2024-12-09 17:00:16,666 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 17:00:17,105 Running on GPU
2024-12-09 17:00:20,917 Found 6 citations for tools or databases
2024-12-09 17:00:20,917 Query 1/1: UBR3_HSPB6 (length 2048)
2024-12-09 17:00:21,267 Sleeping for 9s. Reason: PENDING
2024-12-09 17:00:30,523 Sleeping for 7s. Reason: PENDING
2024-12-09 17:00:37,778 Sleeping for 9s. Reason: RUNNING
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2024-12-09 17:03:53,525 Sleeping for 10s. Reason: PENDING
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2024-12-09 17:04:51,580 Sleeping for 6s. Reason: RUNNING
2024-12-09 17:04:57,842 Sleeping for 6s. Reason: RUNNING
2024-12-09 17:05:04,092 Sleeping for 7s. Reason: RUNNING
2024-12-09 17:05:11,356 Sleeping for 9s. Reason: RUNNING
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2024-12-09 17:05:27,874 Sleeping for 9s. Reason: RUNNING
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2024-12-09 17:05:42,380 Sleeping for 9s. Reason: RUNNING
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2024-12-09 17:06:08,164 Sleeping for 8s. Reason: RUNNING
2024-12-09 17:06:19,863 Setting max_seq=508, max_extra_seq=2048
2024-12-09 17:10:54,387 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.5 pTM=0.767 ipTM=0.384
2024-12-09 17:13:33,562 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.8 pTM=0.781 ipTM=0.389 tol=3.16
2024-12-09 17:16:12,734 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=76.2 pTM=0.777 ipTM=0.387 tol=1.38
2024-12-09 17:18:51,891 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.2 pTM=0.776 ipTM=0.396 tol=0.671
2024-12-09 17:21:31,033 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.4 pTM=0.776 ipTM=0.407 tol=0.854
2024-12-09 17:24:10,183 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=76.5 pTM=0.774 ipTM=0.416 tol=0.779
2024-12-09 17:26:49,317 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76.4 pTM=0.776 ipTM=0.412 tol=0.506
2024-12-09 17:29:28,470 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=76.6 pTM=0.777 ipTM=0.445 tol=0.5
2024-12-09 17:29:28,473 alphafold2_multimer_v3_model_1_seed_000 took 1385.0s (7 recycles)
2024-12-09 17:32:10,354 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.3 pTM=0.744 ipTM=0.349
2024-12-09 17:34:49,799 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.4 pTM=0.765 ipTM=0.368 tol=2.94
2024-12-09 17:37:29,263 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.5 pTM=0.777 ipTM=0.381 tol=1.1
2024-12-09 17:40:08,658 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.9 pTM=0.777 ipTM=0.386 tol=0.984
2024-12-09 17:42:48,076 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.2 pTM=0.779 ipTM=0.391 tol=0.623
2024-12-09 17:45:27,455 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.2 pTM=0.777 ipTM=0.392 tol=0.522
2024-12-09 17:48:06,841 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.4 pTM=0.781 ipTM=0.401 tol=0.375
2024-12-09 17:48:06,843 alphafold2_multimer_v3_model_2_seed_000 took 1116.0s (6 recycles)
2024-12-09 17:50:48,637 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.9 pTM=0.753 ipTM=0.396
2024-12-09 17:53:27,984 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.1 pTM=0.769 ipTM=0.46 tol=5.68
2024-12-09 17:56:07,351 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.1 pTM=0.77 ipTM=0.419 tol=4.27
2024-12-09 17:58:46,653 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.3 pTM=0.774 ipTM=0.457 tol=1.75
2024-12-09 18:01:25,944 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.4 pTM=0.776 ipTM=0.461 tol=0.641
2024-12-09 18:04:05,225 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.5 pTM=0.772 ipTM=0.458 tol=0.427
2024-12-09 18:04:05,228 alphafold2_multimer_v3_model_3_seed_000 took 956.0s (5 recycles)
2024-12-09 18:06:47,049 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.3 pTM=0.772 ipTM=0.389
2024-12-09 18:09:26,389 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.1 pTM=0.782 ipTM=0.403 tol=4.13
2024-12-09 18:12:05,724 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.6 pTM=0.787 ipTM=0.402 tol=1.4
2024-12-09 18:14:45,071 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.7 pTM=0.785 ipTM=0.4 tol=1.05
2024-12-09 18:17:24,379 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.6 pTM=0.782 ipTM=0.403 tol=0.945
2024-12-09 18:20:03,710 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.7 pTM=0.783 ipTM=0.418 tol=0.669
2024-12-09 18:22:43,072 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.9 pTM=0.785 ipTM=0.431 tol=0.738
2024-12-09 18:25:22,391 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.8 pTM=0.785 ipTM=0.438 tol=0.525
2024-12-09 18:28:01,723 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.8 pTM=0.786 ipTM=0.441 tol=0.589
2024-12-09 18:30:41,075 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.9 pTM=0.787 ipTM=0.443 tol=0.901
2024-12-09 18:33:20,406 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.8 pTM=0.786 ipTM=0.444 tol=1.15
2024-12-09 18:35:59,746 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.9 pTM=0.791 ipTM=0.467 tol=0.536
2024-12-09 18:38:39,128 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=76 pTM=0.79 ipTM=0.465 tol=0.65
2024-12-09 18:41:18,456 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=76 pTM=0.79 ipTM=0.469 tol=0.738
2024-12-09 18:43:57,774 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=76.2 pTM=0.792 ipTM=0.491 tol=0.601
2024-12-09 18:46:37,136 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.4 pTM=0.798 ipTM=0.513 tol=0.559
2024-12-09 18:49:16,460 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76.5 pTM=0.796 ipTM=0.5 tol=0.462
2024-12-09 18:49:16,463 alphafold2_multimer_v3_model_4_seed_000 took 2708.8s (16 recycles)
2024-12-09 18:51:58,303 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.9 pTM=0.756 ipTM=0.369
2024-12-09 18:54:37,671 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.8 pTM=0.763 ipTM=0.383 tol=3.93
2024-12-09 18:57:17,009 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.3 pTM=0.769 ipTM=0.39 tol=1.05
2024-12-09 18:59:56,375 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.8 pTM=0.776 ipTM=0.399 tol=0.988
2024-12-09 19:02:35,713 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.8 pTM=0.774 ipTM=0.393 tol=0.603
2024-12-09 19:05:15,116 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.9 pTM=0.775 ipTM=0.394 tol=0.493
2024-12-09 19:05:15,119 alphafold2_multimer_v3_model_5_seed_000 took 956.2s (5 recycles)
2024-12-09 19:05:17,543 reranking models by 'multimer' metric
2024-12-09 19:05:22,065 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 19:09:14,300 Relaxation took 236.8s
2024-12-09 19:09:14,300 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.5 pTM=0.796 ipTM=0.5
2024-12-09 19:14:13,518 Relaxation took 299.2s
2024-12-09 19:14:13,519 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.5 pTM=0.772 ipTM=0.458
2024-12-09 19:18:07,265 Relaxation took 233.7s
2024-12-09 19:18:07,265 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.6 pTM=0.777 ipTM=0.445
2024-12-09 19:24:44,180 Relaxation took 396.9s
2024-12-09 19:24:44,181 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.4 pTM=0.781 ipTM=0.401
2024-12-09 19:31:42,462 Relaxation took 418.3s
2024-12-09 19:31:42,462 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.9 pTM=0.775 ipTM=0.394
2024-12-09 19:31:47,593 Done