2024-12-09 16:49:07,635 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 16:49:07,952 Running on GPU
2024-12-09 16:49:11,934 Found 6 citations for tools or databases
2024-12-09 16:49:11,934 Query 1/1: UBR3_FAHD1 (length 2109)
2024-12-09 16:49:12,229 Sleeping for 7s. Reason: PENDING
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2024-12-09 16:52:47,041 Sleeping for 10s. Reason: PENDING
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2024-12-09 16:55:42,495 Sleeping for 10s. Reason: RUNNING
2024-12-09 16:55:57,462 Setting max_seq=508, max_extra_seq=2048
2024-12-09 17:02:07,944 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.2 pTM=0.715 ipTM=0.198
2024-12-09 17:05:09,462 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.1 pTM=0.714 ipTM=0.194 tol=6.63
2024-12-09 17:08:11,015 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.6 pTM=0.726 ipTM=0.204 tol=8.99
2024-12-09 17:11:12,533 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.7 pTM=0.729 ipTM=0.217 tol=2.54
2024-12-09 17:14:14,046 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.8 pTM=0.731 ipTM=0.218 tol=1.19
2024-12-09 17:17:15,531 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.8 pTM=0.732 ipTM=0.222 tol=1.24
2024-12-09 17:20:16,973 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.8 pTM=0.73 ipTM=0.222 tol=0.746
2024-12-09 17:23:18,453 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79 pTM=0.732 ipTM=0.225 tol=0.802
2024-12-09 17:26:19,975 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.9 pTM=0.734 ipTM=0.226 tol=0.807
2024-12-09 17:29:21,481 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.1 pTM=0.735 ipTM=0.226 tol=0.44
2024-12-09 17:29:21,483 alphafold2_multimer_v3_model_1_seed_000 took 1998.5s (9 recycles)
2024-12-09 17:32:25,810 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.4 pTM=0.707 ipTM=0.209
2024-12-09 17:35:27,544 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.6 pTM=0.725 ipTM=0.231 tol=10.1
2024-12-09 17:38:29,318 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=77.6 pTM=0.74 ipTM=0.262 tol=1.65
2024-12-09 17:41:31,013 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.1 pTM=0.742 ipTM=0.266 tol=4.73
2024-12-09 17:44:32,741 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.2 pTM=0.745 ipTM=0.255 tol=2.99
2024-12-09 17:47:34,401 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.6 pTM=0.745 ipTM=0.258 tol=1.47
2024-12-09 17:50:36,032 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.6 pTM=0.742 ipTM=0.255 tol=0.917
2024-12-09 17:53:37,733 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.6 pTM=0.745 ipTM=0.263 tol=2.5
2024-12-09 17:56:39,409 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.5 pTM=0.748 ipTM=0.268 tol=1.18
2024-12-09 17:59:41,139 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.8 pTM=0.746 ipTM=0.263 tol=0.515
2024-12-09 18:02:42,806 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=78.8 pTM=0.745 ipTM=0.263 tol=0.616
2024-12-09 18:05:44,490 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=78.7 pTM=0.744 ipTM=0.264 tol=0.665
2024-12-09 18:08:46,134 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=78.6 pTM=0.745 ipTM=0.265 tol=1.17
2024-12-09 18:11:47,820 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=78.7 pTM=0.744 ipTM=0.26 tol=0.618
2024-12-09 18:14:49,485 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=78.5 pTM=0.744 ipTM=0.262 tol=0.982
2024-12-09 18:17:51,186 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.7 pTM=0.745 ipTM=0.262 tol=0.553
2024-12-09 18:20:52,905 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.9 pTM=0.745 ipTM=0.259 tol=0.857
2024-12-09 18:23:54,644 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78.9 pTM=0.746 ipTM=0.26 tol=0.507
2024-12-09 18:26:56,378 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78.8 pTM=0.746 ipTM=0.26 tol=0.859
2024-12-09 18:29:58,043 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78.8 pTM=0.745 ipTM=0.261 tol=0.588
2024-12-09 18:32:59,757 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=78.8 pTM=0.746 ipTM=0.264 tol=0.52
2024-12-09 18:36:01,480 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.8 pTM=0.746 ipTM=0.26 tol=0.514
2024-12-09 18:39:03,213 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=78.8 pTM=0.744 ipTM=0.262 tol=0.5
2024-12-09 18:42:04,850 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.8 pTM=0.743 ipTM=0.261 tol=0.854
2024-12-09 18:45:06,494 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=78.8 pTM=0.744 ipTM=0.261 tol=0.484
2024-12-09 18:45:06,496 alphafold2_multimer_v3_model_2_seed_000 took 4542.5s (24 recycles)
2024-12-09 18:48:10,913 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.8 pTM=0.706 ipTM=0.19
2024-12-09 18:51:12,578 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.1 pTM=0.733 ipTM=0.289 tol=11.8
2024-12-09 18:54:14,230 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.8 pTM=0.739 ipTM=0.311 tol=2.12
2024-12-09 18:57:15,832 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.8 pTM=0.736 ipTM=0.316 tol=1.3
2024-12-09 19:00:17,450 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.1 pTM=0.742 ipTM=0.318 tol=0.559
2024-12-09 19:03:18,996 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.1 pTM=0.741 ipTM=0.322 tol=0.515
2024-12-09 19:06:20,580 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79 pTM=0.739 ipTM=0.323 tol=0.44
2024-12-09 19:06:20,582 alphafold2_multimer_v3_model_3_seed_000 took 1271.5s (6 recycles)
2024-12-09 19:09:25,030 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77 pTM=0.734 ipTM=0.21
2024-12-09 19:12:26,781 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.4 pTM=0.75 ipTM=0.253 tol=5.75
2024-12-09 19:15:28,446 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.2 pTM=0.752 ipTM=0.273 tol=2.35
2024-12-09 19:18:30,099 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.7 pTM=0.75 ipTM=0.278 tol=2.91
2024-12-09 19:21:31,709 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.8 pTM=0.75 ipTM=0.282 tol=1.22
2024-12-09 19:24:33,339 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.8 pTM=0.75 ipTM=0.281 tol=0.962
2024-12-09 19:27:34,946 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.9 pTM=0.75 ipTM=0.286 tol=0.914
2024-12-09 19:30:36,587 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.1 pTM=0.75 ipTM=0.286 tol=0.478
2024-12-09 19:30:36,590 alphafold2_multimer_v3_model_4_seed_000 took 1453.4s (7 recycles)
2024-12-09 19:33:40,771 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.7 pTM=0.702 ipTM=0.213
2024-12-09 19:36:42,453 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.2 pTM=0.722 ipTM=0.243 tol=4.08
2024-12-09 19:39:44,107 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.8 pTM=0.728 ipTM=0.252 tol=1.65
2024-12-09 19:42:45,768 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.2 pTM=0.731 ipTM=0.262 tol=1.39
2024-12-09 19:45:47,437 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.4 pTM=0.733 ipTM=0.271 tol=1.52
2024-12-09 19:48:49,087 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.5 pTM=0.736 ipTM=0.273 tol=1.58
2024-12-09 19:51:50,686 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.6 pTM=0.736 ipTM=0.281 tol=1.78
2024-12-09 19:54:52,238 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.9 pTM=0.738 ipTM=0.279 tol=0.934
2024-12-09 19:57:53,776 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.9 pTM=0.739 ipTM=0.28 tol=0.806
2024-12-09 20:00:55,403 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.1 pTM=0.744 ipTM=0.284 tol=1.29
2024-12-09 20:03:56,963 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.9 pTM=0.739 ipTM=0.281 tol=1.42
2024-12-09 20:06:58,590 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.9 pTM=0.741 ipTM=0.285 tol=1.39
2024-12-09 20:10:00,172 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.9 pTM=0.74 ipTM=0.284 tol=1.47
2024-12-09 20:13:01,854 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.9 pTM=0.742 ipTM=0.284 tol=1.34
2024-12-09 20:16:03,588 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79 pTM=0.74 ipTM=0.279 tol=0.61
2024-12-09 20:19:05,219 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.9 pTM=0.741 ipTM=0.284 tol=1.12
2024-12-09 20:22:06,866 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79 pTM=0.742 ipTM=0.29 tol=1.8
2024-12-09 20:25:08,475 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79 pTM=0.741 ipTM=0.285 tol=0.417
2024-12-09 20:25:08,478 alphafold2_multimer_v3_model_5_seed_000 took 3269.3s (17 recycles)
2024-12-09 20:25:11,018 reranking models by 'multimer' metric
2024-12-09 20:25:15,157 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 20:29:44,978 Relaxation took 274.0s
2024-12-09 20:29:44,978 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79 pTM=0.739 ipTM=0.323
2024-12-09 20:32:54,909 Relaxation took 189.9s
2024-12-09 20:32:54,910 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.1 pTM=0.75 ipTM=0.286
2024-12-09 21:27:39,222 Relaxation took 3284.3s
2024-12-09 21:27:39,222 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79 pTM=0.741 ipTM=0.285
2024-12-09 21:32:43,075 Relaxation took 303.9s
2024-12-09 21:32:43,076 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.8 pTM=0.744 ipTM=0.261
2024-12-09 21:37:09,745 Relaxation took 266.7s
2024-12-09 21:37:09,745 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.1 pTM=0.735 ipTM=0.226
2024-12-09 21:37:15,501 Done