2024-12-09 17:00:16,666 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 17:00:17,104 Running on GPU
2024-12-09 17:00:20,917 Found 6 citations for tools or databases
2024-12-09 17:00:20,917 Query 1/1: UBR3_IFNA8 (length 2077)
2024-12-09 17:00:21,271 Sleeping for 8s. Reason: PENDING
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2024-12-09 17:03:37,191 Sleeping for 5s. Reason: PENDING
2024-12-09 17:03:42,449 Sleeping for 6s. Reason: RUNNING
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2024-12-09 17:04:46,758 Sleeping for 7s. Reason: RUNNING
2024-12-09 17:04:54,011 Sleeping for 5s. Reason: RUNNING
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2024-12-09 17:05:56,770 Setting max_seq=508, max_extra_seq=2048
2024-12-09 17:11:57,064 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.6 pTM=0.706 ipTM=0.194
2024-12-09 17:14:50,685 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.4 pTM=0.755 ipTM=0.601 tol=7.58
2024-12-09 17:17:44,309 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.4 pTM=0.77 ipTM=0.641 tol=1.59
2024-12-09 17:20:37,902 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.4 pTM=0.775 ipTM=0.649 tol=0.917
2024-12-09 17:23:31,550 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.9 pTM=0.785 ipTM=0.669 tol=1.03
2024-12-09 17:26:25,150 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.9 pTM=0.785 ipTM=0.668 tol=0.651
2024-12-09 17:29:18,772 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=78.4 pTM=0.789 ipTM=0.68 tol=0.593
2024-12-09 17:32:12,433 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=78.8 pTM=0.793 ipTM=0.689 tol=0.476
2024-12-09 17:32:12,437 alphafold2_multimer_v3_model_1_seed_000 took 1570.5s (7 recycles)
2024-12-09 17:35:08,879 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.2 pTM=0.726 ipTM=0.314
2024-12-09 17:38:02,823 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.4 pTM=0.746 ipTM=0.356 tol=6.14
2024-12-09 17:40:56,799 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.4 pTM=0.761 ipTM=0.37 tol=1.63
2024-12-09 17:43:50,789 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.1 pTM=0.764 ipTM=0.368 tol=1.25
2024-12-09 17:46:44,678 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.3 pTM=0.763 ipTM=0.359 tol=0.83
2024-12-09 17:49:38,582 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.6 pTM=0.768 ipTM=0.366 tol=0.791
2024-12-09 17:52:32,447 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.6 pTM=0.766 ipTM=0.37 tol=0.568
2024-12-09 17:55:26,376 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.8 pTM=0.768 ipTM=0.378 tol=0.419
2024-12-09 17:55:26,378 alphafold2_multimer_v3_model_2_seed_000 took 1391.5s (7 recycles)
2024-12-09 17:58:22,757 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.4 pTM=0.72 ipTM=0.355
2024-12-09 18:01:16,658 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.6 pTM=0.746 ipTM=0.357 tol=4.04
2024-12-09 18:04:10,533 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.3 pTM=0.773 ipTM=0.568 tol=5.04
2024-12-09 18:07:04,441 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.2 pTM=0.764 ipTM=0.406 tol=2.11
2024-12-09 18:09:58,327 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.2 pTM=0.759 ipTM=0.373 tol=1.88
2024-12-09 18:12:52,199 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.1 pTM=0.762 ipTM=0.393 tol=1.31
2024-12-09 18:15:46,067 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.2 pTM=0.762 ipTM=0.393 tol=1.14
2024-12-09 18:18:39,944 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.1 pTM=0.76 ipTM=0.394 tol=1.19
2024-12-09 18:21:33,850 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.4 pTM=0.765 ipTM=0.388 tol=0.607
2024-12-09 18:24:27,725 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=76.4 pTM=0.764 ipTM=0.398 tol=0.623
2024-12-09 18:27:21,613 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.3 pTM=0.763 ipTM=0.39 tol=0.451
2024-12-09 18:27:21,615 alphafold2_multimer_v3_model_3_seed_000 took 1912.7s (10 recycles)
2024-12-09 18:30:17,968 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.5 pTM=0.75 ipTM=0.346
2024-12-09 18:33:11,825 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.4 pTM=0.768 ipTM=0.369 tol=4.24
2024-12-09 18:36:05,682 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75 pTM=0.776 ipTM=0.375 tol=1.93
2024-12-09 18:38:59,549 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.1 pTM=0.776 ipTM=0.376 tol=0.717
2024-12-09 18:41:53,365 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.1 pTM=0.773 ipTM=0.375 tol=0.914
2024-12-09 18:44:47,179 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.1 pTM=0.774 ipTM=0.368 tol=0.797
2024-12-09 18:47:40,984 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.1 pTM=0.773 ipTM=0.369 tol=0.753
2024-12-09 18:50:34,769 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.1 pTM=0.771 ipTM=0.362 tol=0.566
2024-12-09 18:53:28,600 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.2 pTM=0.773 ipTM=0.365 tol=0.716
2024-12-09 18:56:22,426 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.2 pTM=0.773 ipTM=0.365 tol=0.733
2024-12-09 18:59:16,258 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.1 pTM=0.771 ipTM=0.363 tol=0.676
2024-12-09 19:02:10,070 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.2 pTM=0.773 ipTM=0.361 tol=0.723
2024-12-09 19:05:03,961 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.2 pTM=0.774 ipTM=0.359 tol=0.929
2024-12-09 19:07:57,859 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75.2 pTM=0.774 ipTM=0.368 tol=0.876
2024-12-09 19:10:51,684 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.3 pTM=0.773 ipTM=0.367 tol=0.952
2024-12-09 19:13:45,507 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.4 pTM=0.775 ipTM=0.369 tol=0.406
2024-12-09 19:13:45,510 alphafold2_multimer_v3_model_4_seed_000 took 2781.4s (15 recycles)
2024-12-09 19:16:41,900 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.4 pTM=0.719 ipTM=0.317
2024-12-09 19:19:35,835 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=75 pTM=0.745 ipTM=0.346 tol=4.54
2024-12-09 19:22:29,779 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.4 pTM=0.755 ipTM=0.33 tol=1.8
2024-12-09 19:25:23,632 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.7 pTM=0.762 ipTM=0.359 tol=0.852
2024-12-09 19:28:17,561 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.8 pTM=0.759 ipTM=0.332 tol=0.931
2024-12-09 19:31:11,525 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76 pTM=0.766 ipTM=0.354 tol=0.675
2024-12-09 19:34:05,426 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.1 pTM=0.762 ipTM=0.336 tol=0.77
2024-12-09 19:36:59,332 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76 pTM=0.762 ipTM=0.342 tol=1.24
2024-12-09 19:39:53,256 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.1 pTM=0.765 ipTM=0.341 tol=1.32
2024-12-09 19:42:47,166 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.2 pTM=0.767 ipTM=0.362 tol=1.06
2024-12-09 19:45:41,114 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.1 pTM=0.767 ipTM=0.339 tol=0.652
2024-12-09 19:48:35,017 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.1 pTM=0.763 ipTM=0.346 tol=0.556
2024-12-09 19:51:28,948 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=75.9 pTM=0.764 ipTM=0.334 tol=0.715
2024-12-09 19:54:22,876 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76.2 pTM=0.765 ipTM=0.348 tol=0.584
2024-12-09 19:57:16,728 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=76.2 pTM=0.765 ipTM=0.353 tol=0.795
2024-12-09 20:00:10,597 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=76.2 pTM=0.766 ipTM=0.362 tol=1.13
2024-12-09 20:03:04,501 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=75.9 pTM=0.763 ipTM=0.329 tol=0.76
2024-12-09 20:05:58,378 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=75.8 pTM=0.761 ipTM=0.342 tol=0.573
2024-12-09 20:08:52,310 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=75.9 pTM=0.764 ipTM=0.336 tol=1.09
2024-12-09 20:11:46,233 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=75.9 pTM=0.762 ipTM=0.334 tol=1.1
2024-12-09 20:14:40,168 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=76 pTM=0.764 ipTM=0.345 tol=1.14
2024-12-09 20:17:34,076 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=75.9 pTM=0.765 ipTM=0.353 tol=0.521
2024-12-09 20:20:27,977 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=75.8 pTM=0.76 ipTM=0.331 tol=1.47
2024-12-09 20:23:21,870 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=75.9 pTM=0.765 ipTM=0.344 tol=0.707
2024-12-09 20:26:15,790 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=75.9 pTM=0.763 ipTM=0.336 tol=0.552
2024-12-09 20:29:09,684 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=75.8 pTM=0.758 ipTM=0.324 tol=0.83
2024-12-09 20:32:03,614 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=75.8 pTM=0.763 ipTM=0.334 tol=0.767
2024-12-09 20:34:57,537 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=75.9 pTM=0.765 ipTM=0.344 tol=0.604
2024-12-09 20:37:51,410 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=75.9 pTM=0.76 ipTM=0.345 tol=0.685
2024-12-09 20:40:45,355 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=76 pTM=0.765 ipTM=0.353 tol=0.368
2024-12-09 20:40:45,358 alphafold2_multimer_v3_model_5_seed_000 took 5217.3s (29 recycles)
2024-12-09 20:40:47,956 reranking models by 'multimer' metric
2024-12-09 20:40:50,291 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 20:42:51,931 Relaxation took 124.0s
2024-12-09 20:42:51,931 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.8 pTM=0.793 ipTM=0.689
2024-12-09 20:46:00,222 Relaxation took 188.3s
2024-12-09 20:46:00,223 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.3 pTM=0.763 ipTM=0.39
2024-12-09 20:52:55,781 Relaxation took 415.6s
2024-12-09 20:52:55,781 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.8 pTM=0.768 ipTM=0.378
2024-12-09 21:01:00,552 Relaxation took 484.8s
2024-12-09 21:01:00,553 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.4 pTM=0.775 ipTM=0.369
2024-12-09 21:04:16,015 Relaxation took 195.5s
2024-12-09 21:04:16,015 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76 pTM=0.765 ipTM=0.353
2024-12-09 21:04:21,682 Done