping for 7s. Reason: RUNNING
2024-12-09 03:17:48,624 Sleeping for 9s. Reason: RUNNING
2024-12-09 03:18:00,431 Sleeping for 10s. Reason: PENDING
2024-12-09 03:18:10,687 Sleeping for 6s. Reason: RUNNING
2024-12-09 03:18:16,942 Sleeping for 7s. Reason: RUNNING
2024-12-09 03:18:24,350 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:18:32,607 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:18:40,864 Sleeping for 10s. Reason: RUNNING
2024-12-09 03:18:51,127 Sleeping for 6s. Reason: RUNNING
2024-12-09 03:18:57,384 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:19:02,651 Sleeping for 6s. Reason: RUNNING
2024-12-09 03:19:08,906 Sleeping for 7s. Reason: RUNNING
2024-12-09 03:19:16,168 Sleeping for 5s. Reason: RUNNING
2024-12-09 03:19:21,425 Sleeping for 7s. Reason: RUNNING
2024-12-09 03:19:28,678 Sleeping for 8s. Reason: RUNNING
2024-12-09 03:19:40,359 Setting max_seq=508, max_extra_seq=2048
2024-12-09 03:22:36,248 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=57.4 pTM=0.319 ipTM=0.159
2024-12-09 03:22:47,750 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=57.3 pTM=0.325 ipTM=0.18 tol=16
2024-12-09 03:22:59,261 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=57.7 pTM=0.324 ipTM=0.172 tol=5.41
2024-12-09 03:23:10,800 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=57.3 pTM=0.32 ipTM=0.16 tol=4.54
2024-12-09 03:23:22,384 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=57.5 pTM=0.323 ipTM=0.144 tol=9.85
2024-12-09 03:23:33,974 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=57.7 pTM=0.322 ipTM=0.185 tol=4.94
2024-12-09 03:23:45,594 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=57.8 pTM=0.32 ipTM=0.177 tol=6.25
2024-12-09 03:23:57,210 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=58.9 pTM=0.323 ipTM=0.159 tol=5.23
2024-12-09 03:24:08,840 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=58.5 pTM=0.323 ipTM=0.179 tol=3.49
2024-12-09 03:24:20,471 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=58.4 pTM=0.323 ipTM=0.145 tol=3.46
2024-12-09 03:24:32,125 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=58.1 pTM=0.325 ipTM=0.144 tol=4.98
2024-12-09 03:24:43,779 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=58.3 pTM=0.324 ipTM=0.144 tol=3.9
2024-12-09 03:24:55,450 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=58.4 pTM=0.325 ipTM=0.141 tol=2.28
2024-12-09 03:25:07,122 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=58.9 pTM=0.323 ipTM=0.159 tol=3.37
2024-12-09 03:25:18,805 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=58.1 pTM=0.323 ipTM=0.157 tol=3.55
2024-12-09 03:25:30,479 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=58.3 pTM=0.324 ipTM=0.153 tol=2.55
2024-12-09 03:25:42,146 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=58.3 pTM=0.324 ipTM=0.166 tol=3.61
2024-12-09 03:25:53,834 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=58.7 pTM=0.324 ipTM=0.143 tol=3.53
2024-12-09 03:26:05,519 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=58.7 pTM=0.327 ipTM=0.164 tol=2.6
2024-12-09 03:26:17,198 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=58.6 pTM=0.324 ipTM=0.166 tol=1.84
2024-12-09 03:26:28,881 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=58.2 pTM=0.326 ipTM=0.155 tol=2.73
2024-12-09 03:26:40,560 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=58.3 pTM=0.326 ipTM=0.136 tol=2.89
2024-12-09 03:26:52,236 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=58.3 pTM=0.325 ipTM=0.136 tol=3.34
2024-12-09 03:27:03,913 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=58.5 pTM=0.324 ipTM=0.146 tol=2.54
2024-12-09 03:27:15,592 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=57.9 pTM=0.326 ipTM=0.151 tol=3.11
2024-12-09 03:27:27,276 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=58.2 pTM=0.327 ipTM=0.143 tol=4.07
2024-12-09 03:27:38,956 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=57.9 pTM=0.325 ipTM=0.141 tol=3.47
2024-12-09 03:27:50,643 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=58 pTM=0.325 ipTM=0.138 tol=2.68
2024-12-09 03:28:02,328 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=57.9 pTM=0.324 ipTM=0.138 tol=2.73
2024-12-09 03:28:13,995 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=58.2 pTM=0.326 ipTM=0.137 tol=2.43
2024-12-09 03:28:25,677 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=58.4 pTM=0.325 ipTM=0.155 tol=2.88
2024-12-09 03:28:25,678 alphafold2_multimer_v3_model_1_seed_000 took 520.4s (30 recycles)
2024-12-09 03:28:37,715 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=55.9 pTM=0.337 ipTM=0.149
2024-12-09 03:28:49,400 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.3 pTM=0.329 ipTM=0.172 tol=13.8
2024-12-09 03:29:01,092 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.7 pTM=0.32 ipTM=0.152 tol=9.69
2024-12-09 03:29:12,782 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=58.5 pTM=0.329 ipTM=0.154 tol=4.88
2024-12-09 03:29:24,439 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=59.6 pTM=0.353 ipTM=0.151 tol=4.04
2024-12-09 03:29:36,119 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=60.4 pTM=0.386 ipTM=0.145 tol=2.96
2024-12-09 03:29:47,793 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=60.9 pTM=0.39 ipTM=0.148 tol=1.59
2024-12-09 03:29:59,469 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=61.3 pTM=0.399 ipTM=0.152 tol=1.88
2024-12-09 03:30:11,163 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=61.4 pTM=0.401 ipTM=0.15 tol=1.51
2024-12-09 03:30:22,850 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.5 pTM=0.405 ipTM=0.151 tol=1.74
2024-12-09 03:30:34,541 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=61.5 pTM=0.406 ipTM=0.151 tol=1.86
2024-12-09 03:30:46,218 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=61.7 pTM=0.407 ipTM=0.152 tol=2.33
2024-12-09 03:30:57,905 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=61.7 pTM=0.405 ipTM=0.148 tol=2.33
2024-12-09 03:31:09,576 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=61.6 pTM=0.404 ipTM=0.152 tol=1.99
2024-12-09 03:31:21,259 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61.6 pTM=0.406 ipTM=0.151 tol=1.72
2024-12-09 03:31:32,936 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=61.8 pTM=0.406 ipTM=0.16 tol=2.25
2024-12-09 03:31:44,613 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=61.4 pTM=0.405 ipTM=0.15 tol=1.87
2024-12-09 03:31:56,280 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=61.7 pTM=0.413 ipTM=0.158 tol=4.16
2024-12-09 03:32:07,948 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61.9 pTM=0.407 ipTM=0.156 tol=3.96
2024-12-09 03:32:19,631 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=61.4 pTM=0.408 ipTM=0.156 tol=2.08
2024-12-09 03:32:31,315 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=61.3 pTM=0.405 ipTM=0.141 tol=2.89
2024-12-09 03:32:43,000 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=61.2 pTM=0.406 ipTM=0.144 tol=1.89
2024-12-09 03:32:54,653 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=61.1 pTM=0.406 ipTM=0.141 tol=2.76
2024-12-09 03:33:06,331 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=61.3 pTM=0.403 ipTM=0.142 tol=3.35
2024-12-09 03:33:17,994 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61.2 pTM=0.406 ipTM=0.143 tol=2.52
2024-12-09 03:33:29,670 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=61.2 pTM=0.408 ipTM=0.142 tol=2.26
2024-12-09 03:33:41,366 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61.2 pTM=0.408 ipTM=0.144 tol=3.64
2024-12-09 03:33:53,049 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=61.2 pTM=0.406 ipTM=0.14 tol=3.79
2024-12-09 03:34:04,733 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=61.6 pTM=0.41 ipTM=0.152 tol=3.26
2024-12-09 03:34:16,415 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=61.1 pTM=0.405 ipTM=0.142 tol=2.32
2024-12-09 03:34:28,082 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=61.2 pTM=0.408 ipTM=0.153 tol=3.06
2024-12-09 03:34:28,083 alphafold2_multimer_v3_model_2_seed_000 took 362.0s (30 recycles)
2024-12-09 03:34:40,136 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=53.5 pTM=0.333 ipTM=0.183
2024-12-09 03:34:51,853 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55.4 pTM=0.329 ipTM=0.17 tol=9.87
2024-12-09 03:35:03,569 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=55.4 pTM=0.327 ipTM=0.19 tol=6.93
2024-12-09 03:35:15,285 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=55.3 pTM=0.331 ipTM=0.167 tol=6.24
2024-12-09 03:35:26,999 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=54.9 pTM=0.332 ipTM=0.18 tol=4.68
2024-12-09 03:35:38,714 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=54.8 pTM=0.332 ipTM=0.163 tol=3.97
2024-12-09 03:35:50,409 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=54.7 pTM=0.331 ipTM=0.166 tol=2.44
2024-12-09 03:36:02,118 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=55.2 pTM=0.333 ipTM=0.165 tol=2.64
2024-12-09 03:36:13,837 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=55.1 pTM=0.333 ipTM=0.166 tol=2.04
2024-12-09 03:36:25,545 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=55.1 pTM=0.337 ipTM=0.17 tol=1.98
2024-12-09 03:36:37,257 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=55.2 pTM=0.335 ipTM=0.162 tol=1.71
2024-12-09 03:36:48,968 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.4 pTM=0.333 ipTM=0.165 tol=1.97
2024-12-09 03:37:00,671 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=55.2 pTM=0.337 ipTM=0.171 tol=2.02
2024-12-09 03:37:12,368 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=55.2 pTM=0.335 ipTM=0.169 tol=1.79
2024-12-09 03:37:24,065 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=54.8 pTM=0.336 ipTM=0.17 tol=1.73
2024-12-09 03:37:35,764 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55 pTM=0.336 ipTM=0.171 tol=2.58
2024-12-09 03:37:47,463 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.1 pTM=0.334 ipTM=0.169 tol=2.62
2024-12-09 03:37:59,157 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.1 pTM=0.335 ipTM=0.173 tol=2.42
2024-12-09 03:38:10,852 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=54.9 pTM=0.333 ipTM=0.17 tol=2.85
2024-12-09 03:38:22,531 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=54.7 pTM=0.336 ipTM=0.172 tol=2.97
2024-12-09 03:38:34,225 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=54.8 pTM=0.335 ipTM=0.168 tol=2.35
2024-12-09 03:38:45,921 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=54.8 pTM=0.336 ipTM=0.172 tol=2.43
2024-12-09 03:38:57,608 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=53.8 pTM=0.335 ipTM=0.165 tol=11.8
2024-12-09 03:39:09,295 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=54.7 pTM=0.331 ipTM=0.177 tol=10.7
2024-12-09 03:39:20,982 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.4 pTM=0.331 ipTM=0.164 tol=4.5
2024-12-09 03:39:32,679 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.2 pTM=0.332 ipTM=0.165 tol=3.02
2024-12-09 03:39:44,364 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.4 pTM=0.336 ipTM=0.167 tol=3.41
2024-12-09 03:39:56,058 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55 pTM=0.333 ipTM=0.166 tol=2.99
2024-12-09 03:40:07,739 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55.3 pTM=0.335 ipTM=0.169 tol=2.82
2024-12-09 03:40:19,416 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.4 pTM=0.336 ipTM=0.161 tol=2
2024-12-09 03:40:31,102 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.4 pTM=0.334 ipTM=0.165 tol=1.11
2024-12-09 03:40:31,103 alphafold2_multimer_v3_model_3_seed_000 took 362.6s (30 recycles)
2024-12-09 03:40:43,177 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=52.7 pTM=0.329 ipTM=0.191
2024-12-09 03:40:54,862 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=54.2 pTM=0.328 ipTM=0.19 tol=11.4
2024-12-09 03:41:06,564 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=54.8 pTM=0.335 ipTM=0.208 tol=5.56
2024-12-09 03:41:18,252 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=54.5 pTM=0.334 ipTM=0.208 tol=5.09
2024-12-09 03:41:29,961 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55 pTM=0.334 ipTM=0.224 tol=5.52
2024-12-09 03:41:41,657 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.2 pTM=0.336 ipTM=0.233 tol=3.66
2024-12-09 03:41:53,366 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55.8 pTM=0.338 ipTM=0.239 tol=4.06
2024-12-09 03:42:05,064 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=56 pTM=0.34 ipTM=0.245 tol=6.96
2024-12-09 03:42:16,765 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=55.6 pTM=0.338 ipTM=0.244 tol=4.36
2024-12-09 03:42:28,472 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55.6 pTM=0.344 ipTM=0.235 tol=4.25
2024-12-09 03:42:40,192 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=55.8 pTM=0.341 ipTM=0.235 tol=2.98
2024-12-09 03:42:51,911 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.7 pTM=0.342 ipTM=0.236 tol=1.71
2024-12-09 03:43:03,639 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=56.2 pTM=0.344 ipTM=0.249 tol=3.21
2024-12-09 03:43:15,355 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=56 pTM=0.344 ipTM=0.232 tol=4.66
2024-12-09 03:43:27,058 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=56.2 pTM=0.345 ipTM=0.247 tol=4.22
2024-12-09 03:43:38,786 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=56.2 pTM=0.347 ipTM=0.237 tol=6.75
2024-12-09 03:43:50,505 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=56.1 pTM=0.347 ipTM=0.244 tol=5.38
2024-12-09 03:44:02,218 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=56.2 pTM=0.347 ipTM=0.241 tol=6.4
2024-12-09 03:44:13,938 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=56.2 pTM=0.345 ipTM=0.248 tol=5.18
2024-12-09 03:44:25,632 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.7 pTM=0.346 ipTM=0.23 tol=3.69
2024-12-09 03:44:37,324 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.9 pTM=0.347 ipTM=0.233 tol=3.02
2024-12-09 03:44:49,019 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.8 pTM=0.347 ipTM=0.237 tol=3.7
2024-12-09 03:45:00,733 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.4 pTM=0.344 ipTM=0.235 tol=5.09
2024-12-09 03:45:12,435 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.8 pTM=0.344 ipTM=0.232 tol=4.29
2024-12-09 03:45:24,134 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55.6 pTM=0.343 ipTM=0.232 tol=2.35
2024-12-09 03:45:35,833 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.6 pTM=0.346 ipTM=0.249 tol=3.39
2024-12-09 03:45:47,540 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=56.2 pTM=0.346 ipTM=0.244 tol=7.91
2024-12-09 03:45:59,244 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.9 pTM=0.342 ipTM=0.245 tol=8.17
2024-12-09 03:46:10,942 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=56 pTM=0.343 ipTM=0.243 tol=3.5
2024-12-09 03:46:22,649 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.6 pTM=0.342 ipTM=0.232 tol=3.99
2024-12-09 03:46:34,350 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55.8 pTM=0.341 ipTM=0.238 tol=2.5
2024-12-09 03:46:34,351 alphafold2_multimer_v3_model_4_seed_000 took 362.9s (30 recycles)
2024-12-09 03:46:46,420 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=52.8 pTM=0.336 ipTM=0.192
2024-12-09 03:46:58,138 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=53.7 pTM=0.334 ipTM=0.169 tol=10.6
2024-12-09 03:47:09,844 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=54.4 pTM=0.332 ipTM=0.158 tol=4.73
2024-12-09 03:47:21,556 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=54.4 pTM=0.33 ipTM=0.173 tol=4.47
2024-12-09 03:47:33,241 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=54.2 pTM=0.333 ipTM=0.184 tol=4.43
2024-12-09 03:47:44,937 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=54.6 pTM=0.332 ipTM=0.247 tol=7.05
2024-12-09 03:47:56,642 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=54.3 pTM=0.333 ipTM=0.218 tol=4.94
2024-12-09 03:48:08,352 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=54.5 pTM=0.329 ipTM=0.168 tol=3.24
2024-12-09 03:48:20,046 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=54.6 pTM=0.331 ipTM=0.168 tol=2.35
2024-12-09 03:48:31,735 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=54.7 pTM=0.333 ipTM=0.163 tol=1.83
2024-12-09 03:48:43,431 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=54.6 pTM=0.33 ipTM=0.155 tol=2.48
2024-12-09 03:48:55,125 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=54.9 pTM=0.33 ipTM=0.161 tol=1.82
2024-12-09 03:49:06,815 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=54.7 pTM=0.333 ipTM=0.154 tol=3.2
2024-12-09 03:49:18,513 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=54.6 pTM=0.334 ipTM=0.156 tol=2.22
2024-12-09 03:49:30,231 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=54.4 pTM=0.33 ipTM=0.146 tol=2.2
2024-12-09 03:49:41,925 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=54.9 pTM=0.334 ipTM=0.165 tol=2.06
2024-12-09 03:49:53,635 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=54.5 pTM=0.332 ipTM=0.146 tol=2.31
2024-12-09 03:50:05,333 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.1 pTM=0.336 ipTM=0.165 tol=2.03
2024-12-09 03:50:17,043 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=54.5 pTM=0.335 ipTM=0.146 tol=3.08
2024-12-09 03:50:28,724 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=54.9 pTM=0.337 ipTM=0.165 tol=2.41
2024-12-09 03:50:40,431 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=54.6 pTM=0.332 ipTM=0.152 tol=5.16
2024-12-09 03:50:52,127 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55 pTM=0.342 ipTM=0.169 tol=2.6
2024-12-09 03:51:03,810 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.6 pTM=0.338 ipTM=0.149 tol=2.84
2024-12-09 03:51:15,509 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.5 pTM=0.334 ipTM=0.167 tol=3.15
2024-12-09 03:51:27,224 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.3 pTM=0.333 ipTM=0.147 tol=3.1
2024-12-09 03:51:38,930 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.1 pTM=0.336 ipTM=0.163 tol=1.76
2024-12-09 03:51:50,631 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55 pTM=0.337 ipTM=0.159 tol=1.9
2024-12-09 03:52:02,323 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=54.8 pTM=0.337 ipTM=0.161 tol=2.57
2024-12-09 03:52:14,003 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=54.8 pTM=0.337 ipTM=0.158 tol=2.63
2024-12-09 03:52:25,695 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=54.5 pTM=0.337 ipTM=0.154 tol=2.43
2024-12-09 03:52:37,385 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.3 pTM=0.333 ipTM=0.158 tol=5.98
2024-12-09 03:52:37,386 alphafold2_multimer_v3_model_5_seed_000 took 362.7s (30 recycles)
2024-12-09 03:52:37,753 reranking models by 'multimer' metric
2024-12-09 03:52:40,305 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 03:53:44,198 Relaxation took 66.4s
2024-12-09 03:53:44,198 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.8 pTM=0.341 ipTM=0.238
2024-12-09 03:54:31,164 Relaxation took 47.0s
2024-12-09 03:54:31,164 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=61.2 pTM=0.408 ipTM=0.153
2024-12-09 03:55:21,126 Relaxation took 50.0s
2024-12-09 03:55:21,126 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.4 pTM=0.334 ipTM=0.165
2024-12-09 03:56:00,346 Relaxation took 39.2s
2024-12-09 03:56:00,346 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.3 pTM=0.333 ipTM=0.158
2024-12-09 03:56:22,986 Relaxation took 22.6s
2024-12-09 03:56:22,986 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.4 pTM=0.325 ipTM=0.155
2024-12-09 03:56:24,309 Done