2024-12-09 05:05:20,809 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 05:05:21,100 Running on GPU
2024-12-09 05:05:23,182 Found 6 citations for tools or databases
2024-12-09 05:05:23,182 Query 1/1: TRIM68_HOXA9 (length 757)
2024-12-09 05:05:23,468 Sleeping for 10s. Reason: PENDING
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2024-12-09 05:06:39,042 Sleeping for 5s. Reason: RUNNING
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2024-12-09 05:07:05,072 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:07:11,329 Sleeping for 9s. Reason: RUNNING
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2024-12-09 05:08:04,152 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:08:13,417 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:08:19,673 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:08:27,931 Sleeping for 5s. Reason: RUNNING
2024-12-09 05:08:35,187 Sleeping for 8s. Reason: PENDING
2024-12-09 05:08:43,444 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:08:51,708 Sleeping for 6s. Reason: RUNNING
2024-12-09 05:08:57,964 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:09:07,234 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:09:17,498 Sleeping for 9s. Reason: RUNNING
2024-12-09 05:09:26,758 Sleeping for 5s. Reason: RUNNING
2024-12-09 05:09:32,019 Sleeping for 7s. Reason: RUNNING
2024-12-09 05:09:39,276 Sleeping for 7s. Reason: RUNNING
2024-12-09 05:09:46,544 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:09:54,802 Sleeping for 8s. Reason: RUNNING
2024-12-09 05:10:03,065 Sleeping for 10s. Reason: RUNNING
2024-12-09 05:10:13,332 Sleeping for 5s. Reason: RUNNING
2024-12-09 05:10:23,372 Setting max_seq=508, max_extra_seq=2048
2024-12-09 05:13:23,275 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61.7 pTM=0.507 ipTM=0.26
2024-12-09 05:13:34,767 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=62 pTM=0.512 ipTM=0.261 tol=10.6
2024-12-09 05:13:46,293 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=62 pTM=0.501 ipTM=0.248 tol=6.97
2024-12-09 05:13:57,828 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=62.5 pTM=0.5 ipTM=0.25 tol=8.3
2024-12-09 05:14:09,392 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=62.8 pTM=0.499 ipTM=0.239 tol=3.45
2024-12-09 05:14:20,963 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=63.1 pTM=0.501 ipTM=0.251 tol=2.48
2024-12-09 05:14:32,553 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=63 pTM=0.5 ipTM=0.233 tol=1.51
2024-12-09 05:14:44,145 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=63.1 pTM=0.5 ipTM=0.244 tol=1.59
2024-12-09 05:14:55,746 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=63.3 pTM=0.5 ipTM=0.24 tol=2.61
2024-12-09 05:15:07,359 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=63 pTM=0.499 ipTM=0.253 tol=3.07
2024-12-09 05:15:18,987 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.8 pTM=0.496 ipTM=0.25 tol=2.26
2024-12-09 05:15:30,630 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.9 pTM=0.5 ipTM=0.252 tol=2.37
2024-12-09 05:15:42,276 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.9 pTM=0.497 ipTM=0.239 tol=1.48
2024-12-09 05:15:53,925 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=63 pTM=0.499 ipTM=0.251 tol=1.6
2024-12-09 05:16:05,579 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=63 pTM=0.497 ipTM=0.238 tol=1.69
2024-12-09 05:16:17,244 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=63.2 pTM=0.498 ipTM=0.25 tol=1.44
2024-12-09 05:16:28,905 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=63.1 pTM=0.498 ipTM=0.232 tol=1.35
2024-12-09 05:16:40,564 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=63.1 pTM=0.499 ipTM=0.249 tol=2.01
2024-12-09 05:16:52,231 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=63.2 pTM=0.499 ipTM=0.235 tol=1.26
2024-12-09 05:17:03,892 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=63.1 pTM=0.501 ipTM=0.252 tol=1.19
2024-12-09 05:17:15,562 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=63.1 pTM=0.499 ipTM=0.25 tol=1.26
2024-12-09 05:17:27,231 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=63.2 pTM=0.5 ipTM=0.256 tol=1.19
2024-12-09 05:17:38,917 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=62.9 pTM=0.497 ipTM=0.236 tol=2.59
2024-12-09 05:17:50,591 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=63.1 pTM=0.498 ipTM=0.256 tol=2.65
2024-12-09 05:18:02,271 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=62.8 pTM=0.495 ipTM=0.244 tol=2.28
2024-12-09 05:18:13,961 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=63 pTM=0.498 ipTM=0.246 tol=1.88
2024-12-09 05:18:25,621 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=63.1 pTM=0.496 ipTM=0.24 tol=1.03
2024-12-09 05:18:37,284 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=63 pTM=0.498 ipTM=0.26 tol=1.52
2024-12-09 05:18:48,941 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=62.9 pTM=0.494 ipTM=0.245 tol=1.88
2024-12-09 05:19:00,605 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=63 pTM=0.495 ipTM=0.253 tol=1.23
2024-12-09 05:19:12,277 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=63.1 pTM=0.497 ipTM=0.249 tol=1.42
2024-12-09 05:19:12,278 alphafold2_multimer_v3_model_1_seed_000 took 524.2s (30 recycles)
2024-12-09 05:19:24,295 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=61.2 pTM=0.507 ipTM=0.357
2024-12-09 05:19:35,942 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62.4 pTM=0.506 ipTM=0.296 tol=10.8
2024-12-09 05:19:47,592 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=62 pTM=0.501 ipTM=0.271 tol=6.78
2024-12-09 05:19:59,244 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=62.2 pTM=0.5 ipTM=0.242 tol=3.51
2024-12-09 05:20:10,902 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=62.4 pTM=0.5 ipTM=0.251 tol=3.62
2024-12-09 05:20:22,551 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.4 pTM=0.5 ipTM=0.239 tol=3.18
2024-12-09 05:20:34,209 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=62.7 pTM=0.502 ipTM=0.239 tol=2.73
2024-12-09 05:20:45,862 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=62.5 pTM=0.5 ipTM=0.237 tol=2.87
2024-12-09 05:20:57,508 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=62.9 pTM=0.502 ipTM=0.257 tol=2.52
2024-12-09 05:21:09,156 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=62.8 pTM=0.501 ipTM=0.259 tol=3.16
2024-12-09 05:21:20,806 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=62.8 pTM=0.502 ipTM=0.274 tol=3.14
2024-12-09 05:21:32,456 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=62.7 pTM=0.503 ipTM=0.266 tol=3.59
2024-12-09 05:21:44,100 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=62.9 pTM=0.504 ipTM=0.253 tol=3.23
2024-12-09 05:21:55,744 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=62.5 pTM=0.501 ipTM=0.268 tol=3.61
2024-12-09 05:22:07,401 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=62.8 pTM=0.502 ipTM=0.248 tol=2.74
2024-12-09 05:22:19,050 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=62.9 pTM=0.502 ipTM=0.264 tol=2.45
2024-12-09 05:22:30,693 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=62.9 pTM=0.504 ipTM=0.249 tol=2.94
2024-12-09 05:22:42,350 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=62.7 pTM=0.501 ipTM=0.26 tol=3.99
2024-12-09 05:22:54,022 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=63.1 pTM=0.505 ipTM=0.255 tol=8.32
2024-12-09 05:23:05,668 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=62.9 pTM=0.504 ipTM=0.254 tol=4.26
2024-12-09 05:23:17,315 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63 pTM=0.503 ipTM=0.263 tol=3.47
2024-12-09 05:23:28,972 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=63 pTM=0.503 ipTM=0.261 tol=4.15
2024-12-09 05:23:40,615 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=63.1 pTM=0.504 ipTM=0.247 tol=2.08
2024-12-09 05:23:52,263 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=63.1 pTM=0.502 ipTM=0.253 tol=2.32
2024-12-09 05:24:03,930 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=63 pTM=0.5 ipTM=0.249 tol=2.74
2024-12-09 05:24:15,590 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=62.8 pTM=0.502 ipTM=0.244 tol=2.71
2024-12-09 05:24:27,244 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=63.1 pTM=0.502 ipTM=0.243 tol=1.98
2024-12-09 05:24:38,899 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=62.6 pTM=0.5 ipTM=0.237 tol=2.35
2024-12-09 05:24:50,549 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63 pTM=0.5 ipTM=0.246 tol=1.57
2024-12-09 05:25:02,207 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=62.8 pTM=0.5 ipTM=0.239 tol=1.79
2024-12-09 05:25:13,871 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=63.1 pTM=0.502 ipTM=0.243 tol=1.36
2024-12-09 05:25:13,872 alphafold2_multimer_v3_model_2_seed_000 took 361.2s (30 recycles)
2024-12-09 05:25:25,874 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=61.3 pTM=0.507 ipTM=0.215
2024-12-09 05:25:37,552 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=61.7 pTM=0.508 ipTM=0.176 tol=7.03
2024-12-09 05:25:49,204 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=61.6 pTM=0.503 ipTM=0.148 tol=8.1
2024-12-09 05:26:00,867 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=61.8 pTM=0.503 ipTM=0.16 tol=5.52
2024-12-09 05:26:12,534 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=61.9 pTM=0.502 ipTM=0.149 tol=6.97
2024-12-09 05:26:24,189 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=62.1 pTM=0.505 ipTM=0.154 tol=11.2
2024-12-09 05:26:35,841 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=62 pTM=0.504 ipTM=0.157 tol=6.2
2024-12-09 05:26:47,496 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=62.2 pTM=0.504 ipTM=0.149 tol=7.38
2024-12-09 05:26:59,157 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=62.2 pTM=0.503 ipTM=0.155 tol=7.88
2024-12-09 05:27:10,810 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=61.9 pTM=0.5 ipTM=0.153 tol=6.27
2024-12-09 05:27:22,452 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=61.8 pTM=0.503 ipTM=0.162 tol=5.59
2024-12-09 05:27:34,123 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=61.7 pTM=0.504 ipTM=0.154 tol=5.12
2024-12-09 05:27:45,759 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=61.8 pTM=0.502 ipTM=0.157 tol=5.53
2024-12-09 05:27:57,418 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=61.9 pTM=0.501 ipTM=0.153 tol=6.75
2024-12-09 05:28:09,057 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=61.7 pTM=0.497 ipTM=0.155 tol=6.83
2024-12-09 05:28:20,714 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62 pTM=0.5 ipTM=0.144 tol=7.81
2024-12-09 05:28:32,363 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61.9 pTM=0.502 ipTM=0.158 tol=7.79
2024-12-09 05:28:44,035 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.8 pTM=0.502 ipTM=0.148 tol=6.23
2024-12-09 05:28:55,696 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61.9 pTM=0.502 ipTM=0.161 tol=5.34
2024-12-09 05:29:07,381 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=62.1 pTM=0.507 ipTM=0.153 tol=6.08
2024-12-09 05:29:19,060 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=62.1 pTM=0.505 ipTM=0.161 tol=6.47
2024-12-09 05:29:30,754 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=62 pTM=0.505 ipTM=0.148 tol=6.12
2024-12-09 05:29:42,440 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=62 pTM=0.502 ipTM=0.156 tol=5.97
2024-12-09 05:29:54,125 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=62.1 pTM=0.503 ipTM=0.148 tol=5.41
2024-12-09 05:30:05,816 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61.9 pTM=0.502 ipTM=0.153 tol=5.16
2024-12-09 05:30:17,512 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=62.3 pTM=0.507 ipTM=0.149 tol=6.04
2024-12-09 05:30:29,209 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.1 pTM=0.503 ipTM=0.161 tol=7.53
2024-12-09 05:30:40,900 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=61.9 pTM=0.503 ipTM=0.153 tol=5.36
2024-12-09 05:30:52,597 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=62.1 pTM=0.504 ipTM=0.159 tol=4.18
2024-12-09 05:31:04,300 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=61.9 pTM=0.501 ipTM=0.15 tol=4.7
2024-12-09 05:31:15,985 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=61.9 pTM=0.503 ipTM=0.155 tol=4.36
2024-12-09 05:31:15,986 alphafold2_multimer_v3_model_3_seed_000 took 361.7s (30 recycles)
2024-12-09 05:31:28,078 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=60.8 pTM=0.52 ipTM=0.227
2024-12-09 05:31:39,777 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=61.2 pTM=0.519 ipTM=0.179 tol=10.7
2024-12-09 05:31:51,489 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.7 pTM=0.513 ipTM=0.155 tol=7.81
2024-12-09 05:32:03,184 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=61 pTM=0.509 ipTM=0.155 tol=5.62
2024-12-09 05:32:14,887 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=60.7 pTM=0.504 ipTM=0.147 tol=4.09
2024-12-09 05:32:26,570 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=60.8 pTM=0.504 ipTM=0.15 tol=3.92
2024-12-09 05:32:38,274 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=60.8 pTM=0.507 ipTM=0.15 tol=2.19
2024-12-09 05:32:49,930 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=60.8 pTM=0.503 ipTM=0.15 tol=2.96
2024-12-09 05:33:01,599 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=60.8 pTM=0.502 ipTM=0.155 tol=7.62
2024-12-09 05:33:13,263 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=60.8 pTM=0.504 ipTM=0.16 tol=3.21
2024-12-09 05:33:24,937 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=60.7 pTM=0.501 ipTM=0.156 tol=3.65
2024-12-09 05:33:36,588 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=61 pTM=0.508 ipTM=0.164 tol=2.6
2024-12-09 05:33:48,262 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=60.7 pTM=0.504 ipTM=0.152 tol=3.34
2024-12-09 05:33:59,939 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=60.6 pTM=0.503 ipTM=0.15 tol=1.86
2024-12-09 05:34:11,616 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=60.7 pTM=0.503 ipTM=0.158 tol=4.69
2024-12-09 05:34:23,293 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=60.8 pTM=0.504 ipTM=0.148 tol=2.88
2024-12-09 05:34:34,973 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=61 pTM=0.504 ipTM=0.152 tol=3.21
2024-12-09 05:34:46,662 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=60.8 pTM=0.503 ipTM=0.157 tol=3.01
2024-12-09 05:34:58,344 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=60.9 pTM=0.503 ipTM=0.163 tol=2.58
2024-12-09 05:35:10,046 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=60.9 pTM=0.504 ipTM=0.173 tol=3.12
2024-12-09 05:35:21,734 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=60.8 pTM=0.503 ipTM=0.174 tol=2.12
2024-12-09 05:35:33,429 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=60.8 pTM=0.505 ipTM=0.169 tol=2.62
2024-12-09 05:35:45,122 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=61.2 pTM=0.508 ipTM=0.157 tol=3.44
2024-12-09 05:35:56,809 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=61.1 pTM=0.505 ipTM=0.152 tol=4.11
2024-12-09 05:36:08,499 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=61 pTM=0.505 ipTM=0.159 tol=2.99
2024-12-09 05:36:20,197 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=61 pTM=0.508 ipTM=0.159 tol=5.06
2024-12-09 05:36:31,905 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60.8 pTM=0.504 ipTM=0.164 tol=1.74
2024-12-09 05:36:43,592 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=60.6 pTM=0.502 ipTM=0.158 tol=2.47
2024-12-09 05:36:55,278 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=60.4 pTM=0.5 ipTM=0.149 tol=3.16
2024-12-09 05:37:06,950 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.9 pTM=0.502 ipTM=0.158 tol=4.37
2024-12-09 05:37:18,625 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.8 pTM=0.504 ipTM=0.171 tol=3.81
2024-12-09 05:37:18,626 alphafold2_multimer_v3_model_4_seed_000 took 362.3s (30 recycles)
2024-12-09 05:37:30,705 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=61.7 pTM=0.516 ipTM=0.431
2024-12-09 05:37:42,438 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=62.8 pTM=0.52 ipTM=0.219 tol=12.1
2024-12-09 05:37:54,152 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=61.8 pTM=0.51 ipTM=0.217 tol=8.67
2024-12-09 05:38:05,850 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=62.2 pTM=0.507 ipTM=0.174 tol=5.96
2024-12-09 05:38:17,572 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=62.3 pTM=0.508 ipTM=0.169 tol=4.59
2024-12-09 05:38:29,289 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.5 pTM=0.506 ipTM=0.184 tol=4.13
2024-12-09 05:38:41,007 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=62.3 pTM=0.506 ipTM=0.183 tol=3.97
2024-12-09 05:38:52,719 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=62.2 pTM=0.506 ipTM=0.185 tol=5.34
2024-12-09 05:39:04,446 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=62.3 pTM=0.507 ipTM=0.188 tol=4.18
2024-12-09 05:39:16,155 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=61.9 pTM=0.508 ipTM=0.187 tol=5.76
2024-12-09 05:39:27,863 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.5 pTM=0.513 ipTM=0.186 tol=5.32
2024-12-09 05:39:39,577 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.7 pTM=0.514 ipTM=0.171 tol=3.99
2024-12-09 05:39:51,285 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=62.4 pTM=0.512 ipTM=0.164 tol=3.62
2024-12-09 05:40:03,000 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.4 pTM=0.513 ipTM=0.169 tol=3.96
2024-12-09 05:40:14,705 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=62.3 pTM=0.508 ipTM=0.168 tol=6.77
2024-12-09 05:40:26,416 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.5 pTM=0.512 ipTM=0.157 tol=3.38
2024-12-09 05:40:38,124 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=62.7 pTM=0.513 ipTM=0.143 tol=4.56
2024-12-09 05:40:49,840 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=62.4 pTM=0.512 ipTM=0.146 tol=3.98
2024-12-09 05:41:01,554 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.5 pTM=0.513 ipTM=0.144 tol=3.08
2024-12-09 05:41:13,276 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.5 pTM=0.514 ipTM=0.147 tol=3.46
2024-12-09 05:41:24,994 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.3 pTM=0.513 ipTM=0.147 tol=4.32
2024-12-09 05:41:36,731 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=62.4 pTM=0.513 ipTM=0.156 tol=3.76
2024-12-09 05:41:48,445 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=62.6 pTM=0.512 ipTM=0.147 tol=8
2024-12-09 05:42:00,160 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=62.6 pTM=0.512 ipTM=0.151 tol=2.62
2024-12-09 05:42:11,875 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=62.4 pTM=0.51 ipTM=0.158 tol=3.17
2024-12-09 05:42:23,592 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=62.5 pTM=0.512 ipTM=0.163 tol=2.06
2024-12-09 05:42:35,316 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=62.6 pTM=0.511 ipTM=0.166 tol=2.69
2024-12-09 05:42:47,027 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.5 pTM=0.512 ipTM=0.16 tol=1.42
2024-12-09 05:42:58,729 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=62.4 pTM=0.511 ipTM=0.163 tol=1.89
2024-12-09 05:43:10,437 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=62.5 pTM=0.512 ipTM=0.156 tol=1.67
2024-12-09 05:43:22,157 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.7 pTM=0.512 ipTM=0.166 tol=2.58
2024-12-09 05:43:22,158 alphafold2_multimer_v3_model_5_seed_000 took 363.2s (30 recycles)
2024-12-09 05:43:22,525 reranking models by 'multimer' metric
2024-12-09 05:43:24,674 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 05:44:23,522 Relaxation took 61.0s
2024-12-09 05:44:23,522 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=63.1 pTM=0.497 ipTM=0.249
2024-12-09 05:45:19,189 Relaxation took 55.7s
2024-12-09 05:45:19,189 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63.1 pTM=0.502 ipTM=0.243
2024-12-09 05:46:21,958 Relaxation took 62.8s
2024-12-09 05:46:21,958 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.8 pTM=0.504 ipTM=0.171
2024-12-09 05:47:23,447 Relaxation took 61.5s
2024-12-09 05:47:23,447 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.7 pTM=0.512 ipTM=0.166
2024-12-09 05:48:26,034 Relaxation took 62.6s
2024-12-09 05:48:26,034 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=61.9 pTM=0.503 ipTM=0.155
2024-12-09 05:48:27,386 Done