2024-12-09 20:03:17,188 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 20:03:17,511 Running on GPU
2024-12-09 20:03:21,478 Found 6 citations for tools or databases
2024-12-09 20:03:21,478 Query 1/1: VHL_OXT (length 338)
2024-12-09 20:03:21,781 Sleeping for 9s. Reason: PENDING
2024-12-09 20:03:31,052 Sleeping for 7s. Reason: RUNNING
2024-12-09 20:03:38,317 Sleeping for 5s. Reason: RUNNING
2024-12-09 20:03:43,929 Sleeping for 6s. Reason: RUNNING
2024-12-09 20:03:50,202 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:03:58,466 Sleeping for 10s. Reason: RUNNING
2024-12-09 20:04:09,875 Sleeping for 9s. Reason: PENDING
2024-12-09 20:04:19,149 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:04:27,407 Sleeping for 9s. Reason: RUNNING
2024-12-09 20:04:37,911 Setting max_seq=508, max_extra_seq=2048
2024-12-09 20:07:13,564 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=61.4 pTM=0.519 ipTM=0.266
2024-12-09 20:07:16,895 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.2 pTM=0.492 ipTM=0.24 tol=7.71
2024-12-09 20:07:20,217 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=63.5 pTM=0.466 ipTM=0.224 tol=3.74
2024-12-09 20:07:23,535 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=62.6 pTM=0.454 ipTM=0.201 tol=3.05
2024-12-09 20:07:26,849 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=63 pTM=0.457 ipTM=0.203 tol=2.08
2024-12-09 20:07:30,167 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=63.2 pTM=0.461 ipTM=0.192 tol=2
2024-12-09 20:07:33,486 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=64 pTM=0.47 ipTM=0.197 tol=0.751
2024-12-09 20:07:36,803 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=64.8 pTM=0.484 ipTM=0.2 tol=2.3
2024-12-09 20:07:40,122 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=64.7 pTM=0.482 ipTM=0.175 tol=1.29
2024-12-09 20:07:43,442 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.4 pTM=0.488 ipTM=0.18 tol=1.97
2024-12-09 20:07:46,762 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=66.1 pTM=0.495 ipTM=0.188 tol=2.42
2024-12-09 20:07:50,081 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=65 pTM=0.486 ipTM=0.161 tol=2.3
2024-12-09 20:07:53,401 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.7 pTM=0.494 ipTM=0.183 tol=2.33
2024-12-09 20:07:56,717 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.9 pTM=0.497 ipTM=0.19 tol=4.53
2024-12-09 20:08:00,036 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=66.1 pTM=0.497 ipTM=0.188 tol=0.585
2024-12-09 20:08:03,357 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.4 pTM=0.496 ipTM=0.183 tol=2.03
2024-12-09 20:08:06,673 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=66 pTM=0.499 ipTM=0.193 tol=1.5
2024-12-09 20:08:09,993 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.8 pTM=0.498 ipTM=0.186 tol=1.14
2024-12-09 20:08:13,307 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=65.9 pTM=0.5 ipTM=0.206 tol=1.27
2024-12-09 20:08:16,629 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=66.1 pTM=0.498 ipTM=0.182 tol=1.29
2024-12-09 20:08:19,945 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=66.2 pTM=0.503 ipTM=0.198 tol=1.21
2024-12-09 20:08:23,265 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=66.1 pTM=0.5 ipTM=0.188 tol=1.07
2024-12-09 20:08:26,584 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=66.4 pTM=0.505 ipTM=0.199 tol=0.809
2024-12-09 20:08:29,906 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=66.2 pTM=0.501 ipTM=0.188 tol=1.43
2024-12-09 20:08:33,233 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=66.4 pTM=0.507 ipTM=0.199 tol=1.46
2024-12-09 20:08:36,565 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=66.1 pTM=0.502 ipTM=0.184 tol=1.07
2024-12-09 20:08:39,891 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=66.4 pTM=0.507 ipTM=0.2 tol=1.46
2024-12-09 20:08:43,223 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=66.9 pTM=0.505 ipTM=0.188 tol=1.29
2024-12-09 20:08:46,553 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=66.8 pTM=0.51 ipTM=0.199 tol=1.05
2024-12-09 20:08:49,901 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=66.6 pTM=0.509 ipTM=0.205 tol=0.937
2024-12-09 20:08:53,264 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=67.1 pTM=0.515 ipTM=0.21 tol=0.779
2024-12-09 20:08:53,264 alphafold2_multimer_v3_model_1_seed_000 took 250.0s (30 recycles)
2024-12-09 20:08:56,699 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=60.5 pTM=0.538 ipTM=0.36
2024-12-09 20:09:00,047 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=65.6 pTM=0.513 ipTM=0.287 tol=10.1
2024-12-09 20:09:03,367 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=64.5 pTM=0.49 ipTM=0.23 tol=6.35
2024-12-09 20:09:06,708 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=65.5 pTM=0.501 ipTM=0.232 tol=8.56
2024-12-09 20:09:10,027 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=66.4 pTM=0.515 ipTM=0.238 tol=2
2024-12-09 20:09:13,349 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.2 pTM=0.52 ipTM=0.231 tol=2.58
2024-12-09 20:09:16,682 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=67.4 pTM=0.522 ipTM=0.231 tol=1.26
2024-12-09 20:09:20,009 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=67.8 pTM=0.527 ipTM=0.242 tol=1.13
2024-12-09 20:09:23,343 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=67.9 pTM=0.525 ipTM=0.232 tol=0.957
2024-12-09 20:09:26,674 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=67.7 pTM=0.519 ipTM=0.213 tol=2.78
2024-12-09 20:09:30,011 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=67.9 pTM=0.519 ipTM=0.214 tol=3.28
2024-12-09 20:09:33,341 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=67.4 pTM=0.516 ipTM=0.207 tol=3.19
2024-12-09 20:09:36,670 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=68.1 pTM=0.517 ipTM=0.211 tol=2.01
2024-12-09 20:09:40,002 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=68.5 pTM=0.523 ipTM=0.227 tol=1.37
2024-12-09 20:09:43,337 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=68.4 pTM=0.517 ipTM=0.209 tol=2.16
2024-12-09 20:09:46,670 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=68.1 pTM=0.515 ipTM=0.199 tol=4.89
2024-12-09 20:09:50,005 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=68.4 pTM=0.519 ipTM=0.217 tol=4.61
2024-12-09 20:09:53,339 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=68.5 pTM=0.521 ipTM=0.217 tol=1.89
2024-12-09 20:09:56,667 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=68.2 pTM=0.52 ipTM=0.22 tol=2.34
2024-12-09 20:10:00,002 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=68.4 pTM=0.522 ipTM=0.22 tol=1.07
2024-12-09 20:10:03,340 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=68.4 pTM=0.521 ipTM=0.216 tol=2.39
2024-12-09 20:10:06,674 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=68.3 pTM=0.521 ipTM=0.219 tol=0.894
2024-12-09 20:10:10,004 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=68.4 pTM=0.521 ipTM=0.221 tol=0.826
2024-12-09 20:10:13,339 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=68.8 pTM=0.522 ipTM=0.225 tol=2.22
2024-12-09 20:10:16,674 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=68.5 pTM=0.521 ipTM=0.215 tol=1.94
2024-12-09 20:10:20,012 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=69.1 pTM=0.527 ipTM=0.235 tol=1.28
2024-12-09 20:10:23,341 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=68.4 pTM=0.514 ipTM=0.202 tol=1.47
2024-12-09 20:10:26,674 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=69.2 pTM=0.524 ipTM=0.225 tol=1.96
2024-12-09 20:10:30,010 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=68.5 pTM=0.516 ipTM=0.202 tol=1.53
2024-12-09 20:10:33,344 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=68.4 pTM=0.516 ipTM=0.206 tol=0.92
2024-12-09 20:10:36,682 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=68.7 pTM=0.517 ipTM=0.203 tol=0.812
2024-12-09 20:10:36,682 alphafold2_multimer_v3_model_2_seed_000 took 103.3s (30 recycles)
2024-12-09 20:10:40,095 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=62.9 pTM=0.504 ipTM=0.247
2024-12-09 20:10:43,424 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=64.9 pTM=0.492 ipTM=0.186 tol=7.24
2024-12-09 20:10:46,747 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=66.1 pTM=0.551 ipTM=0.366 tol=8.35
2024-12-09 20:10:50,073 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.8 pTM=0.503 ipTM=0.219 tol=4.22
2024-12-09 20:10:53,399 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.1 pTM=0.511 ipTM=0.221 tol=2.57
2024-12-09 20:10:56,724 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.9 pTM=0.516 ipTM=0.232 tol=2.19
2024-12-09 20:11:00,050 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.7 pTM=0.513 ipTM=0.216 tol=2.97
2024-12-09 20:11:03,375 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=68.2 pTM=0.573 ipTM=0.395 tol=2.58
2024-12-09 20:11:06,706 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.8 pTM=0.51 ipTM=0.203 tol=3.01
2024-12-09 20:11:10,033 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=67.9 pTM=0.541 ipTM=0.285 tol=4.96
2024-12-09 20:11:13,367 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=68.2 pTM=0.513 ipTM=0.202 tol=2.86
2024-12-09 20:11:16,704 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.7 pTM=0.521 ipTM=0.227 tol=2.06
2024-12-09 20:11:20,040 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.7 pTM=0.528 ipTM=0.249 tol=2.47
2024-12-09 20:11:23,379 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=66.9 pTM=0.509 ipTM=0.195 tol=1.78
2024-12-09 20:11:26,713 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=66.8 pTM=0.522 ipTM=0.232 tol=5.98
2024-12-09 20:11:30,046 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=66.9 pTM=0.52 ipTM=0.274 tol=2.47
2024-12-09 20:11:33,384 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=65.8 pTM=0.508 ipTM=0.189 tol=2
2024-12-09 20:11:36,727 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=66.1 pTM=0.496 ipTM=0.161 tol=7.8
2024-12-09 20:11:40,069 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=66.4 pTM=0.499 ipTM=0.17 tol=1.8
2024-12-09 20:11:43,412 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=67.3 pTM=0.51 ipTM=0.202 tol=3.98
2024-12-09 20:11:46,751 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=66.8 pTM=0.491 ipTM=0.144 tol=6.03
2024-12-09 20:11:50,080 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=69.2 pTM=0.562 ipTM=0.333 tol=6.52
2024-12-09 20:11:53,409 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=68.4 pTM=0.535 ipTM=0.259 tol=1.87
2024-12-09 20:11:56,745 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=66.8 pTM=0.499 ipTM=0.164 tol=8.31
2024-12-09 20:12:00,079 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=67.6 pTM=0.508 ipTM=0.168 tol=10.6
2024-12-09 20:12:03,406 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.8 pTM=0.517 ipTM=0.188 tol=3.27
2024-12-09 20:12:06,743 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.7 pTM=0.516 ipTM=0.183 tol=4.89
2024-12-09 20:12:10,075 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=67.7 pTM=0.518 ipTM=0.187 tol=5.79
2024-12-09 20:12:13,410 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=67.7 pTM=0.519 ipTM=0.191 tol=7.93
2024-12-09 20:12:16,735 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=67.9 pTM=0.534 ipTM=0.229 tol=6.71
2024-12-09 20:12:20,070 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=68 pTM=0.517 ipTM=0.194 tol=9.73
2024-12-09 20:12:20,070 alphafold2_multimer_v3_model_3_seed_000 took 103.3s (30 recycles)
2024-12-09 20:12:23,478 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=65.8 pTM=0.512 ipTM=0.314
2024-12-09 20:12:26,802 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=63.8 pTM=0.488 ipTM=0.299 tol=6.48
2024-12-09 20:12:30,120 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=60.2 pTM=0.426 ipTM=0.197 tol=7.04
2024-12-09 20:12:33,434 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=60.1 pTM=0.427 ipTM=0.223 tol=6.12
2024-12-09 20:12:36,749 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=58.4 pTM=0.39 ipTM=0.166 tol=2.12
2024-12-09 20:12:40,065 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=59.2 pTM=0.41 ipTM=0.204 tol=4.84
2024-12-09 20:12:43,382 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=59.3 pTM=0.399 ipTM=0.19 tol=4.91
2024-12-09 20:12:46,694 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=59.7 pTM=0.401 ipTM=0.172 tol=3.12
2024-12-09 20:12:50,006 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=59.9 pTM=0.408 ipTM=0.178 tol=2.25
2024-12-09 20:12:53,320 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=59.9 pTM=0.401 ipTM=0.18 tol=1.19
2024-12-09 20:12:56,633 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=60.2 pTM=0.4 ipTM=0.168 tol=2.43
2024-12-09 20:12:59,945 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=59.5 pTM=0.397 ipTM=0.16 tol=3.13
2024-12-09 20:13:03,256 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=60.2 pTM=0.406 ipTM=0.172 tol=1.24
2024-12-09 20:13:06,564 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=60.4 pTM=0.395 ipTM=0.164 tol=2.37
2024-12-09 20:13:09,875 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=60.1 pTM=0.398 ipTM=0.17 tol=1.81
2024-12-09 20:13:13,185 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=59.8 pTM=0.392 ipTM=0.16 tol=1.8
2024-12-09 20:13:16,496 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=59.3 pTM=0.389 ipTM=0.161 tol=2.39
2024-12-09 20:13:19,808 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=59.7 pTM=0.393 ipTM=0.165 tol=2.37
2024-12-09 20:13:23,119 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=59.1 pTM=0.391 ipTM=0.162 tol=4.8
2024-12-09 20:13:26,426 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=59.4 pTM=0.396 ipTM=0.16 tol=2.99
2024-12-09 20:13:29,738 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=60 pTM=0.4 ipTM=0.175 tol=2.77
2024-12-09 20:13:33,048 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=59.2 pTM=0.392 ipTM=0.174 tol=2.28
2024-12-09 20:13:36,357 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=60.1 pTM=0.395 ipTM=0.171 tol=2.2
2024-12-09 20:13:39,667 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=59.4 pTM=0.387 ipTM=0.164 tol=2.49
2024-12-09 20:13:42,982 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=60.1 pTM=0.39 ipTM=0.149 tol=1.88
2024-12-09 20:13:46,293 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=59.8 pTM=0.392 ipTM=0.166 tol=3.09
2024-12-09 20:13:49,604 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=60.8 pTM=0.405 ipTM=0.193 tol=2.64
2024-12-09 20:13:52,915 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=59.6 pTM=0.389 ipTM=0.15 tol=1.85
2024-12-09 20:13:56,227 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=60.2 pTM=0.4 ipTM=0.169 tol=4.42
2024-12-09 20:13:59,536 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=59.6 pTM=0.391 ipTM=0.155 tol=4.17
2024-12-09 20:14:02,846 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.4 pTM=0.404 ipTM=0.185 tol=2.26
2024-12-09 20:14:02,847 alphafold2_multimer_v3_model_4_seed_000 took 102.7s (30 recycles)
2024-12-09 20:14:06,263 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=60.4 pTM=0.543 ipTM=0.316
2024-12-09 20:14:09,600 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=63.8 pTM=0.5 ipTM=0.177 tol=13.3
2024-12-09 20:14:12,934 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=63.7 pTM=0.486 ipTM=0.158 tol=8.6
2024-12-09 20:14:16,264 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=65 pTM=0.514 ipTM=0.229 tol=3.91
2024-12-09 20:14:19,600 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=64.8 pTM=0.486 ipTM=0.141 tol=5.32
2024-12-09 20:14:22,936 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=64.3 pTM=0.49 ipTM=0.162 tol=3.59
2024-12-09 20:14:26,266 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65.4 pTM=0.511 ipTM=0.207 tol=9.93
2024-12-09 20:14:29,595 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=65.6 pTM=0.506 ipTM=0.177 tol=6.23
2024-12-09 20:14:32,921 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=66.4 pTM=0.521 ipTM=0.22 tol=3.3
2024-12-09 20:14:36,248 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=65.3 pTM=0.49 ipTM=0.131 tol=5.58
2024-12-09 20:14:39,573 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=64.6 pTM=0.506 ipTM=0.168 tol=5.13
2024-12-09 20:14:42,898 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=65.2 pTM=0.501 ipTM=0.165 tol=4.07
2024-12-09 20:14:46,226 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=65.1 pTM=0.496 ipTM=0.141 tol=3.5
2024-12-09 20:14:49,553 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=65.2 pTM=0.509 ipTM=0.187 tol=5.19
2024-12-09 20:14:52,882 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=65.3 pTM=0.493 ipTM=0.134 tol=5.16
2024-12-09 20:14:56,211 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=64.8 pTM=0.502 ipTM=0.169 tol=5.19
2024-12-09 20:14:59,550 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=65 pTM=0.493 ipTM=0.14 tol=4.99
2024-12-09 20:15:02,887 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=65.8 pTM=0.517 ipTM=0.21 tol=3.57
2024-12-09 20:15:06,221 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=65.2 pTM=0.493 ipTM=0.141 tol=3.79
2024-12-09 20:15:09,556 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=65.7 pTM=0.514 ipTM=0.201 tol=7.21
2024-12-09 20:15:12,894 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=65.1 pTM=0.492 ipTM=0.135 tol=6.2
2024-12-09 20:15:16,259 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=64.9 pTM=0.502 ipTM=0.168 tol=5.02
2024-12-09 20:15:19,626 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=64.9 pTM=0.498 ipTM=0.154 tol=3.06
2024-12-09 20:15:22,974 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=65.6 pTM=0.516 ipTM=0.205 tol=3.69
2024-12-09 20:15:26,329 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=64.6 pTM=0.495 ipTM=0.139 tol=5.53
2024-12-09 20:15:29,659 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=63.7 pTM=0.504 ipTM=0.162 tol=6.09
2024-12-09 20:15:33,006 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=65.3 pTM=0.502 ipTM=0.165 tol=5.47
2024-12-09 20:15:36,336 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=65.5 pTM=0.498 ipTM=0.15 tol=4.69
2024-12-09 20:15:39,663 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=65.9 pTM=0.518 ipTM=0.21 tol=4.88
2024-12-09 20:15:42,998 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=65 pTM=0.495 ipTM=0.146 tol=3.25
2024-12-09 20:15:46,324 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=64.9 pTM=0.504 ipTM=0.165 tol=6.21
2024-12-09 20:15:46,324 alphafold2_multimer_v3_model_5_seed_000 took 103.4s (30 recycles)
2024-12-09 20:15:46,412 reranking models by 'multimer' metric
2024-12-09 20:15:48,105 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 20:15:57,433 Relaxation took 11.0s
2024-12-09 20:15:57,433 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=67.1 pTM=0.515 ipTM=0.21
2024-12-09 20:16:04,845 Relaxation took 7.4s
2024-12-09 20:16:04,845 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=68.7 pTM=0.517 ipTM=0.203
2024-12-09 20:16:17,670 Relaxation took 12.8s
2024-12-09 20:16:17,670 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68 pTM=0.517 ipTM=0.194
2024-12-09 20:16:23,686 Relaxation took 6.0s
2024-12-09 20:16:23,686 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=64.9 pTM=0.504 ipTM=0.165
2024-12-09 20:16:30,007 Relaxation took 6.3s
2024-12-09 20:16:30,007 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.4 pTM=0.404 ipTM=0.185
2024-12-09 20:16:30,896 Done