2024-12-09 12:46:26,315 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 12:46:26,656 Running on GPU
2024-12-09 12:46:30,506 Found 6 citations for tools or databases
2024-12-09 12:46:30,506 Query 1/1: UBR1_INSL5 (length 1884)
2024-12-09 12:46:30,821 Sleeping for 8s. Reason: PENDING
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2024-12-09 12:49:39,945 Sleeping for 5s. Reason: PENDING
2024-12-09 12:49:45,209 Sleeping for 5s. Reason: RUNNING
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2024-12-09 12:50:40,283 Sleeping for 9s. Reason: RUNNING
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2024-12-09 12:50:58,812 Sleeping for 10s. Reason: RUNNING
2024-12-09 12:51:09,081 Sleeping for 8s. Reason: RUNNING
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2024-12-09 12:52:01,057 Setting max_seq=508, max_extra_seq=2048
2024-12-09 12:56:33,013 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.1 pTM=0.774 ipTM=0.257
2024-12-09 12:58:44,381 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.1 pTM=0.796 ipTM=0.311 tol=4.31
2024-12-09 13:00:55,751 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.2 pTM=0.797 ipTM=0.32 tol=2.49
2024-12-09 13:03:07,088 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.6 pTM=0.796 ipTM=0.323 tol=1.64
2024-12-09 13:05:18,456 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.6 pTM=0.792 ipTM=0.317 tol=1.25
2024-12-09 13:07:29,898 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.8 pTM=0.793 ipTM=0.306 tol=0.917
2024-12-09 13:09:41,301 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.7 pTM=0.789 ipTM=0.303 tol=0.929
2024-12-09 13:11:52,733 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.9 pTM=0.792 ipTM=0.304 tol=0.985
2024-12-09 13:14:04,109 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.7 pTM=0.789 ipTM=0.307 tol=0.941
2024-12-09 13:16:15,504 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.8 pTM=0.79 ipTM=0.311 tol=1.09
2024-12-09 13:18:26,930 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.6 pTM=0.788 ipTM=0.303 tol=0.982
2024-12-09 13:20:38,426 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81 pTM=0.795 ipTM=0.313 tol=0.769
2024-12-09 13:22:49,830 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.8 pTM=0.79 ipTM=0.311 tol=0.84
2024-12-09 13:25:01,135 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80.7 pTM=0.79 ipTM=0.315 tol=0.651
2024-12-09 13:27:12,543 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.8 pTM=0.793 ipTM=0.309 tol=0.632
2024-12-09 13:29:23,959 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.9 pTM=0.795 ipTM=0.311 tol=0.567
2024-12-09 13:31:35,399 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=80.9 pTM=0.797 ipTM=0.319 tol=3.7
2024-12-09 13:33:46,802 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80.9 pTM=0.795 ipTM=0.31 tol=2.49
2024-12-09 13:35:58,210 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80.9 pTM=0.795 ipTM=0.318 tol=1.69
2024-12-09 13:38:09,622 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81 pTM=0.794 ipTM=0.32 tol=0.903
2024-12-09 13:40:21,003 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=80.9 pTM=0.792 ipTM=0.324 tol=0.749
2024-12-09 13:42:32,429 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=80.9 pTM=0.793 ipTM=0.329 tol=0.667
2024-12-09 13:44:43,829 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=80.8 pTM=0.792 ipTM=0.339 tol=1.07
2024-12-09 13:46:55,276 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=81.1 pTM=0.795 ipTM=0.334 tol=0.623
2024-12-09 13:49:06,669 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=81 pTM=0.795 ipTM=0.341 tol=0.649
2024-12-09 13:51:18,024 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=80.9 pTM=0.794 ipTM=0.344 tol=0.525
2024-12-09 13:53:29,394 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=80.8 pTM=0.795 ipTM=0.339 tol=0.533
2024-12-09 13:55:40,727 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=80.9 pTM=0.795 ipTM=0.341 tol=0.476
2024-12-09 13:55:40,729 alphafold2_multimer_v3_model_1_seed_000 took 3814.6s (27 recycles)
2024-12-09 13:57:54,470 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.8 pTM=0.785 ipTM=0.337
2024-12-09 14:00:05,950 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.7 pTM=0.802 ipTM=0.406 tol=5.09
2024-12-09 14:02:17,502 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.6 pTM=0.807 ipTM=0.41 tol=1.17
2024-12-09 14:04:29,032 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.9 pTM=0.805 ipTM=0.405 tol=0.847
2024-12-09 14:06:40,598 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.1 pTM=0.805 ipTM=0.396 tol=0.636
2024-12-09 14:08:52,225 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.1 pTM=0.805 ipTM=0.393 tol=0.716
2024-12-09 14:11:03,845 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81 pTM=0.801 ipTM=0.382 tol=0.693
2024-12-09 14:13:15,527 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.1 pTM=0.803 ipTM=0.377 tol=0.6
2024-12-09 14:15:27,201 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.1 pTM=0.803 ipTM=0.379 tol=0.696
2024-12-09 14:17:38,849 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81 pTM=0.801 ipTM=0.376 tol=0.704
2024-12-09 14:19:50,512 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80.9 pTM=0.801 ipTM=0.374 tol=0.874
2024-12-09 14:22:02,215 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.2 pTM=0.804 ipTM=0.38 tol=0.775
2024-12-09 14:24:13,858 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.1 pTM=0.802 ipTM=0.379 tol=0.583
2024-12-09 14:26:25,452 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81 pTM=0.802 ipTM=0.377 tol=0.45
2024-12-09 14:26:25,454 alphafold2_multimer_v3_model_2_seed_000 took 1842.7s (13 recycles)
2024-12-09 14:28:39,180 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.2 pTM=0.768 ipTM=0.267
2024-12-09 14:30:50,898 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.6 pTM=0.775 ipTM=0.284 tol=3.63
2024-12-09 14:33:02,556 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.4 pTM=0.778 ipTM=0.284 tol=2.35
2024-12-09 14:35:14,194 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.8 pTM=0.783 ipTM=0.292 tol=3.24
2024-12-09 14:37:25,800 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.6 pTM=0.776 ipTM=0.291 tol=1.52
2024-12-09 14:39:37,395 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.5 pTM=0.777 ipTM=0.297 tol=1.29
2024-12-09 14:41:48,936 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.6 pTM=0.778 ipTM=0.3 tol=1.16
2024-12-09 14:44:00,504 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.7 pTM=0.781 ipTM=0.305 tol=1.03
2024-12-09 14:46:12,022 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.6 pTM=0.778 ipTM=0.301 tol=0.535
2024-12-09 14:48:23,558 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.4 pTM=0.776 ipTM=0.297 tol=0.91
2024-12-09 14:50:35,123 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.6 pTM=0.778 ipTM=0.291 tol=0.605
2024-12-09 14:52:46,697 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.6 pTM=0.776 ipTM=0.296 tol=0.64
2024-12-09 14:54:58,285 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.6 pTM=0.777 ipTM=0.299 tol=0.41
2024-12-09 14:54:58,287 alphafold2_multimer_v3_model_3_seed_000 took 1710.8s (12 recycles)
2024-12-09 14:57:12,153 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.8 pTM=0.792 ipTM=0.316
2024-12-09 14:59:23,918 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.6 pTM=0.8 ipTM=0.298 tol=4.13
2024-12-09 15:01:35,660 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.4 pTM=0.8 ipTM=0.318 tol=2.04
2024-12-09 15:03:47,429 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.8 pTM=0.804 ipTM=0.313 tol=1.22
2024-12-09 15:05:59,218 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.8 pTM=0.804 ipTM=0.311 tol=1.44
2024-12-09 15:08:10,984 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.8 pTM=0.804 ipTM=0.318 tol=1.49
2024-12-09 15:10:22,765 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.8 pTM=0.805 ipTM=0.324 tol=2.88
2024-12-09 15:12:34,543 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81 pTM=0.807 ipTM=0.339 tol=1.38
2024-12-09 15:14:46,295 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=81 pTM=0.807 ipTM=0.35 tol=1.13
2024-12-09 15:16:58,022 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.9 pTM=0.806 ipTM=0.365 tol=1.03
2024-12-09 15:19:09,781 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=81 pTM=0.806 ipTM=0.348 tol=0.685
2024-12-09 15:21:21,516 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=81 pTM=0.807 ipTM=0.368 tol=0.554
2024-12-09 15:23:33,252 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81.1 pTM=0.807 ipTM=0.35 tol=1
2024-12-09 15:25:44,972 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=81.1 pTM=0.812 ipTM=0.395 tol=1.71
2024-12-09 15:27:56,702 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=81.1 pTM=0.809 ipTM=0.366 tol=0.73
2024-12-09 15:30:08,436 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=81.2 pTM=0.813 ipTM=0.42 tol=1.02
2024-12-09 15:32:20,178 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=81.4 pTM=0.818 ipTM=0.433 tol=0.636
2024-12-09 15:34:31,875 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=81.3 pTM=0.815 ipTM=0.439 tol=0.494
2024-12-09 15:34:31,877 alphafold2_multimer_v3_model_4_seed_000 took 2371.5s (17 recycles)
2024-12-09 15:36:45,726 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.4 pTM=0.777 ipTM=0.266
2024-12-09 15:38:57,564 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.4 pTM=0.792 ipTM=0.29 tol=4.08
2024-12-09 15:41:09,383 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.2 pTM=0.791 ipTM=0.303 tol=1.88
2024-12-09 15:43:21,208 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.7 pTM=0.797 ipTM=0.308 tol=1.35
2024-12-09 15:45:32,914 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.6 pTM=0.797 ipTM=0.307 tol=0.706
2024-12-09 15:47:44,711 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.1 pTM=0.802 ipTM=0.315 tol=1.08
2024-12-09 15:49:56,469 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.7 pTM=0.796 ipTM=0.306 tol=2.92
2024-12-09 15:52:08,243 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.8 pTM=0.797 ipTM=0.312 tol=0.886
2024-12-09 15:54:20,031 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.9 pTM=0.797 ipTM=0.313 tol=0.76
2024-12-09 15:56:31,758 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.8 pTM=0.796 ipTM=0.313 tol=0.872
2024-12-09 15:58:43,417 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.6 pTM=0.795 ipTM=0.308 tol=0.74
2024-12-09 16:00:55,133 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.9 pTM=0.799 ipTM=0.314 tol=1.87
2024-12-09 16:03:06,779 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.6 pTM=0.792 ipTM=0.315 tol=1.16
2024-12-09 16:05:18,534 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.8 pTM=0.796 ipTM=0.314 tol=1.36
2024-12-09 16:07:30,274 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=81.1 pTM=0.8 ipTM=0.318 tol=1.29
2024-12-09 16:09:41,946 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.8 pTM=0.797 ipTM=0.316 tol=0.41
2024-12-09 16:09:41,948 alphafold2_multimer_v3_model_5_seed_000 took 2108.0s (15 recycles)
2024-12-09 16:09:44,019 reranking models by 'multimer' metric
2024-12-09 16:09:46,175 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 16:15:15,876 Relaxation took 331.9s
2024-12-09 16:15:15,876 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.3 pTM=0.815 ipTM=0.439
2024-12-09 16:21:51,160 Relaxation took 395.3s
2024-12-09 16:21:51,160 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81 pTM=0.802 ipTM=0.377
2024-12-09 16:24:02,505 Relaxation took 131.3s
2024-12-09 16:24:02,506 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.9 pTM=0.795 ipTM=0.341
2024-12-09 16:27:28,008 Relaxation took 205.5s
2024-12-09 16:27:28,008 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.8 pTM=0.797 ipTM=0.316
2024-12-09 16:33:37,135 Relaxation took 369.1s
2024-12-09 16:33:37,136 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.6 pTM=0.777 ipTM=0.299
2024-12-09 16:33:41,622 Done