2024-12-09 09:04:06,515 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 09:04:06,875 Running on GPU
2024-12-09 09:04:09,656 Found 6 citations for tools or databases
2024-12-09 09:04:09,656 Query 1/1: UBE3C_XRN1 (length 2789)
2024-12-09 09:04:09,926 Sleeping for 8s. Reason: PENDING
2024-12-09 09:04:18,192 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:04:23,506 Sleeping for 6s. Reason: RUNNING
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2024-12-09 09:04:53,539 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:04:59,795 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:05:08,061 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:05:16,328 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:05:24,591 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:05:33,849 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:05:43,119 Sleeping for 10s. Reason: RUNNING
2024-12-09 09:05:53,391 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:06:01,662 Sleeping for 7s. Reason: RUNNING
2024-12-09 09:06:08,927 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:06:18,195 Sleeping for 9s. Reason: RUNNING
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2024-12-09 09:06:53,254 Sleeping for 5s. Reason: RUNNING
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2024-12-09 09:07:03,783 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:07:09,039 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:07:18,300 Sleeping for 10s. Reason: RUNNING
2024-12-09 09:07:28,572 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:07:37,830 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:07:47,091 Sleeping for 10s. Reason: RUNNING
2024-12-09 09:07:57,352 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:08:05,616 Sleeping for 7s. Reason: RUNNING
2024-12-09 09:08:12,891 Sleeping for 10s. Reason: RUNNING
2024-12-09 09:08:23,156 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:08:32,418 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:08:40,676 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:08:51,441 Sleeping for 7s. Reason: PENDING
2024-12-09 09:08:58,697 Sleeping for 7s. Reason: RUNNING
2024-12-09 09:09:05,953 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:09:14,207 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:09:20,467 Sleeping for 7s. Reason: RUNNING
2024-12-09 09:09:27,735 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:09:36,000 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:09:45,259 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:09:54,521 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:09:59,779 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:10:06,041 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:10:15,303 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:10:24,572 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:10:30,828 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:10:40,088 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:10:46,350 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:10:52,606 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:10:57,856 Sleeping for 10s. Reason: RUNNING
2024-12-09 09:11:08,121 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:11:14,383 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:11:20,639 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:11:25,894 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:11:34,146 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:11:40,409 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:11:45,668 Sleeping for 6s. Reason: RUNNING
2024-12-09 09:11:51,935 Sleeping for 5s. Reason: RUNNING
2024-12-09 09:11:57,194 Sleeping for 8s. Reason: RUNNING
2024-12-09 09:12:05,456 Sleeping for 9s. Reason: RUNNING
2024-12-09 09:12:24,781 Setting max_seq=508, max_extra_seq=2048
2024-12-09 09:21:16,649 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.7 pTM=0.486 ipTM=0.25
2024-12-09 09:25:48,044 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.9 pTM=0.484 ipTM=0.256 tol=12.6
2024-12-09 09:30:19,050 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=65.8 pTM=0.478 ipTM=0.312 tol=9.51
2024-12-09 09:34:50,580 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=65.8 pTM=0.473 ipTM=0.396 tol=7.48
2024-12-09 09:39:22,010 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=65.8 pTM=0.473 ipTM=0.345 tol=4.9
2024-12-09 09:43:53,597 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=65.4 pTM=0.471 ipTM=0.346 tol=6.23
2024-12-09 09:48:24,970 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=65.9 pTM=0.473 ipTM=0.362 tol=6.44
2024-12-09 09:52:56,304 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=65.6 pTM=0.474 ipTM=0.34 tol=8.68
2024-12-09 09:57:27,434 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.5 pTM=0.473 ipTM=0.325 tol=7.39
2024-12-09 10:01:58,556 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.7 pTM=0.474 ipTM=0.401 tol=4.38
2024-12-09 10:06:29,551 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=65.5 pTM=0.471 ipTM=0.352 tol=2.27
2024-12-09 10:11:00,445 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65.6 pTM=0.472 ipTM=0.338 tol=2.84
2024-12-09 10:15:31,411 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.4 pTM=0.47 ipTM=0.352 tol=7.79
2024-12-09 10:20:02,521 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.3 pTM=0.47 ipTM=0.325 tol=3.04
2024-12-09 10:24:33,808 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=65.5 pTM=0.469 ipTM=0.331 tol=2.91
2024-12-09 10:29:04,827 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.5 pTM=0.474 ipTM=0.339 tol=5.06
2024-12-09 10:33:35,542 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.4 pTM=0.471 ipTM=0.338 tol=5.82
2024-12-09 10:38:06,398 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.4 pTM=0.469 ipTM=0.329 tol=6.68
2024-12-09 10:42:37,109 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65.2 pTM=0.468 ipTM=0.31 tol=6.18
2024-12-09 10:47:07,657 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=65.7 pTM=0.47 ipTM=0.353 tol=3.49
2024-12-09 10:51:38,104 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=65.9 pTM=0.47 ipTM=0.346 tol=2.43
2024-12-09 10:56:08,629 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65.6 pTM=0.471 ipTM=0.331 tol=3.34
2024-12-09 11:00:39,156 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=65.5 pTM=0.471 ipTM=0.34 tol=2.06
2024-12-09 11:05:09,732 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=65.5 pTM=0.472 ipTM=0.327 tol=4.71
2024-12-09 11:09:40,168 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=65.8 pTM=0.472 ipTM=0.315 tol=5.4
2024-12-09 11:14:10,707 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.6 pTM=0.473 ipTM=0.339 tol=3.38
2024-12-09 11:18:41,105 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.8 pTM=0.473 ipTM=0.322 tol=2.07
2024-12-09 11:23:11,369 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.6 pTM=0.473 ipTM=0.308 tol=3.04
2024-12-09 11:27:41,605 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=65.4 pTM=0.472 ipTM=0.355 tol=5.22
2024-12-09 11:32:11,930 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.6 pTM=0.475 ipTM=0.341 tol=9.19
2024-12-09 11:36:42,279 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=65.5 pTM=0.479 ipTM=0.332 tol=8.68
2024-12-09 11:36:42,283 alphafold2_multimer_v3_model_1_seed_000 took 8650.7s (30 recycles)
2024-12-09 11:41:18,637 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.3 pTM=0.497 ipTM=0.24
2024-12-09 11:45:49,495 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=66.2 pTM=0.491 ipTM=0.246 tol=13
2024-12-09 11:50:20,045 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=66.2 pTM=0.491 ipTM=0.247 tol=9.16
2024-12-09 11:54:50,608 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=66.5 pTM=0.49 ipTM=0.249 tol=5.45
2024-12-09 11:59:21,102 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=66.7 pTM=0.489 ipTM=0.249 tol=5.92
2024-12-09 12:03:51,954 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=66.6 pTM=0.485 ipTM=0.246 tol=9.3
2024-12-09 12:08:22,326 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.1 pTM=0.491 ipTM=0.259 tol=9.22
2024-12-09 12:12:52,500 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.4 pTM=0.493 ipTM=0.269 tol=4.64
2024-12-09 12:17:22,659 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=67.1 pTM=0.496 ipTM=0.273 tol=4.89
2024-12-09 12:21:52,928 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=67.4 pTM=0.5 ipTM=0.278 tol=4.45
2024-12-09 12:26:23,410 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.2 pTM=0.496 ipTM=0.276 tol=5.17
2024-12-09 12:30:54,035 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.3 pTM=0.496 ipTM=0.268 tol=5.93
2024-12-09 12:35:24,507 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=67.1 pTM=0.492 ipTM=0.266 tol=4.32
2024-12-09 12:39:54,783 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=66.9 pTM=0.493 ipTM=0.267 tol=2.96
2024-12-09 12:44:25,100 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=67.2 pTM=0.493 ipTM=0.267 tol=4.41
2024-12-09 12:48:55,503 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=67.2 pTM=0.498 ipTM=0.276 tol=5.01
2024-12-09 12:53:25,754 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=67.2 pTM=0.497 ipTM=0.277 tol=5.49
2024-12-09 12:57:55,978 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=67.4 pTM=0.493 ipTM=0.265 tol=4.63
2024-12-09 13:02:26,321 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=66.8 pTM=0.489 ipTM=0.258 tol=3.76
2024-12-09 13:06:56,892 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=66.8 pTM=0.49 ipTM=0.255 tol=3.6
2024-12-09 13:11:27,275 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=67 pTM=0.489 ipTM=0.255 tol=3.06
2024-12-09 13:15:57,639 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=67.2 pTM=0.491 ipTM=0.256 tol=3.91
2024-12-09 13:20:28,094 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=66.8 pTM=0.49 ipTM=0.256 tol=3.28
2024-12-09 13:24:58,668 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=67 pTM=0.491 ipTM=0.255 tol=2.76
2024-12-09 13:29:29,300 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=66.8 pTM=0.49 ipTM=0.255 tol=3.13
2024-12-09 13:34:00,061 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=67.1 pTM=0.488 ipTM=0.249 tol=4.28
2024-12-09 13:38:30,738 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=67.1 pTM=0.49 ipTM=0.252 tol=5.3
2024-12-09 13:43:01,225 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=66.7 pTM=0.489 ipTM=0.257 tol=5.43
2024-12-09 13:47:31,865 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=66.9 pTM=0.489 ipTM=0.254 tol=4.57
2024-12-09 13:52:02,429 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=66.9 pTM=0.489 ipTM=0.254 tol=4.41
2024-12-09 13:56:33,101 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=67 pTM=0.49 ipTM=0.253 tol=3.79
2024-12-09 13:56:33,105 alphafold2_multimer_v3_model_2_seed_000 took 8385.2s (30 recycles)
2024-12-09 14:01:09,508 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=65.6 pTM=0.488 ipTM=0.231
2024-12-09 14:05:40,242 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.2 pTM=0.482 ipTM=0.232 tol=25.6
2024-12-09 14:10:10,700 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.2 pTM=0.487 ipTM=0.242 tol=12
2024-12-09 14:14:41,104 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=66.1 pTM=0.488 ipTM=0.241 tol=7.83
2024-12-09 14:19:11,077 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=66.2 pTM=0.493 ipTM=0.252 tol=6.59
2024-12-09 14:23:41,059 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=65.9 pTM=0.494 ipTM=0.251 tol=10.8
2024-12-09 14:28:11,258 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=66.3 pTM=0.491 ipTM=0.245 tol=8.15
2024-12-09 14:32:42,593 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.5 pTM=0.497 ipTM=0.264 tol=5.84
2024-12-09 14:37:12,946 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=66.6 pTM=0.5 ipTM=0.265 tol=7.82
2024-12-09 14:41:43,438 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.6 pTM=0.5 ipTM=0.259 tol=7.54
2024-12-09 14:46:13,834 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.6 pTM=0.499 ipTM=0.259 tol=4.45
2024-12-09 14:50:44,114 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.8 pTM=0.5 ipTM=0.26 tol=6.72
2024-12-09 14:55:14,931 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=66.7 pTM=0.5 ipTM=0.258 tol=7.01
2024-12-09 14:59:45,630 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66 pTM=0.5 ipTM=0.256 tol=8.58
2024-12-09 15:04:16,226 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66.6 pTM=0.497 ipTM=0.247 tol=9.02
2024-12-09 15:08:46,912 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.6 pTM=0.499 ipTM=0.249 tol=6.57
2024-12-09 15:13:17,566 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=66.4 pTM=0.495 ipTM=0.242 tol=9.7
2024-12-09 15:17:48,301 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=66.3 pTM=0.494 ipTM=0.239 tol=10.3
2024-12-09 15:22:19,230 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=66.2 pTM=0.492 ipTM=0.235 tol=8.62
2024-12-09 15:26:49,848 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.5 pTM=0.494 ipTM=0.239 tol=10.2
2024-12-09 15:31:20,394 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.5 pTM=0.495 ipTM=0.247 tol=8.15
2024-12-09 15:35:51,110 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.4 pTM=0.495 ipTM=0.243 tol=6.71
2024-12-09 15:40:21,350 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=66.5 pTM=0.496 ipTM=0.246 tol=6
2024-12-09 15:44:51,640 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.6 pTM=0.499 ipTM=0.258 tol=5.67
2024-12-09 15:49:22,139 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.5 pTM=0.5 ipTM=0.256 tol=8.01
2024-12-09 15:53:52,595 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=66.4 pTM=0.499 ipTM=0.257 tol=5.11
2024-12-09 15:58:23,368 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=66.4 pTM=0.5 ipTM=0.256 tol=5.52
2024-12-09 16:02:53,753 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.1 pTM=0.498 ipTM=0.252 tol=5.92
2024-12-09 16:07:24,189 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=66.2 pTM=0.499 ipTM=0.254 tol=6.21
2024-12-09 16:11:54,793 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.2 pTM=0.498 ipTM=0.253 tol=5.31
2024-12-09 16:16:25,385 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=66.1 pTM=0.495 ipTM=0.245 tol=9.22
2024-12-09 16:16:25,389 alphafold2_multimer_v3_model_3_seed_000 took 8386.7s (30 recycles)
2024-12-09 16:21:02,001 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66 pTM=0.483 ipTM=0.238
2024-12-09 16:25:32,593 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=65.8 pTM=0.483 ipTM=0.242 tol=11.3
2024-12-09 16:30:02,533 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=66.2 pTM=0.5 ipTM=0.262 tol=14.7
2024-12-09 16:34:32,426 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=65.9 pTM=0.512 ipTM=0.307 tol=8.05
2024-12-09 16:39:02,399 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66 pTM=0.507 ipTM=0.281 tol=4.34
2024-12-09 16:43:32,381 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66 pTM=0.505 ipTM=0.269 tol=2.97
2024-12-09 16:48:02,408 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.1 pTM=0.512 ipTM=0.292 tol=4.69
2024-12-09 16:52:32,384 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=66.2 pTM=0.513 ipTM=0.29 tol=4.4
2024-12-09 16:57:02,729 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.1 pTM=0.509 ipTM=0.271 tol=2.61
2024-12-09 17:01:33,064 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.2 pTM=0.515 ipTM=0.29 tol=4.74
2024-12-09 17:06:03,479 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.1 pTM=0.508 ipTM=0.269 tol=4
2024-12-09 17:10:34,149 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=66.4 pTM=0.507 ipTM=0.269 tol=3.93
2024-12-09 17:15:04,720 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=66.4 pTM=0.509 ipTM=0.271 tol=3.98
2024-12-09 17:19:35,020 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.2 pTM=0.51 ipTM=0.277 tol=4.17
2024-12-09 17:24:05,524 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=66.1 pTM=0.509 ipTM=0.27 tol=2.88
2024-12-09 17:28:35,812 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=66.4 pTM=0.51 ipTM=0.274 tol=4.72
2024-12-09 17:33:06,072 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.2 pTM=0.507 ipTM=0.265 tol=4.76
2024-12-09 17:37:36,474 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=66.4 pTM=0.507 ipTM=0.271 tol=3.09
2024-12-09 17:42:06,942 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=66 pTM=0.506 ipTM=0.269 tol=4.58
2024-12-09 17:46:37,699 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=66.4 pTM=0.512 ipTM=0.287 tol=4.91
2024-12-09 17:51:08,220 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=66.2 pTM=0.516 ipTM=0.285 tol=4.44
2024-12-09 17:55:38,573 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=66.2 pTM=0.514 ipTM=0.289 tol=4.07
2024-12-09 18:00:09,370 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=66.2 pTM=0.506 ipTM=0.266 tol=5.07
2024-12-09 18:04:39,654 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=66.3 pTM=0.511 ipTM=0.284 tol=3.98
2024-12-09 18:09:10,023 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=66.3 pTM=0.516 ipTM=0.285 tol=3.77
2024-12-09 18:13:40,260 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=66.7 pTM=0.52 ipTM=0.308 tol=3.91
2024-12-09 18:18:10,524 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=66.4 pTM=0.518 ipTM=0.293 tol=3.25
2024-12-09 18:22:40,925 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=66.3 pTM=0.514 ipTM=0.288 tol=2.7
2024-12-09 18:27:11,602 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=63.8 pTM=0.511 ipTM=0.276 tol=14
2024-12-09 18:31:42,626 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.9 pTM=0.5 ipTM=0.244 tol=12.5
2024-12-09 18:36:13,839 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.8 pTM=0.501 ipTM=0.251 tol=8.85
2024-12-09 18:36:13,843 alphafold2_multimer_v3_model_4_seed_000 took 8382.8s (30 recycles)
2024-12-09 18:40:50,141 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.3 pTM=0.49 ipTM=0.224
2024-12-09 18:45:20,919 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=65.4 pTM=0.491 ipTM=0.231 tol=10.4
2024-12-09 18:49:51,758 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=65.9 pTM=0.494 ipTM=0.237 tol=11.1
2024-12-09 18:54:22,199 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=65.9 pTM=0.494 ipTM=0.242 tol=6.7
2024-12-09 18:58:52,693 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65.8 pTM=0.497 ipTM=0.246 tol=6.52
2024-12-09 19:03:23,265 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.3 pTM=0.5 ipTM=0.252 tol=6.24
2024-12-09 19:07:53,643 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.3 pTM=0.501 ipTM=0.256 tol=3.74
2024-12-09 19:12:24,283 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.3 pTM=0.5 ipTM=0.254 tol=3.2
2024-12-09 19:16:54,709 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.4 pTM=0.503 ipTM=0.261 tol=3.32
2024-12-09 19:21:24,985 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=66.4 pTM=0.505 ipTM=0.265 tol=2.9
2024-12-09 19:25:55,279 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=66.3 pTM=0.503 ipTM=0.263 tol=3.53
2024-12-09 19:30:25,661 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.3 pTM=0.5 ipTM=0.252 tol=3.45
2024-12-09 19:34:56,199 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.2 pTM=0.498 ipTM=0.249 tol=3.39
2024-12-09 19:39:26,792 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=66.1 pTM=0.496 ipTM=0.248 tol=3.42
2024-12-09 19:43:56,885 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.2 pTM=0.499 ipTM=0.25 tol=3.35
2024-12-09 19:48:27,273 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66.4 pTM=0.503 ipTM=0.256 tol=3.49
2024-12-09 19:52:57,593 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=66.6 pTM=0.505 ipTM=0.262 tol=2.83
2024-12-09 19:57:27,993 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=66.6 pTM=0.499 ipTM=0.249 tol=5.77
2024-12-09 20:01:58,567 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=66.2 pTM=0.498 ipTM=0.25 tol=6.56
2024-12-09 20:06:28,943 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=66.4 pTM=0.504 ipTM=0.259 tol=6.45
2024-12-09 20:10:59,343 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=66.4 pTM=0.504 ipTM=0.26 tol=4.45
2024-12-09 20:15:29,708 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=66.4 pTM=0.501 ipTM=0.252 tol=4.59
2024-12-09 20:19:59,745 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=66.6 pTM=0.503 ipTM=0.26 tol=3.63
2024-12-09 20:24:30,084 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=66.4 pTM=0.502 ipTM=0.26 tol=2.34
2024-12-09 20:29:00,269 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=66.6 pTM=0.511 ipTM=0.277 tol=2.58
2024-12-09 20:33:30,438 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=66.5 pTM=0.506 ipTM=0.267 tol=3.15
2024-12-09 20:38:00,823 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=66.6 pTM=0.51 ipTM=0.277 tol=2.93
2024-12-09 20:42:30,802 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66.4 pTM=0.508 ipTM=0.269 tol=5.33
2024-12-09 20:47:00,428 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=66.4 pTM=0.509 ipTM=0.276 tol=6.37
2024-12-09 20:51:30,528 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=66.4 pTM=0.505 ipTM=0.263 tol=6.74
2024-12-09 20:56:00,612 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=66.2 pTM=0.508 ipTM=0.271 tol=7.16
2024-12-09 20:56:00,616 alphafold2_multimer_v3_model_5_seed_000 took 8381.1s (30 recycles)
2024-12-09 20:56:06,243 reranking models by 'multimer' metric
2024-12-09 20:56:11,621 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 21:10:54,072 Relaxation took 887.8s
2024-12-09 21:10:54,073 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=65.5 pTM=0.479 ipTM=0.332
2024-12-09 21:37:31,412 Relaxation took 1597.3s
2024-12-09 21:37:31,412 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=66.2 pTM=0.508 ipTM=0.271
2024-12-09 22:02:36,405 Relaxation took 1505.0s
2024-12-09 22:02:36,406 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.8 pTM=0.501 ipTM=0.251
2024-12-09 22:13:26,616 Relaxation took 650.2s
2024-12-09 22:13:26,616 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=67 pTM=0.49 ipTM=0.253
2024-12-09 22:32:32,018 Relaxation took 1145.4s
2024-12-09 22:32:32,018 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=66.1 pTM=0.495 ipTM=0.245
2024-12-09 22:32:42,990 Done