2024-12-09 08:07:25,069 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 08:07:25,389 Running on GPU
2024-12-09 08:07:29,473 Found 6 citations for tools or databases
2024-12-09 08:07:29,473 Query 1/1: UBE2E3_OTUB1 (length 478)
2024-12-09 08:07:29,755 Sleeping for 9s. Reason: PENDING
2024-12-09 08:07:39,019 Sleeping for 5s. Reason: RUNNING
2024-12-09 08:07:44,277 Sleeping for 6s. Reason: RUNNING
2024-12-09 08:07:50,535 Sleeping for 5s. Reason: RUNNING
2024-12-09 08:07:55,941 Sleeping for 9s. Reason: RUNNING
2024-12-09 08:08:05,198 Sleeping for 7s. Reason: RUNNING
2024-12-09 08:08:12,463 Sleeping for 8s. Reason: RUNNING
2024-12-09 08:08:20,717 Sleeping for 8s. Reason: RUNNING
2024-12-09 08:08:28,979 Sleeping for 6s. Reason: RUNNING
2024-12-09 08:08:36,454 Sleeping for 6s. Reason: PENDING
2024-12-09 08:08:42,710 Sleeping for 8s. Reason: RUNNING
2024-12-09 08:08:50,980 Sleeping for 5s. Reason: RUNNING
2024-12-09 08:08:56,233 Sleeping for 9s. Reason: RUNNING
2024-12-09 08:09:05,490 Sleeping for 10s. Reason: RUNNING
2024-12-09 08:09:15,750 Sleeping for 10s. Reason: RUNNING
2024-12-09 08:09:28,470 Setting max_seq=508, max_extra_seq=2048
2024-12-09 08:12:01,458 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.2 pTM=0.767 ipTM=0.778
2024-12-09 08:12:06,726 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=81.1 pTM=0.771 ipTM=0.792 tol=4.28
2024-12-09 08:12:11,981 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.8 pTM=0.765 ipTM=0.784 tol=1.35
2024-12-09 08:12:17,238 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.9 pTM=0.766 ipTM=0.786 tol=0.804
2024-12-09 08:12:22,485 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.9 pTM=0.767 ipTM=0.785 tol=1.16
2024-12-09 08:12:27,726 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.8 pTM=0.767 ipTM=0.787 tol=1.77
2024-12-09 08:12:32,968 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.8 pTM=0.766 ipTM=0.784 tol=1.13
2024-12-09 08:12:38,221 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.1 pTM=0.768 ipTM=0.786 tol=1.38
2024-12-09 08:12:43,470 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.9 pTM=0.767 ipTM=0.785 tol=2.12
2024-12-09 08:12:48,714 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.8 pTM=0.765 ipTM=0.782 tol=0.901
2024-12-09 08:12:53,970 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.9 pTM=0.768 ipTM=0.787 tol=0.983
2024-12-09 08:12:59,224 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.2 pTM=0.768 ipTM=0.788 tol=6.84
2024-12-09 08:13:04,477 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.9 pTM=0.768 ipTM=0.787 tol=6.85
2024-12-09 08:13:09,730 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80.8 pTM=0.767 ipTM=0.786 tol=0.69
2024-12-09 08:13:14,976 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.8 pTM=0.766 ipTM=0.785 tol=2.2
2024-12-09 08:13:20,243 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.9 pTM=0.768 ipTM=0.788 tol=1.94
2024-12-09 08:13:25,515 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81 pTM=0.77 ipTM=0.792 tol=2.17
2024-12-09 08:13:30,789 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81.2 pTM=0.77 ipTM=0.792 tol=6.18
2024-12-09 08:13:36,061 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.1 pTM=0.769 ipTM=0.792 tol=5.57
2024-12-09 08:13:41,325 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81 pTM=0.769 ipTM=0.792 tol=1.38
2024-12-09 08:13:46,583 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=80.9 pTM=0.768 ipTM=0.79 tol=1.66
2024-12-09 08:13:51,835 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=80.9 pTM=0.768 ipTM=0.788 tol=1.91
2024-12-09 08:13:57,086 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=80.9 pTM=0.768 ipTM=0.79 tol=0.502
2024-12-09 08:14:02,342 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=80.8 pTM=0.767 ipTM=0.788 tol=0.649
2024-12-09 08:14:07,604 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=80.9 pTM=0.769 ipTM=0.79 tol=0.696
2024-12-09 08:14:12,865 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=80.9 pTM=0.768 ipTM=0.79 tol=0.903
2024-12-09 08:14:18,114 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=80.9 pTM=0.768 ipTM=0.791 tol=0.88
2024-12-09 08:14:23,367 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=80.9 pTM=0.768 ipTM=0.789 tol=1.23
2024-12-09 08:14:28,624 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=81 pTM=0.769 ipTM=0.791 tol=1.15
2024-12-09 08:14:33,900 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=81.1 pTM=0.77 ipTM=0.791 tol=2.25
2024-12-09 08:14:39,155 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=80.8 pTM=0.767 ipTM=0.788 tol=1.87
2024-12-09 08:14:39,156 alphafold2_multimer_v3_model_1_seed_000 took 305.4s (30 recycles)
2024-12-09 08:14:44,560 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80.4 pTM=0.754 ipTM=0.75
2024-12-09 08:14:49,852 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.8 pTM=0.78 ipTM=0.799 tol=1.25
2024-12-09 08:14:55,121 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.6 pTM=0.776 ipTM=0.796 tol=1.09
2024-12-09 08:15:00,393 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.8 pTM=0.778 ipTM=0.801 tol=0.533
2024-12-09 08:15:05,668 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.7 pTM=0.779 ipTM=0.8 tol=1.5
2024-12-09 08:15:10,938 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.8 pTM=0.78 ipTM=0.801 tol=0.575
2024-12-09 08:15:16,207 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.8 pTM=0.78 ipTM=0.802 tol=0.779
2024-12-09 08:15:21,475 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.8 pTM=0.78 ipTM=0.801 tol=1.34
2024-12-09 08:15:26,751 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.9 pTM=0.783 ipTM=0.804 tol=0.355
2024-12-09 08:15:26,752 alphafold2_multimer_v3_model_2_seed_000 took 47.4s (8 recycles)
2024-12-09 08:15:32,181 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.1 pTM=0.773 ipTM=0.796
2024-12-09 08:15:37,484 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.8 pTM=0.776 ipTM=0.81 tol=4.48
2024-12-09 08:15:42,784 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.6 pTM=0.772 ipTM=0.802 tol=4.98
2024-12-09 08:15:48,082 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.8 pTM=0.774 ipTM=0.805 tol=1.51
2024-12-09 08:15:53,388 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.7 pTM=0.775 ipTM=0.805 tol=0.397
2024-12-09 08:15:53,388 alphafold2_multimer_v3_model_3_seed_000 took 26.5s (4 recycles)
2024-12-09 08:15:58,833 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.2 pTM=0.795 ipTM=0.819
2024-12-09 08:16:04,152 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=82.7 pTM=0.795 ipTM=0.833 tol=4.6
2024-12-09 08:16:09,463 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.5 pTM=0.79 ipTM=0.825 tol=0.879
2024-12-09 08:16:14,776 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.6 pTM=0.79 ipTM=0.825 tol=0.793
2024-12-09 08:16:20,095 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.6 pTM=0.789 ipTM=0.824 tol=0.383
2024-12-09 08:16:20,095 alphafold2_multimer_v3_model_4_seed_000 took 26.5s (4 recycles)
2024-12-09 08:16:25,540 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81.2 pTM=0.785 ipTM=0.807
2024-12-09 08:16:30,829 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.6 pTM=0.784 ipTM=0.818 tol=4.47
2024-12-09 08:16:36,113 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.6 pTM=0.779 ipTM=0.812 tol=1.24
2024-12-09 08:16:41,400 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=81.8 pTM=0.782 ipTM=0.815 tol=3.16
2024-12-09 08:16:46,693 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=81.7 pTM=0.781 ipTM=0.814 tol=3.12
2024-12-09 08:16:51,976 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.7 pTM=0.781 ipTM=0.813 tol=0.638
2024-12-09 08:16:57,260 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.7 pTM=0.782 ipTM=0.814 tol=1.76
2024-12-09 08:17:02,568 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=81.9 pTM=0.784 ipTM=0.817 tol=1.45
2024-12-09 08:17:07,885 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.8 pTM=0.783 ipTM=0.815 tol=2.09
2024-12-09 08:17:13,182 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81.9 pTM=0.784 ipTM=0.816 tol=0.627
2024-12-09 08:17:18,499 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.1 pTM=0.785 ipTM=0.818 tol=2.64
2024-12-09 08:17:23,802 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=81.9 pTM=0.783 ipTM=0.815 tol=1
2024-12-09 08:17:29,104 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=81.8 pTM=0.782 ipTM=0.813 tol=1.09
2024-12-09 08:17:34,408 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=81.8 pTM=0.781 ipTM=0.812 tol=1.64
2024-12-09 08:17:39,713 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=81.9 pTM=0.783 ipTM=0.814 tol=0.918
2024-12-09 08:17:45,012 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=81.9 pTM=0.783 ipTM=0.815 tol=1.27
2024-12-09 08:17:50,319 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=82 pTM=0.783 ipTM=0.816 tol=1.28
2024-12-09 08:17:55,629 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=82 pTM=0.785 ipTM=0.819 tol=4.03
2024-12-09 08:18:00,927 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=81.9 pTM=0.782 ipTM=0.815 tol=3.65
2024-12-09 08:18:06,234 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=82.1 pTM=0.785 ipTM=0.818 tol=1.97
2024-12-09 08:18:11,530 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=81.9 pTM=0.783 ipTM=0.815 tol=6.54
2024-12-09 08:18:16,828 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=81.8 pTM=0.782 ipTM=0.814 tol=6.21
2024-12-09 08:18:22,127 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=81.8 pTM=0.782 ipTM=0.812 tol=5.05
2024-12-09 08:18:27,433 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=81.8 pTM=0.781 ipTM=0.812 tol=0.716
2024-12-09 08:18:32,744 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=81.9 pTM=0.784 ipTM=0.816 tol=3.08
2024-12-09 08:18:38,039 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=81.8 pTM=0.782 ipTM=0.813 tol=2.76
2024-12-09 08:18:43,348 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=81.8 pTM=0.783 ipTM=0.815 tol=5.57
2024-12-09 08:18:48,656 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=81.8 pTM=0.782 ipTM=0.813 tol=3.81
2024-12-09 08:18:53,952 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=81.8 pTM=0.783 ipTM=0.816 tol=3.32
2024-12-09 08:18:59,260 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=81.9 pTM=0.784 ipTM=0.816 tol=1.16
2024-12-09 08:19:04,564 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=81.8 pTM=0.782 ipTM=0.812 tol=4.79
2024-12-09 08:19:04,564 alphafold2_multimer_v3_model_5_seed_000 took 164.3s (30 recycles)
2024-12-09 08:19:04,721 reranking models by 'multimer' metric
2024-12-09 08:19:08,089 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 08:19:21,257 Relaxation took 16.5s
2024-12-09 08:19:21,257 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.6 pTM=0.789 ipTM=0.824
2024-12-09 08:19:43,006 Relaxation took 21.7s
2024-12-09 08:19:43,006 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.8 pTM=0.782 ipTM=0.812
2024-12-09 08:20:03,700 Relaxation took 20.7s
2024-12-09 08:20:03,700 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.9 pTM=0.783 ipTM=0.804
2024-12-09 08:20:24,052 Relaxation took 20.4s
2024-12-09 08:20:24,052 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.7 pTM=0.775 ipTM=0.805
2024-12-09 08:20:36,153 Relaxation took 12.1s
2024-12-09 08:20:36,153 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.8 pTM=0.767 ipTM=0.788
2024-12-09 08:20:37,313 Done