2024-12-09 19:51:21,526 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 19:51:21,820 Running on GPU
2024-12-09 19:51:25,621 Found 6 citations for tools or databases
2024-12-09 19:51:25,622 Query 1/1: VHL_BMP2 (length 609)
2024-12-09 19:51:25,915 Sleeping for 8s. Reason: PENDING
2024-12-09 19:51:34,179 Sleeping for 10s. Reason: PENDING
2024-12-09 19:51:44,437 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:51:51,704 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:51:58,960 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:52:06,209 Sleeping for 5s. Reason: RUNNING
2024-12-09 19:52:11,470 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:52:18,724 Sleeping for 7s. Reason: RUNNING
2024-12-09 19:52:25,984 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:52:34,237 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:52:42,497 Sleeping for 6s. Reason: RUNNING
2024-12-09 19:52:48,747 Sleeping for 9s. Reason: RUNNING
2024-12-09 19:52:58,006 Sleeping for 5s. Reason: RUNNING
2024-12-09 19:53:03,266 Sleeping for 10s. Reason: RUNNING
2024-12-09 19:53:13,537 Sleeping for 5s. Reason: RUNNING
2024-12-09 19:53:18,787 Sleeping for 10s. Reason: RUNNING
2024-12-09 19:53:30,658 Sleeping for 8s. Reason: PENDING
2024-12-09 19:53:38,918 Sleeping for 5s. Reason: RUNNING
2024-12-09 19:53:44,179 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:53:52,451 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:54:00,715 Sleeping for 8s. Reason: RUNNING
2024-12-09 19:54:08,974 Sleeping for 9s. Reason: RUNNING
2024-12-09 19:54:21,602 Setting max_seq=508, max_extra_seq=2048
2024-12-09 19:57:15,922 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.9 pTM=0.514 ipTM=0.272
2024-12-09 19:57:23,383 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.4 pTM=0.524 ipTM=0.22 tol=5.43
2024-12-09 19:57:30,856 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.8 pTM=0.524 ipTM=0.131 tol=4.73
2024-12-09 19:57:38,331 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.4 pTM=0.52 ipTM=0.119 tol=3.85
2024-12-09 19:57:45,820 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=67.9 pTM=0.506 ipTM=0.11 tol=3.92
2024-12-09 19:57:53,315 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=67.8 pTM=0.508 ipTM=0.11 tol=4.5
2024-12-09 19:58:00,821 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=67.1 pTM=0.501 ipTM=0.11 tol=2.14
2024-12-09 19:58:08,319 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=67.9 pTM=0.503 ipTM=0.108 tol=2.47
2024-12-09 19:58:15,827 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=67.2 pTM=0.49 ipTM=0.105 tol=3.48
2024-12-09 19:58:23,348 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=67.4 pTM=0.482 ipTM=0.106 tol=2.66
2024-12-09 19:58:30,857 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=67.2 pTM=0.479 ipTM=0.105 tol=10.7
2024-12-09 19:58:38,371 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=66.6 pTM=0.466 ipTM=0.109 tol=1.84
2024-12-09 19:58:45,900 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.7 pTM=0.453 ipTM=0.108 tol=2.32
2024-12-09 19:58:53,431 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.8 pTM=0.448 ipTM=0.114 tol=1.75
2024-12-09 19:59:00,963 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=65.9 pTM=0.44 ipTM=0.113 tol=1.9
2024-12-09 19:59:08,483 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.6 pTM=0.441 ipTM=0.112 tol=1.78
2024-12-09 19:59:16,022 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.4 pTM=0.434 ipTM=0.112 tol=1.86
2024-12-09 19:59:23,562 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=66.1 pTM=0.433 ipTM=0.12 tol=3.32
2024-12-09 19:59:31,094 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=66 pTM=0.434 ipTM=0.117 tol=2.73
2024-12-09 19:59:38,637 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=66 pTM=0.431 ipTM=0.118 tol=2.92
2024-12-09 19:59:46,177 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=65.3 pTM=0.432 ipTM=0.12 tol=1.85
2024-12-09 19:59:53,718 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=65.1 pTM=0.433 ipTM=0.129 tol=4.78
2024-12-09 20:00:01,250 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=65.3 pTM=0.43 ipTM=0.122 tol=2.3
2024-12-09 20:00:08,789 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=65.2 pTM=0.428 ipTM=0.121 tol=1.33
2024-12-09 20:00:16,328 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=65 pTM=0.427 ipTM=0.121 tol=1.91
2024-12-09 20:00:23,864 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=64.8 pTM=0.43 ipTM=0.121 tol=1.63
2024-12-09 20:00:31,410 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65 pTM=0.426 ipTM=0.122 tol=1.83
2024-12-09 20:00:38,951 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.1 pTM=0.431 ipTM=0.128 tol=3.51
2024-12-09 20:00:46,493 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=65.1 pTM=0.423 ipTM=0.124 tol=3.29
2024-12-09 20:00:54,035 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=65.1 pTM=0.429 ipTM=0.12 tol=1.56
2024-12-09 20:01:01,579 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=65 pTM=0.424 ipTM=0.119 tol=2.12
2024-12-09 20:01:01,579 alphafold2_multimer_v3_model_1_seed_000 took 394.5s (30 recycles)
2024-12-09 20:01:09,370 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.6 pTM=0.507 ipTM=0.163
2024-12-09 20:01:16,913 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=69.7 pTM=0.535 ipTM=0.329 tol=16.1
2024-12-09 20:01:24,452 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.7 pTM=0.553 ipTM=0.295 tol=6.94
2024-12-09 20:01:32,001 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72 pTM=0.555 ipTM=0.244 tol=2.81
2024-12-09 20:01:39,546 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.7 pTM=0.544 ipTM=0.207 tol=2
2024-12-09 20:01:47,096 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.1 pTM=0.547 ipTM=0.184 tol=2.63
2024-12-09 20:01:54,647 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.8 pTM=0.535 ipTM=0.147 tol=2.33
2024-12-09 20:02:02,199 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.3 pTM=0.533 ipTM=0.13 tol=2.78
2024-12-09 20:02:09,755 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=70.5 pTM=0.525 ipTM=0.108 tol=5.61
2024-12-09 20:02:17,315 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=70.5 pTM=0.529 ipTM=0.126 tol=5.28
2024-12-09 20:02:24,881 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.4 pTM=0.527 ipTM=0.106 tol=4.02
2024-12-09 20:02:32,458 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=69.9 pTM=0.525 ipTM=0.105 tol=4.29
2024-12-09 20:02:40,027 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=69.2 pTM=0.526 ipTM=0.102 tol=4.33
2024-12-09 20:02:47,589 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=69.2 pTM=0.526 ipTM=0.105 tol=6.58
2024-12-09 20:02:55,137 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=69.1 pTM=0.528 ipTM=0.107 tol=4.63
2024-12-09 20:03:02,699 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=69 pTM=0.529 ipTM=0.108 tol=3.59
2024-12-09 20:03:10,272 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=69 pTM=0.527 ipTM=0.107 tol=4.6
2024-12-09 20:03:17,842 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=68.8 pTM=0.526 ipTM=0.107 tol=3.08
2024-12-09 20:03:25,414 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=68.9 pTM=0.523 ipTM=0.103 tol=5.25
2024-12-09 20:03:32,983 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=68.9 pTM=0.527 ipTM=0.107 tol=3.55
2024-12-09 20:03:40,550 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=68.6 pTM=0.525 ipTM=0.109 tol=8.59
2024-12-09 20:03:48,108 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=68.9 pTM=0.527 ipTM=0.112 tol=2.65
2024-12-09 20:03:55,669 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=68.9 pTM=0.525 ipTM=0.111 tol=2.93
2024-12-09 20:04:03,234 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=68.9 pTM=0.528 ipTM=0.112 tol=3.04
2024-12-09 20:04:10,802 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=68.6 pTM=0.526 ipTM=0.112 tol=3.19
2024-12-09 20:04:18,365 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=68.4 pTM=0.525 ipTM=0.109 tol=2.54
2024-12-09 20:04:25,932 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=68.8 pTM=0.524 ipTM=0.105 tol=2.47
2024-12-09 20:04:33,486 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=68.6 pTM=0.526 ipTM=0.105 tol=1.79
2024-12-09 20:04:41,044 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=68.4 pTM=0.526 ipTM=0.106 tol=1.8
2024-12-09 20:04:48,599 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=68.5 pTM=0.531 ipTM=0.111 tol=3.92
2024-12-09 20:04:56,161 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=68.8 pTM=0.53 ipTM=0.113 tol=3.23
2024-12-09 20:04:56,161 alphafold2_multimer_v3_model_2_seed_000 took 234.3s (30 recycles)
2024-12-09 20:05:03,960 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68 pTM=0.506 ipTM=0.276
2024-12-09 20:05:11,543 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.8 pTM=0.487 ipTM=0.118 tol=10.3
2024-12-09 20:05:19,111 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68 pTM=0.485 ipTM=0.121 tol=10.4
2024-12-09 20:05:26,684 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.4 pTM=0.471 ipTM=0.106 tol=6.09
2024-12-09 20:05:34,259 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=67.1 pTM=0.478 ipTM=0.121 tol=5.02
2024-12-09 20:05:41,826 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67 pTM=0.485 ipTM=0.121 tol=10.2
2024-12-09 20:05:49,377 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.2 pTM=0.492 ipTM=0.127 tol=10.4
2024-12-09 20:05:56,920 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.9 pTM=0.493 ipTM=0.133 tol=8.09
2024-12-09 20:06:04,464 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.1 pTM=0.491 ipTM=0.157 tol=7.62
2024-12-09 20:06:12,011 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.4 pTM=0.488 ipTM=0.139 tol=4.99
2024-12-09 20:06:19,546 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.9 pTM=0.501 ipTM=0.196 tol=3.91
2024-12-09 20:06:27,084 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.8 pTM=0.499 ipTM=0.157 tol=1.63
2024-12-09 20:06:34,620 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=66.9 pTM=0.505 ipTM=0.193 tol=2.19
2024-12-09 20:06:42,156 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66.8 pTM=0.506 ipTM=0.205 tol=1.37
2024-12-09 20:06:49,700 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66.7 pTM=0.505 ipTM=0.204 tol=1.42
2024-12-09 20:06:57,234 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.2 pTM=0.516 ipTM=0.251 tol=2.23
2024-12-09 20:07:04,784 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=66.2 pTM=0.49 ipTM=0.119 tol=3.1
2024-12-09 20:07:12,328 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67.1 pTM=0.512 ipTM=0.221 tol=3.86
2024-12-09 20:07:19,872 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67.1 pTM=0.513 ipTM=0.241 tol=2.58
2024-12-09 20:07:27,422 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=66.8 pTM=0.497 ipTM=0.138 tol=1.8
2024-12-09 20:07:34,952 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.4 pTM=0.501 ipTM=0.193 tol=4.47
2024-12-09 20:07:42,494 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=66.9 pTM=0.509 ipTM=0.228 tol=1.89
2024-12-09 20:07:50,033 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=67.1 pTM=0.506 ipTM=0.209 tol=2.95
2024-12-09 20:07:57,580 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.8 pTM=0.496 ipTM=0.159 tol=2.87
2024-12-09 20:08:05,123 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=66.9 pTM=0.508 ipTM=0.246 tol=2.4
2024-12-09 20:08:12,659 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67 pTM=0.509 ipTM=0.241 tol=2.4
2024-12-09 20:08:20,185 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.1 pTM=0.511 ipTM=0.215 tol=2.16
2024-12-09 20:08:27,719 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.8 pTM=0.504 ipTM=0.181 tol=0.876
2024-12-09 20:08:35,263 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67 pTM=0.506 ipTM=0.219 tol=2.66
2024-12-09 20:08:42,791 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.2 pTM=0.514 ipTM=0.222 tol=1.79
2024-12-09 20:08:50,326 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=67.1 pTM=0.508 ipTM=0.239 tol=1.38
2024-12-09 20:08:50,327 alphafold2_multimer_v3_model_3_seed_000 took 233.9s (30 recycles)
2024-12-09 20:08:58,105 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.8 pTM=0.514 ipTM=0.149
2024-12-09 20:09:05,647 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=68.8 pTM=0.511 ipTM=0.131 tol=8.9
2024-12-09 20:09:13,192 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.9 pTM=0.498 ipTM=0.116 tol=3.85
2024-12-09 20:09:20,740 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.3 pTM=0.49 ipTM=0.106 tol=6.31
2024-12-09 20:09:28,293 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=66.6 pTM=0.503 ipTM=0.124 tol=10.9
2024-12-09 20:09:35,841 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=67 pTM=0.518 ipTM=0.13 tol=6.84
2024-12-09 20:09:43,381 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.7 pTM=0.523 ipTM=0.134 tol=7.71
2024-12-09 20:09:50,920 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=67.5 pTM=0.521 ipTM=0.125 tol=2.8
2024-12-09 20:09:58,463 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=67.3 pTM=0.526 ipTM=0.133 tol=3.28
2024-12-09 20:10:06,008 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=67.3 pTM=0.529 ipTM=0.13 tol=2.53
2024-12-09 20:10:13,552 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=67.9 pTM=0.527 ipTM=0.121 tol=2.88
2024-12-09 20:10:21,088 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=67.6 pTM=0.532 ipTM=0.123 tol=2.23
2024-12-09 20:10:28,636 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=67.9 pTM=0.534 ipTM=0.124 tol=3.46
2024-12-09 20:10:36,189 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=67.8 pTM=0.531 ipTM=0.119 tol=1.54
2024-12-09 20:10:43,735 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=67.4 pTM=0.532 ipTM=0.125 tol=1.93
2024-12-09 20:10:51,272 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=67.6 pTM=0.538 ipTM=0.133 tol=2.37
2024-12-09 20:10:58,823 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=67.9 pTM=0.533 ipTM=0.127 tol=2.32
2024-12-09 20:11:06,371 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=68 pTM=0.534 ipTM=0.124 tol=2.25
2024-12-09 20:11:13,915 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=67.5 pTM=0.535 ipTM=0.13 tol=1.88
2024-12-09 20:11:21,465 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=67.8 pTM=0.537 ipTM=0.13 tol=1.51
2024-12-09 20:11:29,014 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=67.8 pTM=0.531 ipTM=0.122 tol=1.3
2024-12-09 20:11:36,558 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=67.6 pTM=0.534 ipTM=0.127 tol=1.07
2024-12-09 20:11:44,105 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=67.6 pTM=0.53 ipTM=0.127 tol=1.48
2024-12-09 20:11:51,654 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=67.9 pTM=0.53 ipTM=0.121 tol=2.99
2024-12-09 20:11:59,199 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=67.4 pTM=0.531 ipTM=0.123 tol=2.68
2024-12-09 20:12:06,747 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=67.9 pTM=0.533 ipTM=0.127 tol=2.1
2024-12-09 20:12:14,300 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=67.9 pTM=0.532 ipTM=0.124 tol=1.52
2024-12-09 20:12:21,843 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=67.7 pTM=0.533 ipTM=0.123 tol=1.29
2024-12-09 20:12:29,396 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=67.5 pTM=0.53 ipTM=0.122 tol=1.82
2024-12-09 20:12:36,947 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=67.7 pTM=0.53 ipTM=0.118 tol=2.02
2024-12-09 20:12:44,494 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=67.7 pTM=0.533 ipTM=0.129 tol=0.936
2024-12-09 20:12:44,495 alphafold2_multimer_v3_model_4_seed_000 took 233.9s (30 recycles)
2024-12-09 20:12:52,289 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.8 pTM=0.547 ipTM=0.237
2024-12-09 20:12:59,850 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.6 pTM=0.538 ipTM=0.456 tol=22.9
2024-12-09 20:13:07,420 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.9 pTM=0.491 ipTM=0.142 tol=4.7
2024-12-09 20:13:15,010 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.4 pTM=0.48 ipTM=0.119 tol=6.34
2024-12-09 20:13:22,593 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=67.1 pTM=0.482 ipTM=0.117 tol=6.23
2024-12-09 20:13:30,184 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=66.2 pTM=0.479 ipTM=0.11 tol=9.2
2024-12-09 20:13:37,761 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.6 pTM=0.477 ipTM=0.111 tol=12.3
2024-12-09 20:13:45,333 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.9 pTM=0.479 ipTM=0.117 tol=4.15
2024-12-09 20:13:52,908 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.8 pTM=0.472 ipTM=0.11 tol=3.5
2024-12-09 20:14:00,480 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=67.1 pTM=0.477 ipTM=0.166 tol=9.76
2024-12-09 20:14:08,053 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=66.2 pTM=0.467 ipTM=0.119 tol=4.31
2024-12-09 20:14:15,613 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=66.4 pTM=0.462 ipTM=0.117 tol=4.13
2024-12-09 20:14:23,170 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.4 pTM=0.462 ipTM=0.125 tol=2.11
2024-12-09 20:14:30,718 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=66.9 pTM=0.457 ipTM=0.117 tol=2.31
2024-12-09 20:14:38,262 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=66.2 pTM=0.45 ipTM=0.121 tol=2.31
2024-12-09 20:14:45,805 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=66.8 pTM=0.451 ipTM=0.117 tol=2.32
2024-12-09 20:14:53,359 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=66.4 pTM=0.449 ipTM=0.123 tol=1.31
2024-12-09 20:15:00,898 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=66.7 pTM=0.452 ipTM=0.12 tol=1.33
2024-12-09 20:15:08,439 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=67.2 pTM=0.454 ipTM=0.176 tol=3.26
2024-12-09 20:15:15,991 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=66.1 pTM=0.45 ipTM=0.119 tol=4.41
2024-12-09 20:15:23,548 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=66.6 pTM=0.45 ipTM=0.122 tol=2.97
2024-12-09 20:15:31,096 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=66.1 pTM=0.448 ipTM=0.122 tol=2.26
2024-12-09 20:15:38,647 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=66.4 pTM=0.447 ipTM=0.119 tol=2.24
2024-12-09 20:15:46,205 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=65.6 pTM=0.444 ipTM=0.119 tol=4.53
2024-12-09 20:15:53,754 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=65.2 pTM=0.44 ipTM=0.119 tol=5.05
2024-12-09 20:16:01,317 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=66.1 pTM=0.448 ipTM=0.119 tol=8.16
2024-12-09 20:16:08,868 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=66.2 pTM=0.452 ipTM=0.121 tol=2.27
2024-12-09 20:16:16,421 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=66.1 pTM=0.448 ipTM=0.115 tol=1.95
2024-12-09 20:16:23,977 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.8 pTM=0.446 ipTM=0.121 tol=2.61
2024-12-09 20:16:31,535 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=66.1 pTM=0.447 ipTM=0.115 tol=3.02
2024-12-09 20:16:39,088 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=65.6 pTM=0.441 ipTM=0.119 tol=2.77
2024-12-09 20:16:39,088 alphafold2_multimer_v3_model_5_seed_000 took 234.4s (30 recycles)
2024-12-09 20:16:39,336 reranking models by 'multimer' metric
2024-12-09 20:16:42,255 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 20:17:22,928 Relaxation took 43.6s
2024-12-09 20:17:22,929 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.1 pTM=0.508 ipTM=0.239
2024-12-09 20:18:10,393 Relaxation took 47.5s
2024-12-09 20:18:10,393 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=67.7 pTM=0.533 ipTM=0.129
2024-12-09 20:18:55,531 Relaxation took 45.1s
2024-12-09 20:18:55,531 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=68.8 pTM=0.53 ipTM=0.113
2024-12-09 20:19:22,041 Relaxation took 26.5s
2024-12-09 20:19:22,041 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=65.6 pTM=0.441 ipTM=0.119
2024-12-09 20:20:02,766 Relaxation took 40.7s
2024-12-09 20:20:02,766 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=65 pTM=0.424 ipTM=0.119
2024-12-09 20:20:03,961 Done