2024-12-09 04:42:08,548 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 04:42:08,913 Running on GPU
2024-12-09 04:42:11,659 Found 6 citations for tools or databases
2024-12-09 04:42:11,659 Query 1/1: TRIM68_CCL16 (length 605)
2024-12-09 04:42:11,940 Sleeping for 5s. Reason: PENDING
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2024-12-09 04:45:00,072 Sleeping for 5s. Reason: PENDING
2024-12-09 04:45:05,328 Sleeping for 9s. Reason: RUNNING
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2024-12-09 04:46:27,906 Sleeping for 5s. Reason: RUNNING
2024-12-09 04:46:37,367 Setting max_seq=508, max_extra_seq=2048
2024-12-09 04:50:17,445 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=76.8 pTM=0.63 ipTM=0.46
2024-12-09 04:50:27,550 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79 pTM=0.651 ipTM=0.556 tol=3.93
2024-12-09 04:50:37,636 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.4 pTM=0.652 ipTM=0.569 tol=2.56
2024-12-09 04:50:47,723 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.6 pTM=0.645 ipTM=0.573 tol=0.932
2024-12-09 04:50:57,803 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80 pTM=0.646 ipTM=0.572 tol=0.578
2024-12-09 04:51:07,881 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.9 pTM=0.643 ipTM=0.572 tol=0.546
2024-12-09 04:51:17,966 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.3 pTM=0.649 ipTM=0.577 tol=0.626
2024-12-09 04:51:28,049 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.4 pTM=0.644 ipTM=0.576 tol=0.39
2024-12-09 04:51:28,050 alphafold2_multimer_v3_model_1_seed_000 took 284.0s (7 recycles)
2024-12-09 04:51:38,448 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.7 pTM=0.592 ipTM=0.499
2024-12-09 04:51:48,534 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.3 pTM=0.626 ipTM=0.502 tol=2.85
2024-12-09 04:51:58,627 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.1 pTM=0.633 ipTM=0.545 tol=1.38
2024-12-09 04:52:08,723 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.1 pTM=0.641 ipTM=0.533 tol=1.87
2024-12-09 04:52:18,826 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.1 pTM=0.648 ipTM=0.535 tol=1.21
2024-12-09 04:52:28,925 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.4 pTM=0.659 ipTM=0.535 tol=1.31
2024-12-09 04:52:39,037 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.6 pTM=0.668 ipTM=0.537 tol=0.636
2024-12-09 04:52:49,146 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.4 pTM=0.657 ipTM=0.532 tol=0.463
2024-12-09 04:52:49,147 alphafold2_multimer_v3_model_2_seed_000 took 80.8s (7 recycles)
2024-12-09 04:52:59,573 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.6 pTM=0.585 ipTM=0.261
2024-12-09 04:53:09,698 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.8 pTM=0.588 ipTM=0.173 tol=11
2024-12-09 04:53:19,817 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.6 pTM=0.591 ipTM=0.187 tol=5.46
2024-12-09 04:53:29,936 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.3 pTM=0.577 ipTM=0.165 tol=7.75
2024-12-09 04:53:40,051 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.8 pTM=0.591 ipTM=0.198 tol=1.52
2024-12-09 04:53:50,161 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.7 pTM=0.589 ipTM=0.207 tol=4.05
2024-12-09 04:54:00,280 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=75.6 pTM=0.603 ipTM=0.255 tol=1.54
2024-12-09 04:54:10,395 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=75.8 pTM=0.598 ipTM=0.265 tol=1.47
2024-12-09 04:54:20,506 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.4 pTM=0.607 ipTM=0.317 tol=1.17
2024-12-09 04:54:30,615 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=76.4 pTM=0.608 ipTM=0.316 tol=0.959
2024-12-09 04:54:40,718 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.6 pTM=0.607 ipTM=0.319 tol=0.759
2024-12-09 04:54:50,827 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=76.5 pTM=0.61 ipTM=0.334 tol=0.634
2024-12-09 04:55:00,932 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.7 pTM=0.606 ipTM=0.32 tol=0.977
2024-12-09 04:55:11,040 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=76.2 pTM=0.607 ipTM=0.309 tol=0.636
2024-12-09 04:55:21,142 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=76.3 pTM=0.604 ipTM=0.306 tol=0.67
2024-12-09 04:55:31,251 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=76.4 pTM=0.606 ipTM=0.333 tol=0.68
2024-12-09 04:55:41,352 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=76.4 pTM=0.604 ipTM=0.309 tol=1.23
2024-12-09 04:55:51,457 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=76.4 pTM=0.604 ipTM=0.338 tol=1.08
2024-12-09 04:56:01,555 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=76.2 pTM=0.6 ipTM=0.319 tol=0.903
2024-12-09 04:56:11,676 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=76.4 pTM=0.607 ipTM=0.324 tol=0.908
2024-12-09 04:56:21,774 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=76.1 pTM=0.6 ipTM=0.305 tol=1.38
2024-12-09 04:56:31,877 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=76.3 pTM=0.602 ipTM=0.31 tol=0.748
2024-12-09 04:56:41,982 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=76.6 pTM=0.603 ipTM=0.323 tol=0.686
2024-12-09 04:56:52,077 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=76.2 pTM=0.6 ipTM=0.287 tol=0.578
2024-12-09 04:57:02,177 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=75.9 pTM=0.597 ipTM=0.301 tol=0.978
2024-12-09 04:57:12,288 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=76.2 pTM=0.603 ipTM=0.326 tol=0.94
2024-12-09 04:57:22,384 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=76.4 pTM=0.602 ipTM=0.32 tol=1.5
2024-12-09 04:57:32,484 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=76.2 pTM=0.604 ipTM=0.323 tol=1.15
2024-12-09 04:57:42,592 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=76.4 pTM=0.604 ipTM=0.325 tol=0.674
2024-12-09 04:57:52,696 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=76.2 pTM=0.604 ipTM=0.34 tol=0.717
2024-12-09 04:58:02,803 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=76.6 pTM=0.606 ipTM=0.315 tol=0.743
2024-12-09 04:58:02,803 alphafold2_multimer_v3_model_3_seed_000 took 313.3s (30 recycles)
2024-12-09 04:58:13,250 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.2 pTM=0.621 ipTM=0.311
2024-12-09 04:58:23,383 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.6 pTM=0.631 ipTM=0.349 tol=4.76
2024-12-09 04:58:33,519 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77 pTM=0.628 ipTM=0.4 tol=5.84
2024-12-09 04:58:43,643 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.9 pTM=0.628 ipTM=0.432 tol=6.49
2024-12-09 04:58:53,770 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.5 pTM=0.631 ipTM=0.453 tol=1.66
2024-12-09 04:59:03,893 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.4 pTM=0.632 ipTM=0.462 tol=1.15
2024-12-09 04:59:14,026 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.8 pTM=0.637 ipTM=0.469 tol=1.82
2024-12-09 04:59:24,154 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.1 pTM=0.638 ipTM=0.488 tol=0.781
2024-12-09 04:59:34,288 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.2 pTM=0.638 ipTM=0.485 tol=2.04
2024-12-09 04:59:44,420 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.4 pTM=0.643 ipTM=0.495 tol=1.23
2024-12-09 04:59:54,544 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.5 pTM=0.644 ipTM=0.502 tol=1.16
2024-12-09 05:00:04,691 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.8 pTM=0.648 ipTM=0.514 tol=0.688
2024-12-09 05:00:14,818 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.6 pTM=0.647 ipTM=0.512 tol=0.852
2024-12-09 05:00:24,968 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.2 pTM=0.651 ipTM=0.528 tol=0.86
2024-12-09 05:00:35,113 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.1 pTM=0.649 ipTM=0.521 tol=1.21
2024-12-09 05:00:45,265 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.6 pTM=0.658 ipTM=0.552 tol=0.778
2024-12-09 05:00:55,407 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.3 pTM=0.653 ipTM=0.542 tol=0.854
2024-12-09 05:01:05,535 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.6 pTM=0.654 ipTM=0.554 tol=0.976
2024-12-09 05:01:15,664 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79 pTM=0.645 ipTM=0.541 tol=0.791
2024-12-09 05:01:25,809 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.8 pTM=0.661 ipTM=0.554 tol=0.889
2024-12-09 05:01:35,950 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.6 pTM=0.654 ipTM=0.545 tol=0.58
2024-12-09 05:01:46,088 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=79.6 pTM=0.656 ipTM=0.545 tol=0.799
2024-12-09 05:01:56,235 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=79.6 pTM=0.655 ipTM=0.539 tol=0.592
2024-12-09 05:02:06,372 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=79.8 pTM=0.656 ipTM=0.542 tol=0.613
2024-12-09 05:02:16,509 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.8 pTM=0.653 ipTM=0.541 tol=0.717
2024-12-09 05:02:26,656 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.2 pTM=0.663 ipTM=0.556 tol=2.25
2024-12-09 05:02:36,797 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.3 pTM=0.664 ipTM=0.57 tol=4.61
2024-12-09 05:02:46,932 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.6 pTM=0.67 ipTM=0.579 tol=2.07
2024-12-09 05:02:57,072 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80.4 pTM=0.663 ipTM=0.582 tol=0.668
2024-12-09 05:03:07,221 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.8 pTM=0.67 ipTM=0.59 tol=0.623
2024-12-09 05:03:17,357 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80.8 pTM=0.669 ipTM=0.589 tol=0.582
2024-12-09 05:03:17,358 alphafold2_multimer_v3_model_4_seed_000 took 314.2s (30 recycles)
2024-12-09 05:03:27,805 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.5 pTM=0.577 ipTM=0.201
2024-12-09 05:03:37,962 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.1 pTM=0.597 ipTM=0.14 tol=14.9
2024-12-09 05:03:48,095 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.1 pTM=0.624 ipTM=0.377 tol=3.33
2024-12-09 05:03:58,226 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.4 pTM=0.622 ipTM=0.329 tol=3.02
2024-12-09 05:04:08,363 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.9 pTM=0.635 ipTM=0.395 tol=1.17
2024-12-09 05:04:18,487 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.5 pTM=0.635 ipTM=0.374 tol=1.51
2024-12-09 05:04:28,614 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.8 pTM=0.641 ipTM=0.422 tol=0.613
2024-12-09 05:04:38,763 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.9 pTM=0.638 ipTM=0.396 tol=1.03
2024-12-09 05:04:48,910 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.8 pTM=0.657 ipTM=0.488 tol=1.24
2024-12-09 05:04:59,053 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.4 pTM=0.648 ipTM=0.447 tol=0.471
2024-12-09 05:04:59,054 alphafold2_multimer_v3_model_5_seed_000 took 101.4s (9 recycles)
2024-12-09 05:04:59,361 reranking models by 'multimer' metric
2024-12-09 05:05:00,429 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 05:05:26,438 Relaxation took 27.1s
2024-12-09 05:05:26,438 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.8 pTM=0.669 ipTM=0.589
2024-12-09 05:05:49,157 Relaxation took 22.7s
2024-12-09 05:05:49,157 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.4 pTM=0.644 ipTM=0.576
2024-12-09 05:06:07,068 Relaxation took 17.9s
2024-12-09 05:06:07,068 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.4 pTM=0.657 ipTM=0.532
2024-12-09 05:06:35,693 Relaxation took 28.6s
2024-12-09 05:06:35,693 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.4 pTM=0.648 ipTM=0.447
2024-12-09 05:06:57,951 Relaxation took 22.3s
2024-12-09 05:06:57,951 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.6 pTM=0.606 ipTM=0.315
2024-12-09 05:06:59,339 Done