2024-12-09 16:01:12,660 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 16:01:12,973 Running on GPU
2024-12-09 16:01:17,111 Found 6 citations for tools or databases
2024-12-09 16:01:17,111 Query 1/1: UBR2_INSL5 (length 1890)
2024-12-09 16:01:17,433 Sleeping for 9s. Reason: PENDING
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2024-12-09 16:04:19,647 Sleeping for 5s. Reason: RUNNING
2024-12-09 16:04:26,425 Sleeping for 6s. Reason: PENDING
2024-12-09 16:04:32,687 Sleeping for 7s. Reason: PENDING
2024-12-09 16:04:39,960 Sleeping for 8s. Reason: RUNNING
2024-12-09 16:04:48,225 Sleeping for 5s. Reason: RUNNING
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2024-12-09 16:05:11,263 Sleeping for 8s. Reason: RUNNING
2024-12-09 16:05:19,520 Sleeping for 10s. Reason: RUNNING
2024-12-09 16:05:29,789 Sleeping for 9s. Reason: RUNNING
2024-12-09 16:05:39,049 Sleeping for 8s. Reason: RUNNING
2024-12-09 16:05:47,319 Sleeping for 9s. Reason: RUNNING
2024-12-09 16:05:56,595 Sleeping for 7s. Reason: RUNNING
2024-12-09 16:06:03,849 Sleeping for 7s. Reason: RUNNING
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2024-12-09 16:06:48,295 Setting max_seq=508, max_extra_seq=2048
2024-12-09 16:11:40,632 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.6 pTM=0.787 ipTM=0.235
2024-12-09 16:13:53,827 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.2 pTM=0.789 ipTM=0.261 tol=3.81
2024-12-09 16:16:07,148 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.7 pTM=0.785 ipTM=0.242 tol=2.8
2024-12-09 16:18:20,384 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.6 pTM=0.777 ipTM=0.256 tol=1.64
2024-12-09 16:20:33,705 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.9 pTM=0.79 ipTM=0.27 tol=1.68
2024-12-09 16:22:46,954 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.9 pTM=0.786 ipTM=0.283 tol=0.866
2024-12-09 16:25:00,217 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.9 pTM=0.786 ipTM=0.297 tol=0.788
2024-12-09 16:27:13,493 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.9 pTM=0.788 ipTM=0.308 tol=0.573
2024-12-09 16:29:26,737 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.1 pTM=0.793 ipTM=0.306 tol=0.455
2024-12-09 16:29:26,739 alphafold2_multimer_v3_model_1_seed_000 took 1352.6s (8 recycles)
2024-12-09 16:31:42,239 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.9 pTM=0.787 ipTM=0.282
2024-12-09 16:33:55,596 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.8 pTM=0.798 ipTM=0.312 tol=2.47
2024-12-09 16:36:08,929 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.2 pTM=0.795 ipTM=0.319 tol=1.09
2024-12-09 16:38:22,252 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.6 pTM=0.789 ipTM=0.312 tol=0.98
2024-12-09 16:40:35,644 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.6 pTM=0.795 ipTM=0.313 tol=0.716
2024-12-09 16:42:49,007 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80.7 pTM=0.795 ipTM=0.319 tol=0.545
2024-12-09 16:45:02,360 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.8 pTM=0.796 ipTM=0.318 tol=0.516
2024-12-09 16:47:15,724 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.7 pTM=0.797 ipTM=0.314 tol=0.4
2024-12-09 16:47:15,726 alphafold2_multimer_v3_model_2_seed_000 took 1066.9s (7 recycles)
2024-12-09 16:49:31,117 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80 pTM=0.776 ipTM=0.264
2024-12-09 16:51:44,423 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.7 pTM=0.776 ipTM=0.279 tol=2.71
2024-12-09 16:53:57,744 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.6 pTM=0.775 ipTM=0.299 tol=2.15
2024-12-09 16:56:11,028 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.6 pTM=0.774 ipTM=0.299 tol=1.81
2024-12-09 16:58:24,230 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.4 pTM=0.775 ipTM=0.31 tol=2.65
2024-12-09 17:00:37,513 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.9 pTM=0.78 ipTM=0.308 tol=1.42
2024-12-09 17:02:50,704 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.8 pTM=0.776 ipTM=0.308 tol=1.22
2024-12-09 17:05:03,958 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.8 pTM=0.778 ipTM=0.308 tol=1.09
2024-12-09 17:07:17,246 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.8 pTM=0.778 ipTM=0.311 tol=0.54
2024-12-09 17:09:30,610 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.1 pTM=0.786 ipTM=0.313 tol=0.781
2024-12-09 17:11:43,921 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.1 pTM=0.785 ipTM=0.313 tol=0.897
2024-12-09 17:13:57,246 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.9 pTM=0.781 ipTM=0.307 tol=0.781
2024-12-09 17:16:10,568 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.9 pTM=0.782 ipTM=0.31 tol=0.562
2024-12-09 17:18:23,842 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=81.1 pTM=0.784 ipTM=0.308 tol=0.628
2024-12-09 17:20:37,078 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.9 pTM=0.785 ipTM=0.31 tol=1.35
2024-12-09 17:22:50,379 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.9 pTM=0.785 ipTM=0.309 tol=0.671
2024-12-09 17:25:03,615 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=81.1 pTM=0.787 ipTM=0.302 tol=0.82
2024-12-09 17:27:16,844 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.9 pTM=0.784 ipTM=0.302 tol=0.902
2024-12-09 17:29:30,055 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.9 pTM=0.785 ipTM=0.304 tol=0.657
2024-12-09 17:31:43,246 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.8 pTM=0.782 ipTM=0.306 tol=0.99
2024-12-09 17:33:56,477 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.9 pTM=0.786 ipTM=0.302 tol=0.699
2024-12-09 17:36:09,797 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=81.2 pTM=0.79 ipTM=0.304 tol=1.24
2024-12-09 17:38:23,024 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=81 pTM=0.785 ipTM=0.313 tol=1.52
2024-12-09 17:40:36,197 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.9 pTM=0.782 ipTM=0.301 tol=0.823
2024-12-09 17:42:49,434 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=81 pTM=0.785 ipTM=0.297 tol=0.787
2024-12-09 17:45:02,628 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=81 pTM=0.786 ipTM=0.302 tol=0.668
2024-12-09 17:47:15,886 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=81 pTM=0.785 ipTM=0.301 tol=0.959
2024-12-09 17:49:29,181 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=81 pTM=0.786 ipTM=0.307 tol=1.24
2024-12-09 17:51:42,485 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=81.1 pTM=0.787 ipTM=0.302 tol=1.17
2024-12-09 17:53:55,701 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=80.9 pTM=0.783 ipTM=0.298 tol=0.75
2024-12-09 17:56:08,979 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=81.1 pTM=0.788 ipTM=0.297 tol=0.816
2024-12-09 17:56:08,981 alphafold2_multimer_v3_model_3_seed_000 took 4131.2s (30 recycles)
2024-12-09 17:58:24,455 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.1 pTM=0.788 ipTM=0.263
2024-12-09 18:00:37,945 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.6 pTM=0.794 ipTM=0.282 tol=3.09
2024-12-09 18:02:51,390 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.8 pTM=0.802 ipTM=0.312 tol=2.4
2024-12-09 18:05:04,849 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81 pTM=0.804 ipTM=0.308 tol=0.98
2024-12-09 18:07:18,363 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=81.1 pTM=0.809 ipTM=0.314 tol=1.15
2024-12-09 18:09:31,829 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=81.3 pTM=0.809 ipTM=0.317 tol=0.989
2024-12-09 18:11:45,234 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=81.2 pTM=0.809 ipTM=0.31 tol=0.55
2024-12-09 18:13:58,678 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81.4 pTM=0.813 ipTM=0.318 tol=0.826
2024-12-09 18:16:12,054 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=81.4 pTM=0.815 ipTM=0.317 tol=0.521
2024-12-09 18:18:25,481 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=81.4 pTM=0.816 ipTM=0.31 tol=0.569
2024-12-09 18:20:38,937 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=81.4 pTM=0.816 ipTM=0.313 tol=0.736
2024-12-09 18:22:52,363 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=81.2 pTM=0.812 ipTM=0.32 tol=1.26
2024-12-09 18:25:05,799 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81.5 pTM=0.817 ipTM=0.333 tol=1.61
2024-12-09 18:27:19,236 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=81.6 pTM=0.817 ipTM=0.333 tol=0.925
2024-12-09 18:29:32,635 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=81.4 pTM=0.815 ipTM=0.333 tol=0.606
2024-12-09 18:31:46,044 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=81.4 pTM=0.816 ipTM=0.33 tol=0.449
2024-12-09 18:31:46,046 alphafold2_multimer_v3_model_4_seed_000 took 2135.0s (15 recycles)
2024-12-09 18:34:01,526 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79 pTM=0.774 ipTM=0.24
2024-12-09 18:36:14,962 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.4 pTM=0.784 ipTM=0.268 tol=2.61
2024-12-09 18:38:28,446 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=80.4 pTM=0.786 ipTM=0.281 tol=1.48
2024-12-09 18:40:41,915 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.6 pTM=0.784 ipTM=0.286 tol=0.848
2024-12-09 18:42:55,320 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.4 pTM=0.786 ipTM=0.281 tol=0.739
2024-12-09 18:45:08,811 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.8 pTM=0.79 ipTM=0.292 tol=0.775
2024-12-09 18:47:22,229 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.7 pTM=0.788 ipTM=0.285 tol=0.994
2024-12-09 18:49:35,678 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.9 pTM=0.792 ipTM=0.294 tol=0.419
2024-12-09 18:49:35,680 alphafold2_multimer_v3_model_5_seed_000 took 1067.6s (7 recycles)
2024-12-09 18:49:37,731 reranking models by 'multimer' metric
2024-12-09 18:49:41,742 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 18:55:45,077 Relaxation took 367.3s
2024-12-09 18:55:45,078 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=81.4 pTM=0.816 ipTM=0.33
2024-12-09 19:01:22,039 Relaxation took 337.0s
2024-12-09 19:01:22,039 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.7 pTM=0.797 ipTM=0.314
2024-12-09 19:04:41,391 Relaxation took 199.4s
2024-12-09 19:04:41,392 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.1 pTM=0.793 ipTM=0.306
2024-12-09 19:10:39,430 Relaxation took 358.0s
2024-12-09 19:10:39,430 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.1 pTM=0.788 ipTM=0.297
2024-12-09 19:16:27,123 Relaxation took 347.7s
2024-12-09 19:16:27,123 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.9 pTM=0.792 ipTM=0.294
2024-12-09 19:16:31,885 Done