2024-12-09 19:19:34,012 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 19:19:34,325 Running on GPU
2024-12-09 19:19:37,848 Found 6 citations for tools or databases
2024-12-09 19:19:37,849 Query 1/1: UHRF1_PTGES3 (length 953)
2024-12-09 19:19:38,163 Sleeping for 6s. Reason: PENDING
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2024-12-09 19:22:31,137 Sleeping for 6s. Reason: PENDING
2024-12-09 19:22:37,392 Sleeping for 7s. Reason: RUNNING
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2024-12-09 19:22:51,906 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:23:00,163 Sleeping for 6s. Reason: RUNNING
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2024-12-09 19:23:26,935 Sleeping for 5s. Reason: RUNNING
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2024-12-09 19:23:41,456 Sleeping for 6s. Reason: RUNNING
2024-12-09 19:23:47,711 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:23:55,975 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:24:04,236 Sleeping for 9s. Reason: RUNNING
2024-12-09 19:24:13,496 Sleeping for 9s. Reason: RUNNING
2024-12-09 19:24:22,755 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:24:30,020 Sleeping for 9s. Reason: RUNNING
2024-12-09 19:24:44,551 Setting max_seq=508, max_extra_seq=2048
2024-12-09 19:27:49,768 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.8 pTM=0.516 ipTM=0.251
2024-12-09 19:28:09,958 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73 pTM=0.509 ipTM=0.201 tol=9.91
2024-12-09 19:28:30,208 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.8 pTM=0.503 ipTM=0.207 tol=2.91
2024-12-09 19:28:50,467 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.4 pTM=0.525 ipTM=0.275 tol=3
2024-12-09 19:29:10,773 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.6 pTM=0.532 ipTM=0.233 tol=1.73
2024-12-09 19:29:31,058 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.2 pTM=0.532 ipTM=0.23 tol=0.776
2024-12-09 19:29:51,374 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.3 pTM=0.533 ipTM=0.24 tol=0.725
2024-12-09 19:30:11,703 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.1 pTM=0.535 ipTM=0.245 tol=0.601
2024-12-09 19:30:32,043 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.9 pTM=0.545 ipTM=0.257 tol=0.74
2024-12-09 19:30:52,356 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.1 pTM=0.539 ipTM=0.246 tol=0.695
2024-12-09 19:31:12,694 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=75.6 pTM=0.547 ipTM=0.273 tol=0.96
2024-12-09 19:31:33,040 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76.4 pTM=0.561 ipTM=0.256 tol=0.904
2024-12-09 19:31:53,380 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=75.7 pTM=0.548 ipTM=0.246 tol=0.448
2024-12-09 19:31:53,381 alphafold2_multimer_v3_model_1_seed_000 took 423.7s (12 recycles)
2024-12-09 19:32:14,337 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.8 pTM=0.526 ipTM=0.24
2024-12-09 19:32:34,724 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.2 pTM=0.541 ipTM=0.24 tol=9.09
2024-12-09 19:32:55,114 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.3 pTM=0.541 ipTM=0.247 tol=2.64
2024-12-09 19:33:15,482 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.8 pTM=0.55 ipTM=0.264 tol=1.17
2024-12-09 19:33:35,848 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.3 pTM=0.551 ipTM=0.263 tol=0.794
2024-12-09 19:33:56,212 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.3 pTM=0.555 ipTM=0.261 tol=0.819
2024-12-09 19:34:16,567 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.2 pTM=0.553 ipTM=0.268 tol=0.591
2024-12-09 19:34:36,936 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.5 pTM=0.555 ipTM=0.272 tol=0.814
2024-12-09 19:34:57,299 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=76.7 pTM=0.56 ipTM=0.287 tol=0.806
2024-12-09 19:35:17,667 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=76.4 pTM=0.554 ipTM=0.273 tol=0.41
2024-12-09 19:35:17,668 alphafold2_multimer_v3_model_2_seed_000 took 203.7s (9 recycles)
2024-12-09 19:35:38,674 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.4 pTM=0.512 ipTM=0.207
2024-12-09 19:35:59,110 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73.8 pTM=0.505 ipTM=0.188 tol=9.81
2024-12-09 19:36:19,522 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.1 pTM=0.49 ipTM=0.198 tol=4.91
2024-12-09 19:36:39,921 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.5 pTM=0.499 ipTM=0.219 tol=2.91
2024-12-09 19:37:00,327 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.6 pTM=0.495 ipTM=0.221 tol=0.646
2024-12-09 19:37:20,733 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.9 pTM=0.501 ipTM=0.232 tol=0.47
2024-12-09 19:37:20,734 alphafold2_multimer_v3_model_3_seed_000 took 122.5s (5 recycles)
2024-12-09 19:37:41,702 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=69.4 pTM=0.535 ipTM=0.59
2024-12-09 19:38:02,119 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=69.8 pTM=0.478 ipTM=0.196 tol=12
2024-12-09 19:38:22,527 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.2 pTM=0.47 ipTM=0.204 tol=7.77
2024-12-09 19:38:42,907 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=71.8 pTM=0.477 ipTM=0.212 tol=2.17
2024-12-09 19:39:03,284 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=70.9 pTM=0.468 ipTM=0.21 tol=1.34
2024-12-09 19:39:23,669 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.4 pTM=0.475 ipTM=0.216 tol=2.15
2024-12-09 19:39:44,053 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.7 pTM=0.475 ipTM=0.219 tol=2.15
2024-12-09 19:40:04,433 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=72.2 pTM=0.484 ipTM=0.226 tol=2.41
2024-12-09 19:40:24,801 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=71.9 pTM=0.474 ipTM=0.219 tol=1.75
2024-12-09 19:40:45,177 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=71.8 pTM=0.479 ipTM=0.222 tol=0.703
2024-12-09 19:41:05,548 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=72.2 pTM=0.483 ipTM=0.222 tol=0.753
2024-12-09 19:41:25,920 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=72.6 pTM=0.489 ipTM=0.232 tol=1.07
2024-12-09 19:41:46,293 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=72.8 pTM=0.489 ipTM=0.231 tol=0.697
2024-12-09 19:42:06,662 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=72.6 pTM=0.49 ipTM=0.231 tol=1.11
2024-12-09 19:42:27,027 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.1 pTM=0.495 ipTM=0.232 tol=0.766
2024-12-09 19:42:47,421 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.1 pTM=0.493 ipTM=0.234 tol=0.535
2024-12-09 19:43:07,824 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=72.8 pTM=0.489 ipTM=0.228 tol=0.514
2024-12-09 19:43:28,184 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=72.9 pTM=0.493 ipTM=0.227 tol=0.778
2024-12-09 19:43:48,549 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.8 pTM=0.488 ipTM=0.217 tol=0.594
2024-12-09 19:44:08,892 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.2 pTM=0.497 ipTM=0.229 tol=0.687
2024-12-09 19:44:29,238 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=72.9 pTM=0.495 ipTM=0.236 tol=1.2
2024-12-09 19:44:49,587 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.7 pTM=0.485 ipTM=0.225 tol=0.861
2024-12-09 19:45:09,938 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.6 pTM=0.488 ipTM=0.222 tol=0.845
2024-12-09 19:45:30,298 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=72.2 pTM=0.483 ipTM=0.216 tol=1.56
2024-12-09 19:45:50,643 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=72 pTM=0.484 ipTM=0.22 tol=1.28
2024-12-09 19:46:11,008 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=72.3 pTM=0.486 ipTM=0.225 tol=1.24
2024-12-09 19:46:31,370 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=72.6 pTM=0.48 ipTM=0.219 tol=1.66
2024-12-09 19:46:51,725 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=72.2 pTM=0.48 ipTM=0.217 tol=1.31
2024-12-09 19:47:12,078 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.6 pTM=0.488 ipTM=0.231 tol=0.924
2024-12-09 19:47:32,434 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=72.8 pTM=0.49 ipTM=0.232 tol=0.613
2024-12-09 19:47:52,783 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=72.9 pTM=0.494 ipTM=0.234 tol=1.02
2024-12-09 19:47:52,784 alphafold2_multimer_v3_model_4_seed_000 took 631.5s (30 recycles)
2024-12-09 19:48:13,753 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=70.2 pTM=0.503 ipTM=0.414
2024-12-09 19:48:34,159 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.5 pTM=0.493 ipTM=0.443 tol=7.9
2024-12-09 19:48:54,563 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=70.7 pTM=0.478 ipTM=0.223 tol=2.9
2024-12-09 19:49:15,003 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.2 pTM=0.479 ipTM=0.192 tol=3.59
2024-12-09 19:49:35,463 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.4 pTM=0.472 ipTM=0.184 tol=1.92
2024-12-09 19:49:55,898 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.9 pTM=0.471 ipTM=0.169 tol=2.21
2024-12-09 19:50:16,331 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=71.1 pTM=0.464 ipTM=0.184 tol=2.57
2024-12-09 19:50:36,769 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=71.6 pTM=0.469 ipTM=0.181 tol=3.44
2024-12-09 19:50:57,200 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.3 pTM=0.465 ipTM=0.178 tol=2.84
2024-12-09 19:51:17,628 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=71.6 pTM=0.468 ipTM=0.18 tol=5.22
2024-12-09 19:51:38,041 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=71.8 pTM=0.47 ipTM=0.188 tol=4.24
2024-12-09 19:51:58,471 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.4 pTM=0.475 ipTM=0.188 tol=3.44
2024-12-09 19:52:18,872 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.6 pTM=0.471 ipTM=0.194 tol=2.11
2024-12-09 19:52:39,284 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=71.3 pTM=0.473 ipTM=0.198 tol=1.67
2024-12-09 19:52:59,694 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.4 pTM=0.476 ipTM=0.203 tol=1.58
2024-12-09 19:53:20,092 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.6 pTM=0.475 ipTM=0.209 tol=1.26
2024-12-09 19:53:40,490 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.9 pTM=0.476 ipTM=0.203 tol=2.47
2024-12-09 19:54:00,895 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=72.4 pTM=0.484 ipTM=0.206 tol=2.35
2024-12-09 19:54:21,300 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=72.5 pTM=0.479 ipTM=0.205 tol=1.37
2024-12-09 19:54:41,698 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=72.6 pTM=0.487 ipTM=0.213 tol=2.5
2024-12-09 19:55:02,086 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=72.3 pTM=0.481 ipTM=0.212 tol=0.908
2024-12-09 19:55:22,482 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=72.8 pTM=0.483 ipTM=0.209 tol=2.54
2024-12-09 19:55:42,907 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=73 pTM=0.485 ipTM=0.213 tol=1.48
2024-12-09 19:56:03,329 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=73 pTM=0.487 ipTM=0.212 tol=1.77
2024-12-09 19:56:23,729 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=72.4 pTM=0.484 ipTM=0.207 tol=0.592
2024-12-09 19:56:44,123 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72.5 pTM=0.485 ipTM=0.213 tol=1.52
2024-12-09 19:57:04,509 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=73.3 pTM=0.488 ipTM=0.224 tol=1.87
2024-12-09 19:57:24,905 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=72.9 pTM=0.484 ipTM=0.224 tol=1.59
2024-12-09 19:57:45,295 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72.9 pTM=0.485 ipTM=0.217 tol=1.02
2024-12-09 19:58:05,691 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72.9 pTM=0.487 ipTM=0.222 tol=2.91
2024-12-09 19:58:26,088 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.8 pTM=0.487 ipTM=0.234 tol=2.89
2024-12-09 19:58:26,089 alphafold2_multimer_v3_model_5_seed_000 took 632.7s (30 recycles)
2024-12-09 19:58:26,657 reranking models by 'multimer' metric
2024-12-09 19:58:27,600 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 19:59:23,196 Relaxation took 56.5s
2024-12-09 19:59:23,197 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.4 pTM=0.554 ipTM=0.273
2024-12-09 20:00:16,516 Relaxation took 53.3s
2024-12-09 20:00:16,517 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.7 pTM=0.548 ipTM=0.246
2024-12-09 20:00:54,026 Relaxation took 37.5s
2024-12-09 20:00:54,026 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=72.9 pTM=0.494 ipTM=0.234
2024-12-09 20:01:54,256 Relaxation took 60.2s
2024-12-09 20:01:54,256 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.9 pTM=0.501 ipTM=0.232
2024-12-09 20:02:37,330 Relaxation took 43.1s
2024-12-09 20:02:37,330 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.8 pTM=0.487 ipTM=0.234
2024-12-09 20:02:39,099 Done