2024-12-09 08:21:17,566 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 08:21:17,879 Running on GPU
2024-12-09 08:21:22,148 Found 6 citations for tools or databases
2024-12-09 08:21:22,148 Query 1/1: UBE3A_OR2M7 (length 1187)
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2024-12-09 08:27:56,077 Setting max_seq=508, max_extra_seq=2048
2024-12-09 08:31:07,680 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.5 pTM=0.572 ipTM=0.265
2024-12-09 08:31:41,209 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.4 pTM=0.57 ipTM=0.178 tol=6.04
2024-12-09 08:32:14,903 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73 pTM=0.564 ipTM=0.173 tol=2.07
2024-12-09 08:32:48,745 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.4 pTM=0.559 ipTM=0.169 tol=2.16
2024-12-09 08:33:22,664 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=72.9 pTM=0.555 ipTM=0.166 tol=1.54
2024-12-09 08:33:56,631 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=72.9 pTM=0.554 ipTM=0.167 tol=1.26
2024-12-09 08:34:30,659 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=72.6 pTM=0.552 ipTM=0.167 tol=2.39
2024-12-09 08:35:04,709 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=72.4 pTM=0.551 ipTM=0.169 tol=0.628
2024-12-09 08:35:38,754 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.4 pTM=0.551 ipTM=0.172 tol=2.27
2024-12-09 08:36:12,853 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=72.6 pTM=0.552 ipTM=0.17 tol=0.956
2024-12-09 08:36:46,929 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=72.5 pTM=0.549 ipTM=0.177 tol=1.35
2024-12-09 08:37:21,017 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=72.4 pTM=0.549 ipTM=0.174 tol=1.07
2024-12-09 08:37:55,088 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=72.3 pTM=0.547 ipTM=0.171 tol=0.943
2024-12-09 08:38:29,153 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=72.5 pTM=0.55 ipTM=0.172 tol=0.999
2024-12-09 08:39:03,226 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=72.6 pTM=0.553 ipTM=0.17 tol=0.974
2024-12-09 08:39:37,313 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=72.4 pTM=0.546 ipTM=0.17 tol=0.949
2024-12-09 08:40:11,360 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=72.5 pTM=0.551 ipTM=0.175 tol=1.5
2024-12-09 08:40:45,435 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=72.4 pTM=0.548 ipTM=0.172 tol=1.31
2024-12-09 08:41:19,524 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=72.5 pTM=0.548 ipTM=0.171 tol=0.85
2024-12-09 08:41:53,615 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=72.3 pTM=0.546 ipTM=0.168 tol=1.76
2024-12-09 08:42:27,701 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=72.6 pTM=0.547 ipTM=0.168 tol=1.26
2024-12-09 08:43:01,791 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=72.4 pTM=0.544 ipTM=0.164 tol=1.1
2024-12-09 08:43:35,877 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=72.5 pTM=0.547 ipTM=0.167 tol=0.877
2024-12-09 08:44:09,949 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=72.4 pTM=0.546 ipTM=0.166 tol=1.01
2024-12-09 08:44:44,034 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=72.4 pTM=0.544 ipTM=0.165 tol=0.823
2024-12-09 08:45:18,102 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=72.3 pTM=0.546 ipTM=0.168 tol=0.998
2024-12-09 08:45:52,174 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=72.4 pTM=0.546 ipTM=0.165 tol=0.752
2024-12-09 08:46:26,263 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=72.2 pTM=0.548 ipTM=0.166 tol=0.655
2024-12-09 08:47:00,340 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=72.4 pTM=0.548 ipTM=0.168 tol=1.45
2024-12-09 08:47:34,430 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=72.2 pTM=0.546 ipTM=0.169 tol=0.978
2024-12-09 08:48:08,515 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=72.6 pTM=0.549 ipTM=0.172 tol=1.28
2024-12-09 08:48:08,516 alphafold2_multimer_v3_model_1_seed_000 took 1206.4s (30 recycles)
2024-12-09 08:48:43,406 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.4 pTM=0.566 ipTM=0.193
2024-12-09 08:49:17,492 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.1 pTM=0.58 ipTM=0.179 tol=5.38
2024-12-09 08:49:51,602 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.6 pTM=0.57 ipTM=0.191 tol=1.76
2024-12-09 08:50:25,716 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.9 pTM=0.567 ipTM=0.177 tol=1.15
2024-12-09 08:50:59,845 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73.2 pTM=0.569 ipTM=0.181 tol=1.25
2024-12-09 08:51:33,967 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.2 pTM=0.567 ipTM=0.186 tol=0.848
2024-12-09 08:52:08,094 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.3 pTM=0.566 ipTM=0.186 tol=0.508
2024-12-09 08:52:42,214 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=73 pTM=0.563 ipTM=0.186 tol=0.356
2024-12-09 08:52:42,215 alphafold2_multimer_v3_model_2_seed_000 took 272.8s (7 recycles)
2024-12-09 08:53:17,129 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.9 pTM=0.566 ipTM=0.198
2024-12-09 08:53:51,202 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.6 pTM=0.56 ipTM=0.191 tol=4.78
2024-12-09 08:54:25,318 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=71.8 pTM=0.555 ipTM=0.198 tol=2.67
2024-12-09 08:54:59,413 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=71.9 pTM=0.555 ipTM=0.192 tol=1.81
2024-12-09 08:55:33,511 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=71.7 pTM=0.553 ipTM=0.187 tol=1.37
2024-12-09 08:56:07,572 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=71.9 pTM=0.557 ipTM=0.189 tol=0.469
2024-12-09 08:56:07,573 alphafold2_multimer_v3_model_3_seed_000 took 204.5s (5 recycles)
2024-12-09 08:56:42,449 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.1 pTM=0.557 ipTM=0.197
2024-12-09 08:57:16,522 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.8 pTM=0.564 ipTM=0.183 tol=3.81
2024-12-09 08:57:50,583 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.6 pTM=0.56 ipTM=0.187 tol=1.53
2024-12-09 08:58:24,670 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=71.5 pTM=0.553 ipTM=0.177 tol=0.806
2024-12-09 08:58:58,759 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72 pTM=0.558 ipTM=0.179 tol=1.34
2024-12-09 08:59:32,847 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.4 pTM=0.55 ipTM=0.177 tol=1.08
2024-12-09 09:00:06,966 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=72.2 pTM=0.559 ipTM=0.182 tol=1.83
2024-12-09 09:00:41,059 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=72 pTM=0.553 ipTM=0.182 tol=1.52
2024-12-09 09:01:15,172 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.1 pTM=0.56 ipTM=0.185 tol=1.38
2024-12-09 09:01:49,288 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=72.1 pTM=0.554 ipTM=0.176 tol=0.946
2024-12-09 09:02:23,385 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=72.2 pTM=0.561 ipTM=0.191 tol=1.31
2024-12-09 09:02:57,481 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=72.2 pTM=0.555 ipTM=0.186 tol=1.78
2024-12-09 09:03:31,564 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=72.4 pTM=0.561 ipTM=0.182 tol=0.814
2024-12-09 09:04:05,633 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=72.1 pTM=0.553 ipTM=0.177 tol=0.551
2024-12-09 09:04:39,714 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=72.5 pTM=0.564 ipTM=0.189 tol=1.68
2024-12-09 09:05:13,804 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=71.9 pTM=0.55 ipTM=0.182 tol=1.87
2024-12-09 09:05:47,893 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=72.2 pTM=0.562 ipTM=0.19 tol=1.98
2024-12-09 09:06:21,960 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=71.8 pTM=0.55 ipTM=0.181 tol=2.17
2024-12-09 09:06:56,037 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.4 pTM=0.562 ipTM=0.184 tol=1.96
2024-12-09 09:07:30,088 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=72 pTM=0.553 ipTM=0.179 tol=1.92
2024-12-09 09:08:04,149 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=72.1 pTM=0.559 ipTM=0.186 tol=1.49
2024-12-09 09:08:38,218 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.2 pTM=0.555 ipTM=0.2 tol=1.66
2024-12-09 09:09:12,307 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.5 pTM=0.564 ipTM=0.186 tol=1.24
2024-12-09 09:09:46,388 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=72.3 pTM=0.556 ipTM=0.18 tol=1.11
2024-12-09 09:10:20,468 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=72.6 pTM=0.568 ipTM=0.188 tol=1.49
2024-12-09 09:10:54,568 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=72.1 pTM=0.557 ipTM=0.179 tol=1.51
2024-12-09 09:11:28,660 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=72.9 pTM=0.574 ipTM=0.19 tol=1.77
2024-12-09 09:12:02,743 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=72.6 pTM=0.564 ipTM=0.183 tol=1.25
2024-12-09 09:12:36,826 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.8 pTM=0.572 ipTM=0.193 tol=1.61
2024-12-09 09:13:10,910 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=72.6 pTM=0.562 ipTM=0.201 tol=2.19
2024-12-09 09:13:44,997 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=72.9 pTM=0.569 ipTM=0.186 tol=1.25
2024-12-09 09:13:44,998 alphafold2_multimer_v3_model_4_seed_000 took 1056.6s (30 recycles)
2024-12-09 09:14:19,832 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.1 pTM=0.578 ipTM=0.221
2024-12-09 09:14:53,874 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.8 pTM=0.57 ipTM=0.174 tol=3.46
2024-12-09 09:15:27,965 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72 pTM=0.566 ipTM=0.177 tol=2.12
2024-12-09 09:16:02,048 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.1 pTM=0.565 ipTM=0.178 tol=2.15
2024-12-09 09:16:36,177 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.2 pTM=0.564 ipTM=0.176 tol=1.81
2024-12-09 09:17:10,312 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.1 pTM=0.564 ipTM=0.177 tol=0.773
2024-12-09 09:17:44,432 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.3 pTM=0.567 ipTM=0.18 tol=0.91
2024-12-09 09:18:18,532 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.2 pTM=0.567 ipTM=0.186 tol=1.02
2024-12-09 09:18:52,647 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72.1 pTM=0.566 ipTM=0.187 tol=0.785
2024-12-09 09:19:26,759 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.1 pTM=0.566 ipTM=0.183 tol=0.435
2024-12-09 09:19:26,760 alphafold2_multimer_v3_model_5_seed_000 took 340.9s (9 recycles)
2024-12-09 09:19:27,618 reranking models by 'multimer' metric
2024-12-09 09:19:30,920 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 09:21:04,672 Relaxation took 97.1s
2024-12-09 09:21:04,672 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.9 pTM=0.557 ipTM=0.189
2024-12-09 09:22:37,311 Relaxation took 92.6s
2024-12-09 09:22:37,312 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=72.9 pTM=0.569 ipTM=0.186
2024-12-09 09:24:18,927 Relaxation took 101.6s
2024-12-09 09:24:18,927 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73 pTM=0.563 ipTM=0.186
2024-12-09 09:26:05,643 Relaxation took 106.7s
2024-12-09 09:26:05,643 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.1 pTM=0.566 ipTM=0.183
2024-12-09 09:27:53,574 Relaxation took 107.9s
2024-12-09 09:27:53,574 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=72.6 pTM=0.549 ipTM=0.172
2024-12-09 09:27:55,944 Done