2024-12-09 12:56:39,993 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 12:56:40,301 Running on GPU
2024-12-09 12:56:45,488 Found 6 citations for tools or databases
2024-12-09 12:56:45,488 Query 1/1: UBR1_NPB (length 1874)
2024-12-09 12:56:45,786 Sleeping for 10s. Reason: PENDING
2024-12-09 12:56:56,048 Sleeping for 5s. Reason: PENDING
2024-12-09 12:57:01,301 Sleeping for 9s. Reason: PENDING
2024-12-09 12:57:10,558 Sleeping for 7s. Reason: RUNNING
2024-12-09 12:57:17,820 Sleeping for 8s. Reason: RUNNING
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2024-12-09 12:57:31,336 Sleeping for 8s. Reason: RUNNING
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2024-12-09 12:58:04,375 Sleeping for 10s. Reason: RUNNING
2024-12-09 12:58:14,635 Sleeping for 5s. Reason: RUNNING
2024-12-09 12:58:19,903 Sleeping for 9s. Reason: RUNNING
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2024-12-09 12:58:49,961 Sleeping for 7s. Reason: RUNNING
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2024-12-09 12:59:07,472 Sleeping for 5s. Reason: RUNNING
2024-12-09 12:59:12,740 Sleeping for 10s. Reason: RUNNING
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2024-12-09 12:59:29,262 Sleeping for 9s. Reason: RUNNING
2024-12-09 12:59:38,530 Sleeping for 10s. Reason: RUNNING
2024-12-09 12:59:48,792 Sleeping for 7s. Reason: RUNNING
2024-12-09 12:59:56,051 Sleeping for 7s. Reason: RUNNING
2024-12-09 13:00:03,308 Sleeping for 9s. Reason: RUNNING
2024-12-09 13:00:12,569 Sleeping for 9s. Reason: RUNNING
2024-12-09 13:00:21,827 Sleeping for 9s. Reason: RUNNING
2024-12-09 13:00:31,081 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:00:40,781 Sleeping for 9s. Reason: PENDING
2024-12-09 13:00:50,049 Sleeping for 6s. Reason: RUNNING
2024-12-09 13:00:56,313 Sleeping for 6s. Reason: RUNNING
2024-12-09 13:01:02,565 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:01:10,816 Sleeping for 10s. Reason: RUNNING
2024-12-09 13:01:21,077 Sleeping for 10s. Reason: RUNNING
2024-12-09 13:01:31,343 Sleeping for 9s. Reason: RUNNING
2024-12-09 13:01:40,602 Sleeping for 6s. Reason: RUNNING
2024-12-09 13:01:46,871 Sleeping for 5s. Reason: RUNNING
2024-12-09 13:01:52,126 Sleeping for 7s. Reason: RUNNING
2024-12-09 13:01:59,380 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:02:07,641 Sleeping for 7s. Reason: RUNNING
2024-12-09 13:02:14,896 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:02:23,163 Sleeping for 5s. Reason: RUNNING
2024-12-09 13:02:28,422 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:02:36,680 Sleeping for 9s. Reason: RUNNING
2024-12-09 13:02:45,940 Sleeping for 10s. Reason: RUNNING
2024-12-09 13:02:56,349 Sleeping for 8s. Reason: RUNNING
2024-12-09 13:03:07,575 Setting max_seq=508, max_extra_seq=2048
2024-12-09 13:07:53,952 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.8 pTM=0.785 ipTM=0.277
2024-12-09 13:10:03,266 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.8 pTM=0.803 ipTM=0.344 tol=4.74
2024-12-09 13:12:12,612 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.1 pTM=0.799 ipTM=0.323 tol=2.72
2024-12-09 13:14:21,860 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.1 pTM=0.793 ipTM=0.331 tol=0.708
2024-12-09 13:16:31,162 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.9 pTM=0.796 ipTM=0.351 tol=1.13
2024-12-09 13:18:40,476 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.1 pTM=0.798 ipTM=0.365 tol=1.45
2024-12-09 13:20:49,770 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.2 pTM=0.8 ipTM=0.369 tol=1.07
2024-12-09 13:22:58,998 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.1 pTM=0.799 ipTM=0.371 tol=0.825
2024-12-09 13:25:08,308 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.3 pTM=0.806 ipTM=0.387 tol=0.587
2024-12-09 13:27:17,596 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.4 pTM=0.8 ipTM=0.365 tol=0.827
2024-12-09 13:29:26,877 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.3 pTM=0.8 ipTM=0.366 tol=0.508
2024-12-09 13:31:36,161 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.4 pTM=0.803 ipTM=0.372 tol=0.502
2024-12-09 13:33:45,451 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=81.5 pTM=0.805 ipTM=0.366 tol=0.411
2024-12-09 13:33:45,453 alphafold2_multimer_v3_model_1_seed_000 took 1833.3s (12 recycles)
2024-12-09 13:35:57,079 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.8 pTM=0.795 ipTM=0.355
2024-12-09 13:38:06,595 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.4 pTM=0.812 ipTM=0.44 tol=3.48
2024-12-09 13:40:16,100 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.9 pTM=0.812 ipTM=0.444 tol=1.15
2024-12-09 13:42:25,583 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.2 pTM=0.805 ipTM=0.42 tol=1.32
2024-12-09 13:44:35,088 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.4 pTM=0.809 ipTM=0.44 tol=1.06
2024-12-09 13:46:44,585 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.4 pTM=0.809 ipTM=0.441 tol=0.416
2024-12-09 13:46:44,587 alphafold2_multimer_v3_model_2_seed_000 took 777.1s (5 recycles)
2024-12-09 13:48:56,116 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.9 pTM=0.779 ipTM=0.295
2024-12-09 13:51:05,656 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.3 pTM=0.793 ipTM=0.334 tol=3.67
2024-12-09 13:53:15,099 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.3 pTM=0.785 ipTM=0.354 tol=7.45
2024-12-09 13:55:24,547 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.1 pTM=0.785 ipTM=0.368 tol=6
2024-12-09 13:57:34,010 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.6 pTM=0.791 ipTM=0.38 tol=3.11
2024-12-09 13:59:43,444 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.7 pTM=0.791 ipTM=0.388 tol=7.42
2024-12-09 14:01:52,847 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.4 pTM=0.792 ipTM=0.406 tol=7.06
2024-12-09 14:04:02,217 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.6 pTM=0.792 ipTM=0.388 tol=1.24
2024-12-09 14:06:11,618 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=81.5 pTM=0.791 ipTM=0.389 tol=7.23
2024-12-09 14:08:21,063 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.4 pTM=0.792 ipTM=0.394 tol=6.33
2024-12-09 14:10:30,484 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.2 pTM=0.788 ipTM=0.388 tol=5.15
2024-12-09 14:12:39,975 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.4 pTM=0.792 ipTM=0.399 tol=4.43
2024-12-09 14:14:49,438 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=81.5 pTM=0.792 ipTM=0.394 tol=5.94
2024-12-09 14:16:58,896 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=81.4 pTM=0.792 ipTM=0.399 tol=7.15
2024-12-09 14:19:08,359 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=81.5 pTM=0.794 ipTM=0.384 tol=0.863
2024-12-09 14:21:17,798 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=81.4 pTM=0.792 ipTM=0.394 tol=0.754
2024-12-09 14:23:27,280 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=81.4 pTM=0.792 ipTM=0.391 tol=2.53
2024-12-09 14:25:36,723 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=81.8 pTM=0.797 ipTM=0.396 tol=2.62
2024-12-09 14:27:46,182 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=81.4 pTM=0.79 ipTM=0.393 tol=6.92
2024-12-09 14:29:55,717 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=81.6 pTM=0.795 ipTM=0.396 tol=6.42
2024-12-09 14:32:05,139 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=81.2 pTM=0.788 ipTM=0.384 tol=6.37
2024-12-09 14:34:14,638 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=81.5 pTM=0.794 ipTM=0.395 tol=6.36
2024-12-09 14:36:24,020 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=81.3 pTM=0.788 ipTM=0.39 tol=6.84
2024-12-09 14:38:33,478 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=81.2 pTM=0.79 ipTM=0.398 tol=6.02
2024-12-09 14:40:42,959 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=81.4 pTM=0.792 ipTM=0.396 tol=5.18
2024-12-09 14:42:52,391 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=81.2 pTM=0.789 ipTM=0.391 tol=5.32
2024-12-09 14:45:01,747 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=81.4 pTM=0.788 ipTM=0.382 tol=6
2024-12-09 14:47:11,202 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=81.2 pTM=0.792 ipTM=0.392 tol=5.27
2024-12-09 14:49:20,689 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=81.3 pTM=0.794 ipTM=0.402 tol=1.55
2024-12-09 14:51:30,134 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=81.4 pTM=0.793 ipTM=0.403 tol=2.95
2024-12-09 14:53:39,569 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=81.4 pTM=0.791 ipTM=0.412 tol=6.7
2024-12-09 14:53:39,571 alphafold2_multimer_v3_model_3_seed_000 took 4012.9s (30 recycles)
2024-12-09 14:55:51,221 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.9 pTM=0.785 ipTM=0.246
2024-12-09 14:58:00,807 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.7 pTM=0.799 ipTM=0.289 tol=4.66
2024-12-09 15:00:10,389 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=81.1 pTM=0.811 ipTM=0.325 tol=8.54
2024-12-09 15:02:19,995 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.8 pTM=0.802 ipTM=0.351 tol=5.54
2024-12-09 15:04:29,597 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=81.2 pTM=0.807 ipTM=0.352 tol=3.13
2024-12-09 15:06:39,164 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=81.3 pTM=0.808 ipTM=0.347 tol=7.28
2024-12-09 15:08:48,797 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=81.2 pTM=0.808 ipTM=0.362 tol=5.95
2024-12-09 15:10:58,364 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81.2 pTM=0.808 ipTM=0.37 tol=2.15
2024-12-09 15:13:07,998 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=81.6 pTM=0.813 ipTM=0.37 tol=1.03
2024-12-09 15:15:17,577 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=81.6 pTM=0.811 ipTM=0.368 tol=0.649
2024-12-09 15:17:27,093 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=81.4 pTM=0.811 ipTM=0.374 tol=0.484
2024-12-09 15:17:27,095 alphafold2_multimer_v3_model_4_seed_000 took 1425.5s (10 recycles)
2024-12-09 15:19:38,664 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.7 pTM=0.779 ipTM=0.321
2024-12-09 15:21:48,270 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.5 pTM=0.8 ipTM=0.371 tol=7.79
2024-12-09 15:23:57,949 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.9 pTM=0.805 ipTM=0.384 tol=1.28
2024-12-09 15:26:07,617 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=81 pTM=0.804 ipTM=0.39 tol=1.49
2024-12-09 15:28:17,307 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=81.2 pTM=0.805 ipTM=0.396 tol=1.98
2024-12-09 15:30:26,994 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=81.2 pTM=0.804 ipTM=0.392 tol=1.85
2024-12-09 15:32:36,657 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.3 pTM=0.806 ipTM=0.394 tol=1.2
2024-12-09 15:34:46,324 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=81.5 pTM=0.807 ipTM=0.397 tol=1.64
2024-12-09 15:36:56,038 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.4 pTM=0.809 ipTM=0.395 tol=0.664
2024-12-09 15:39:05,730 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81.7 pTM=0.809 ipTM=0.377 tol=0.55
2024-12-09 15:41:15,312 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=81.4 pTM=0.808 ipTM=0.4 tol=0.538
2024-12-09 15:43:24,917 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=81.4 pTM=0.808 ipTM=0.402 tol=0.494
2024-12-09 15:43:24,919 alphafold2_multimer_v3_model_5_seed_000 took 1555.8s (11 recycles)
2024-12-09 15:43:26,953 reranking models by 'multimer' metric
2024-12-09 15:43:32,241 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 15:47:28,200 Relaxation took 241.2s
2024-12-09 15:47:28,200 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.4 pTM=0.809 ipTM=0.441
2024-12-09 15:53:24,156 Relaxation took 356.0s
2024-12-09 15:53:24,156 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.4 pTM=0.791 ipTM=0.412
2024-12-09 15:57:14,457 Relaxation took 230.3s
2024-12-09 15:57:14,457 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.4 pTM=0.808 ipTM=0.402
2024-12-09 16:43:27,934 Relaxation took 2773.5s
2024-12-09 16:43:27,934 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.4 pTM=0.811 ipTM=0.374
2024-12-09 16:48:21,273 Relaxation took 293.3s
2024-12-09 16:48:21,273 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.5 pTM=0.805 ipTM=0.366
2024-12-09 16:48:26,072 Done