2024-12-09 05:04:07,185 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 05:04:07,506 Running on GPU
2024-12-09 05:04:10,934 Found 6 citations for tools or databases
2024-12-09 05:04:10,934 Query 1/1: TRIM68_GNRH1 (length 577)
2024-12-09 05:04:11,229 Sleeping for 6s. Reason: PENDING
2024-12-09 05:04:17,632 Sleeping for 5s. Reason: PENDING
2024-12-09 05:04:22,895 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:04:33,156 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:04:43,415 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:04:51,670 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:04:59,926 Sleeping for 5s. Reason: RUNNING
2024-12-09 05:05:05,180 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:05:11,437 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:05:20,695 Sleeping for 5s. Reason: RUNNING
2024-12-09 05:05:25,948 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:05:36,207 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:05:46,470 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:05:56,727 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:06:06,995 Sleeping for 7s. Reason: RUNNING
2024-12-09 05:06:14,251 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:06:23,504 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:06:32,763 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:06:39,013 Sleeping for 7s. Reason: RUNNING
2024-12-09 05:06:46,273 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:06:55,535 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:07:04,796 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:07:14,879 Sleeping for 9s. Reason: PENDING
2024-12-09 05:07:24,154 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:07:32,413 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:07:38,665 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:07:47,920 Sleeping for 7s. Reason: RUNNING
2024-12-09 05:07:55,178 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:08:01,430 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:08:07,688 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:08:13,952 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:08:22,212 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:08:33,967 Setting max_seq=508, max_extra_seq=2048
2024-12-09 05:11:33,296 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.6 pTM=0.603 ipTM=0.159
2024-12-09 05:11:40,157 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.8 pTM=0.622 ipTM=0.321 tol=7.42
2024-12-09 05:11:47,029 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.9 pTM=0.608 ipTM=0.242 tol=3.14
2024-12-09 05:11:53,905 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.9 pTM=0.613 ipTM=0.208 tol=1.8
2024-12-09 05:12:00,788 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.9 pTM=0.609 ipTM=0.208 tol=2.96
2024-12-09 05:12:07,681 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=73.7 pTM=0.612 ipTM=0.219 tol=2.98
2024-12-09 05:12:14,586 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=73.8 pTM=0.611 ipTM=0.211 tol=1.9
2024-12-09 05:12:21,494 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.6 pTM=0.613 ipTM=0.222 tol=2.2
2024-12-09 05:12:28,402 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=73.8 pTM=0.613 ipTM=0.215 tol=3
2024-12-09 05:12:35,320 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=73.5 pTM=0.616 ipTM=0.215 tol=1.71
2024-12-09 05:12:42,241 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=73.9 pTM=0.619 ipTM=0.229 tol=3.13
2024-12-09 05:12:49,163 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=74.1 pTM=0.625 ipTM=0.256 tol=1.75
2024-12-09 05:12:56,075 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=74.2 pTM=0.624 ipTM=0.267 tol=1.87
2024-12-09 05:13:02,998 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74.2 pTM=0.625 ipTM=0.272 tol=1.4
2024-12-09 05:13:09,924 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=74.4 pTM=0.625 ipTM=0.271 tol=0.747
2024-12-09 05:13:16,858 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=74.3 pTM=0.626 ipTM=0.278 tol=1.09
2024-12-09 05:13:23,795 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=74.6 pTM=0.624 ipTM=0.275 tol=1.42
2024-12-09 05:13:30,726 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=74.6 pTM=0.625 ipTM=0.278 tol=1.51
2024-12-09 05:13:37,657 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=74.4 pTM=0.622 ipTM=0.272 tol=0.442
2024-12-09 05:13:37,658 alphafold2_multimer_v3_model_1_seed_000 took 298.4s (18 recycles)
2024-12-09 05:13:44,814 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.1 pTM=0.606 ipTM=0.218
2024-12-09 05:13:51,749 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74 pTM=0.618 ipTM=0.206 tol=4.54
2024-12-09 05:13:58,687 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.8 pTM=0.613 ipTM=0.215 tol=1.99
2024-12-09 05:14:05,619 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.9 pTM=0.614 ipTM=0.21 tol=2.86
2024-12-09 05:14:12,560 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74 pTM=0.614 ipTM=0.22 tol=3.61
2024-12-09 05:14:19,493 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74.1 pTM=0.618 ipTM=0.235 tol=1.8
2024-12-09 05:14:26,427 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.4 pTM=0.62 ipTM=0.237 tol=3.33
2024-12-09 05:14:33,364 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.9 pTM=0.625 ipTM=0.255 tol=2.28
2024-12-09 05:14:40,302 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.4 pTM=0.626 ipTM=0.26 tol=1.89
2024-12-09 05:14:47,236 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=75.4 pTM=0.627 ipTM=0.269 tol=1.53
2024-12-09 05:14:54,178 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=75.6 pTM=0.626 ipTM=0.276 tol=1.58
2024-12-09 05:15:01,104 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=75.6 pTM=0.628 ipTM=0.281 tol=0.491
2024-12-09 05:15:01,104 alphafold2_multimer_v3_model_2_seed_000 took 83.2s (11 recycles)
2024-12-09 05:15:08,264 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.1 pTM=0.606 ipTM=0.177
2024-12-09 05:15:15,207 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.1 pTM=0.604 ipTM=0.18 tol=7.32
2024-12-09 05:15:22,140 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=74.3 pTM=0.608 ipTM=0.228 tol=9.58
2024-12-09 05:15:29,081 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.6 pTM=0.609 ipTM=0.257 tol=2.56
2024-12-09 05:15:36,025 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74 pTM=0.61 ipTM=0.26 tol=4.05
2024-12-09 05:15:42,964 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.1 pTM=0.612 ipTM=0.288 tol=1.8
2024-12-09 05:15:49,915 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.4 pTM=0.619 ipTM=0.287 tol=2.43
2024-12-09 05:15:56,860 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=74.5 pTM=0.614 ipTM=0.302 tol=4.03
2024-12-09 05:16:03,801 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=74.5 pTM=0.614 ipTM=0.297 tol=1.13
2024-12-09 05:16:10,747 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=74.2 pTM=0.611 ipTM=0.29 tol=2.08
2024-12-09 05:16:17,688 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=74.5 pTM=0.615 ipTM=0.315 tol=2.3
2024-12-09 05:16:24,634 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=74.4 pTM=0.612 ipTM=0.301 tol=1.04
2024-12-09 05:16:31,572 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.9 pTM=0.606 ipTM=0.287 tol=2.72
2024-12-09 05:16:38,517 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.8 pTM=0.609 ipTM=0.296 tol=1.73
2024-12-09 05:16:45,447 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=74.1 pTM=0.611 ipTM=0.302 tol=2.56
2024-12-09 05:16:52,373 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.8 pTM=0.61 ipTM=0.295 tol=1.66
2024-12-09 05:16:59,300 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=74.1 pTM=0.612 ipTM=0.301 tol=1.02
2024-12-09 05:17:06,232 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.9 pTM=0.612 ipTM=0.305 tol=0.682
2024-12-09 05:17:13,166 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.8 pTM=0.608 ipTM=0.299 tol=1.16
2024-12-09 05:17:20,097 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=74.1 pTM=0.613 ipTM=0.306 tol=1.4
2024-12-09 05:17:27,031 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=74.1 pTM=0.615 ipTM=0.288 tol=0.884
2024-12-09 05:17:33,966 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.9 pTM=0.612 ipTM=0.297 tol=0.733
2024-12-09 05:17:40,899 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=74.1 pTM=0.613 ipTM=0.302 tol=0.724
2024-12-09 05:17:47,835 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=73.8 pTM=0.609 ipTM=0.282 tol=2.12
2024-12-09 05:17:54,773 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73.9 pTM=0.611 ipTM=0.302 tol=1.38
2024-12-09 05:18:01,714 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=74 pTM=0.615 ipTM=0.302 tol=0.818
2024-12-09 05:18:08,660 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=73.9 pTM=0.617 ipTM=0.295 tol=0.637
2024-12-09 05:18:15,594 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=74.1 pTM=0.617 ipTM=0.304 tol=0.801
2024-12-09 05:18:22,526 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=73.9 pTM=0.613 ipTM=0.3 tol=0.65
2024-12-09 05:18:29,454 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=73.8 pTM=0.613 ipTM=0.308 tol=0.872
2024-12-09 05:18:36,386 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=74.1 pTM=0.614 ipTM=0.303 tol=0.912
2024-12-09 05:18:36,387 alphafold2_multimer_v3_model_3_seed_000 took 215.1s (30 recycles)
2024-12-09 05:18:43,579 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.9 pTM=0.634 ipTM=0.225
2024-12-09 05:18:50,561 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.8 pTM=0.651 ipTM=0.268 tol=9.16
2024-12-09 05:18:57,524 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.9 pTM=0.652 ipTM=0.293 tol=2.4
2024-12-09 05:19:04,481 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.9 pTM=0.646 ipTM=0.285 tol=1.1
2024-12-09 05:19:11,427 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.8 pTM=0.644 ipTM=0.285 tol=0.581
2024-12-09 05:19:18,387 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.8 pTM=0.644 ipTM=0.279 tol=0.668
2024-12-09 05:19:25,343 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.7 pTM=0.639 ipTM=0.276 tol=0.494
2024-12-09 05:19:25,344 alphafold2_multimer_v3_model_4_seed_000 took 48.7s (6 recycles)
2024-12-09 05:19:32,523 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.3 pTM=0.63 ipTM=0.241
2024-12-09 05:19:39,486 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.7 pTM=0.644 ipTM=0.272 tol=7.73
2024-12-09 05:19:46,458 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.5 pTM=0.643 ipTM=0.295 tol=2.09
2024-12-09 05:19:53,421 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.5 pTM=0.646 ipTM=0.289 tol=1.77
2024-12-09 05:20:00,392 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.7 pTM=0.647 ipTM=0.304 tol=3.21
2024-12-09 05:20:07,351 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=74.4 pTM=0.646 ipTM=0.309 tol=2.17
2024-12-09 05:20:14,323 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.2 pTM=0.649 ipTM=0.295 tol=2.15
2024-12-09 05:20:21,289 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=74.8 pTM=0.646 ipTM=0.311 tol=1.48
2024-12-09 05:20:28,253 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=74.6 pTM=0.643 ipTM=0.303 tol=0.877
2024-12-09 05:20:35,207 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=74.7 pTM=0.643 ipTM=0.303 tol=0.789
2024-12-09 05:20:42,169 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75 pTM=0.644 ipTM=0.295 tol=0.928
2024-12-09 05:20:49,128 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=74.6 pTM=0.64 ipTM=0.298 tol=1.19
2024-12-09 05:20:56,083 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=74.6 pTM=0.64 ipTM=0.297 tol=0.474
2024-12-09 05:20:56,083 alphafold2_multimer_v3_model_5_seed_000 took 90.5s (12 recycles)
2024-12-09 05:20:56,301 reranking models by 'multimer' metric
2024-12-09 05:20:58,132 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 05:21:47,843 Relaxation took 51.5s
2024-12-09 05:21:47,843 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74.6 pTM=0.64 ipTM=0.297
2024-12-09 05:22:26,822 Relaxation took 39.0s
2024-12-09 05:22:26,822 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=74.1 pTM=0.614 ipTM=0.303
2024-12-09 05:22:41,456 Relaxation took 14.6s
2024-12-09 05:22:41,457 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.6 pTM=0.628 ipTM=0.281
2024-12-09 05:23:11,946 Relaxation took 30.5s
2024-12-09 05:23:11,947 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.7 pTM=0.639 ipTM=0.276
2024-12-09 05:23:47,714 Relaxation took 35.8s
2024-12-09 05:23:47,714 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.4 pTM=0.622 ipTM=0.272
2024-12-09 05:23:49,088 Done