2024-12-09 20:17:08,607 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 20:17:08,905 Running on GPU
2024-12-09 20:17:12,312 Found 6 citations for tools or databases
2024-12-09 20:17:12,312 Query 1/1: VHL_SETDB1 (length 1504)
2024-12-09 20:17:12,608 Sleeping for 10s. Reason: PENDING
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2024-12-09 20:19:10,098 Sleeping for 8s. Reason: RUNNING
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2024-12-09 20:19:42,126 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:20:04,353 Sleeping for 8s. Reason: PENDING
2024-12-09 20:20:12,972 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:20:21,231 Sleeping for 5s. Reason: RUNNING
2024-12-09 20:20:26,483 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:20:34,748 Sleeping for 6s. Reason: RUNNING
2024-12-09 20:20:41,014 Sleeping for 6s. Reason: RUNNING
2024-12-09 20:20:47,270 Sleeping for 6s. Reason: RUNNING
2024-12-09 20:20:53,534 Sleeping for 9s. Reason: RUNNING
2024-12-09 20:21:02,792 Sleeping for 7s. Reason: RUNNING
2024-12-09 20:21:10,054 Sleeping for 9s. Reason: RUNNING
2024-12-09 20:21:19,311 Sleeping for 6s. Reason: RUNNING
2024-12-09 20:21:25,565 Sleeping for 9s. Reason: RUNNING
2024-12-09 20:21:34,838 Sleeping for 8s. Reason: RUNNING
2024-12-09 20:21:43,096 Sleeping for 10s. Reason: RUNNING
2024-12-09 20:21:53,350 Sleeping for 10s. Reason: RUNNING
2024-12-09 20:22:09,646 Setting max_seq=508, max_extra_seq=2048
2024-12-09 20:25:11,520 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=54.8 pTM=0.4 ipTM=0.17
2024-12-09 20:26:14,453 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=56.1 pTM=0.408 ipTM=0.436 tol=15.6
2024-12-09 20:27:17,410 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=55.8 pTM=0.401 ipTM=0.442 tol=8.95
2024-12-09 20:28:20,409 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=56.4 pTM=0.405 ipTM=0.437 tol=4.63
2024-12-09 20:29:23,500 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=56.2 pTM=0.402 ipTM=0.43 tol=3.35
2024-12-09 20:30:26,608 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=56.2 pTM=0.4 ipTM=0.432 tol=2.73
2024-12-09 20:31:29,722 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=56.2 pTM=0.397 ipTM=0.414 tol=5.41
2024-12-09 20:32:32,844 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=56.2 pTM=0.397 ipTM=0.446 tol=5.12
2024-12-09 20:33:36,006 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=56.2 pTM=0.397 ipTM=0.44 tol=2.38
2024-12-09 20:34:39,131 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=56.2 pTM=0.398 ipTM=0.428 tol=1.87
2024-12-09 20:35:42,220 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=56.3 pTM=0.396 ipTM=0.43 tol=1.94
2024-12-09 20:36:45,290 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=56.3 pTM=0.396 ipTM=0.443 tol=1.86
2024-12-09 20:37:48,363 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=56.3 pTM=0.397 ipTM=0.435 tol=1.74
2024-12-09 20:38:51,424 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=56.1 pTM=0.396 ipTM=0.427 tol=1.88
2024-12-09 20:39:54,500 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=56.1 pTM=0.394 ipTM=0.428 tol=1.7
2024-12-09 20:40:57,597 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=56.3 pTM=0.396 ipTM=0.439 tol=1.77
2024-12-09 20:42:00,695 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=56.2 pTM=0.395 ipTM=0.433 tol=1.62
2024-12-09 20:43:03,780 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=56.3 pTM=0.396 ipTM=0.443 tol=5
2024-12-09 20:44:06,865 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=56.5 pTM=0.396 ipTM=0.441 tol=5.37
2024-12-09 20:45:09,951 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=56.4 pTM=0.396 ipTM=0.438 tol=2.65
2024-12-09 20:46:13,064 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=56.5 pTM=0.396 ipTM=0.451 tol=2.38
2024-12-09 20:47:16,167 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=56.5 pTM=0.396 ipTM=0.418 tol=1.66
2024-12-09 20:48:19,270 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=56.4 pTM=0.395 ipTM=0.422 tol=1.72
2024-12-09 20:49:22,387 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=56.5 pTM=0.396 ipTM=0.451 tol=2.39
2024-12-09 20:50:25,508 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=56.5 pTM=0.398 ipTM=0.446 tol=1.61
2024-12-09 20:51:28,617 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=56.3 pTM=0.395 ipTM=0.437 tol=1.85
2024-12-09 20:52:31,732 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=56.4 pTM=0.395 ipTM=0.446 tol=2.32
2024-12-09 20:53:34,839 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=56.5 pTM=0.396 ipTM=0.452 tol=2.18
2024-12-09 20:54:37,968 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=56.4 pTM=0.396 ipTM=0.456 tol=1.74
2024-12-09 20:55:41,091 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=56.5 pTM=0.395 ipTM=0.456 tol=1.49
2024-12-09 20:56:44,228 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=56.5 pTM=0.396 ipTM=0.465 tol=1.24
2024-12-09 20:56:44,230 alphafold2_multimer_v3_model_1_seed_000 took 2069.2s (30 recycles)
2024-12-09 20:57:48,615 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=54.8 pTM=0.396 ipTM=0.169
2024-12-09 20:58:51,691 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=56 pTM=0.406 ipTM=0.434 tol=11
2024-12-09 20:59:54,776 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=56 pTM=0.405 ipTM=0.48 tol=6.89
2024-12-09 21:00:57,881 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=56.5 pTM=0.406 ipTM=0.457 tol=3.01
2024-12-09 21:02:00,980 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=56.4 pTM=0.406 ipTM=0.374 tol=3.5
2024-12-09 21:03:04,039 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=56.5 pTM=0.404 ipTM=0.363 tol=7.3
2024-12-09 21:04:07,098 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=56.6 pTM=0.402 ipTM=0.344 tol=7.05
2024-12-09 21:05:10,168 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56.6 pTM=0.401 ipTM=0.354 tol=4.02
2024-12-09 21:06:13,226 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=56.4 pTM=0.403 ipTM=0.352 tol=6.33
2024-12-09 21:07:16,291 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.4 pTM=0.4 ipTM=0.349 tol=4.86
2024-12-09 21:08:19,340 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=56.5 pTM=0.402 ipTM=0.365 tol=3.66
2024-12-09 21:09:22,422 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=56.6 pTM=0.401 ipTM=0.392 tol=5.03
2024-12-09 21:10:25,475 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=56.6 pTM=0.405 ipTM=0.485 tol=6.95
2024-12-09 21:11:28,558 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=56.6 pTM=0.404 ipTM=0.538 tol=6.58
2024-12-09 21:12:31,608 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=56.8 pTM=0.405 ipTM=0.512 tol=5.24
2024-12-09 21:13:34,726 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=56.8 pTM=0.404 ipTM=0.511 tol=5.38
2024-12-09 21:14:37,814 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=56.9 pTM=0.406 ipTM=0.526 tol=4.8
2024-12-09 21:15:40,940 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=56.9 pTM=0.404 ipTM=0.513 tol=5.39
2024-12-09 21:16:44,028 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=57 pTM=0.404 ipTM=0.516 tol=5.83
2024-12-09 21:17:47,113 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=56.9 pTM=0.403 ipTM=0.551 tol=2.75
2024-12-09 21:18:50,195 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=56.9 pTM=0.403 ipTM=0.56 tol=3.13
2024-12-09 21:19:53,295 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=57 pTM=0.403 ipTM=0.545 tol=3.48
2024-12-09 21:20:56,407 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.8 pTM=0.404 ipTM=0.547 tol=2.77
2024-12-09 21:21:59,476 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.9 pTM=0.407 ipTM=0.559 tol=5.44
2024-12-09 21:23:02,514 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=57 pTM=0.408 ipTM=0.544 tol=4.68
2024-12-09 21:24:05,547 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=56.9 pTM=0.406 ipTM=0.544 tol=3.44
2024-12-09 21:25:08,617 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=56.7 pTM=0.405 ipTM=0.539 tol=2.08
2024-12-09 21:26:11,704 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=57 pTM=0.407 ipTM=0.529 tol=2.34
2024-12-09 21:27:14,791 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=56.6 pTM=0.405 ipTM=0.553 tol=2.23
2024-12-09 21:28:17,850 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=56.9 pTM=0.406 ipTM=0.564 tol=2.83
2024-12-09 21:29:20,889 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.1 pTM=0.407 ipTM=0.556 tol=2.76
2024-12-09 21:29:20,890 alphafold2_multimer_v3_model_2_seed_000 took 1955.3s (30 recycles)
2024-12-09 21:30:25,565 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=54.5 pTM=0.387 ipTM=0.178
2024-12-09 21:31:28,877 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55.8 pTM=0.405 ipTM=0.358 tol=20.5
2024-12-09 21:32:32,162 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=56.2 pTM=0.408 ipTM=0.416 tol=13.1
2024-12-09 21:33:35,481 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=56.8 pTM=0.405 ipTM=0.422 tol=8.1
2024-12-09 21:34:38,715 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56.8 pTM=0.406 ipTM=0.502 tol=5.02
2024-12-09 21:35:41,917 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=56.8 pTM=0.404 ipTM=0.569 tol=3.19
2024-12-09 21:36:45,104 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=56.9 pTM=0.404 ipTM=0.581 tol=2.45
2024-12-09 21:37:48,322 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=56.9 pTM=0.404 ipTM=0.563 tol=2.46
2024-12-09 21:38:51,541 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=56.9 pTM=0.403 ipTM=0.553 tol=1.75
2024-12-09 21:39:54,860 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=57 pTM=0.404 ipTM=0.534 tol=2.07
2024-12-09 21:40:58,145 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=57 pTM=0.401 ipTM=0.565 tol=5.33
2024-12-09 21:42:01,440 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=57.1 pTM=0.403 ipTM=0.545 tol=5.5
2024-12-09 21:43:04,727 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56.9 pTM=0.401 ipTM=0.536 tol=2.86
2024-12-09 21:44:08,011 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=56.9 pTM=0.402 ipTM=0.51 tol=2.49
2024-12-09 21:45:11,262 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=56.8 pTM=0.4 ipTM=0.512 tol=3.02
2024-12-09 21:46:14,562 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=56.9 pTM=0.402 ipTM=0.52 tol=2.18
2024-12-09 21:47:17,809 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=56.8 pTM=0.401 ipTM=0.531 tol=1.71
2024-12-09 21:48:21,043 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=56.8 pTM=0.403 ipTM=0.501 tol=2.19
2024-12-09 21:49:24,261 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56.8 pTM=0.4 ipTM=0.497 tol=2.12
2024-12-09 21:50:27,468 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=56.8 pTM=0.403 ipTM=0.511 tol=2.06
2024-12-09 21:51:30,700 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.8 pTM=0.401 ipTM=0.558 tol=1.62
2024-12-09 21:52:33,963 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=57 pTM=0.402 ipTM=0.546 tol=6.33
2024-12-09 21:53:37,201 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=56.9 pTM=0.401 ipTM=0.544 tol=6.41
2024-12-09 21:54:40,495 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=57 pTM=0.404 ipTM=0.562 tol=3.32
2024-12-09 21:55:43,782 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=57.1 pTM=0.403 ipTM=0.554 tol=2.49
2024-12-09 21:56:47,061 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=57.1 pTM=0.404 ipTM=0.544 tol=2.62
2024-12-09 21:57:50,328 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=57 pTM=0.402 ipTM=0.545 tol=1.9
2024-12-09 21:58:53,592 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=57.1 pTM=0.405 ipTM=0.522 tol=2.73
2024-12-09 21:59:56,825 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=56.9 pTM=0.404 ipTM=0.551 tol=2.97
2024-12-09 22:01:00,060 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=57 pTM=0.405 ipTM=0.542 tol=2.34
2024-12-09 22:02:03,324 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=57 pTM=0.402 ipTM=0.543 tol=2.08
2024-12-09 22:02:03,326 alphafold2_multimer_v3_model_3_seed_000 took 1961.1s (30 recycles)
2024-12-09 22:03:07,982 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=52.8 pTM=0.384 ipTM=0.177
2024-12-09 22:04:11,359 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=54.2 pTM=0.394 ipTM=0.355 tol=17.2
2024-12-09 22:05:14,623 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=54.4 pTM=0.395 ipTM=0.324 tol=10.9
2024-12-09 22:06:17,938 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=54.5 pTM=0.392 ipTM=0.312 tol=7.47
2024-12-09 22:07:21,232 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=54.7 pTM=0.394 ipTM=0.298 tol=6.3
2024-12-09 22:08:24,531 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=54.8 pTM=0.394 ipTM=0.329 tol=3.72
2024-12-09 22:09:27,818 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=54.7 pTM=0.394 ipTM=0.27 tol=6.23
2024-12-09 22:10:31,106 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=54.7 pTM=0.393 ipTM=0.288 tol=5.21
2024-12-09 22:11:34,419 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.7 pTM=0.392 ipTM=0.197 tol=6.16
2024-12-09 22:12:37,666 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54.7 pTM=0.392 ipTM=0.211 tol=5.46
2024-12-09 22:13:40,893 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.7 pTM=0.392 ipTM=0.27 tol=4.88
2024-12-09 22:14:44,142 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.7 pTM=0.392 ipTM=0.282 tol=2.73
2024-12-09 22:15:47,376 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.6 pTM=0.393 ipTM=0.205 tol=3.18
2024-12-09 22:16:50,626 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=54.6 pTM=0.394 ipTM=0.204 tol=6.3
2024-12-09 22:17:53,894 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=54.5 pTM=0.392 ipTM=0.214 tol=4.9
2024-12-09 22:18:57,183 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=54.5 pTM=0.393 ipTM=0.199 tol=5.09
2024-12-09 22:20:00,427 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=54.4 pTM=0.394 ipTM=0.298 tol=5.85
2024-12-09 22:21:03,671 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=54.6 pTM=0.393 ipTM=0.326 tol=4.83
2024-12-09 22:22:06,878 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=54.7 pTM=0.393 ipTM=0.306 tol=2.82
2024-12-09 22:23:10,087 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=54.5 pTM=0.394 ipTM=0.304 tol=3.12
2024-12-09 22:24:13,326 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=54.3 pTM=0.392 ipTM=0.297 tol=3.12
2024-12-09 22:25:16,564 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=54.6 pTM=0.392 ipTM=0.298 tol=5.02
2024-12-09 22:26:19,810 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=54.4 pTM=0.393 ipTM=0.301 tol=5.66
2024-12-09 22:27:23,010 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=54.3 pTM=0.394 ipTM=0.279 tol=3.88
2024-12-09 22:28:26,206 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=54.6 pTM=0.394 ipTM=0.338 tol=4.5
2024-12-09 22:29:29,421 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=54.5 pTM=0.395 ipTM=0.319 tol=5.23
2024-12-09 22:30:32,629 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=54.2 pTM=0.395 ipTM=0.415 tol=4.13
2024-12-09 22:31:35,903 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=54.5 pTM=0.394 ipTM=0.266 tol=3.21
2024-12-09 22:32:39,160 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=54.3 pTM=0.393 ipTM=0.33 tol=3.03
2024-12-09 22:33:42,403 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=54.4 pTM=0.395 ipTM=0.317 tol=2.33
2024-12-09 22:34:45,648 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=54.6 pTM=0.396 ipTM=0.305 tol=2.9
2024-12-09 22:34:45,650 alphafold2_multimer_v3_model_4_seed_000 took 1961.0s (30 recycles)
2024-12-09 22:35:50,234 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=52.9 pTM=0.391 ipTM=0.183
2024-12-09 22:36:53,463 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=54.7 pTM=0.404 ipTM=0.302 tol=13.9
2024-12-09 22:37:56,742 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55 pTM=0.404 ipTM=0.315 tol=8.63
2024-12-09 22:39:00,045 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=54.9 pTM=0.4 ipTM=0.266 tol=17.2
2024-12-09 22:40:03,345 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55.4 pTM=0.398 ipTM=0.251 tol=10.2
2024-12-09 22:41:06,692 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.6 pTM=0.4 ipTM=0.348 tol=9.99
2024-12-09 22:42:09,990 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55.7 pTM=0.399 ipTM=0.358 tol=7.88
2024-12-09 22:43:13,267 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.7 pTM=0.399 ipTM=0.307 tol=9.97
2024-12-09 22:44:16,534 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.9 pTM=0.4 ipTM=0.349 tol=4.14
2024-12-09 22:45:19,756 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.8 pTM=0.4 ipTM=0.341 tol=4.66
2024-12-09 22:46:22,990 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.9 pTM=0.4 ipTM=0.334 tol=5.39
2024-12-09 22:47:26,227 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.7 pTM=0.4 ipTM=0.305 tol=3.16
2024-12-09 22:48:29,476 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.8 pTM=0.399 ipTM=0.354 tol=5.57
2024-12-09 22:49:32,699 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.8 pTM=0.403 ipTM=0.359 tol=6.38
2024-12-09 22:50:35,936 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.7 pTM=0.401 ipTM=0.312 tol=4.45
2024-12-09 22:51:39,185 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.7 pTM=0.402 ipTM=0.406 tol=5.02
2024-12-09 22:52:42,422 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.8 pTM=0.402 ipTM=0.37 tol=4.68
2024-12-09 22:53:45,648 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.8 pTM=0.401 ipTM=0.327 tol=3.16
2024-12-09 22:54:48,903 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=56 pTM=0.401 ipTM=0.328 tol=3
2024-12-09 22:55:52,163 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.8 pTM=0.4 ipTM=0.327 tol=4.74
2024-12-09 22:56:55,417 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.6 pTM=0.4 ipTM=0.365 tol=5.52
2024-12-09 22:57:58,628 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=56 pTM=0.4 ipTM=0.369 tol=4.98
2024-12-09 22:59:01,851 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.8 pTM=0.4 ipTM=0.37 tol=4.96
2024-12-09 23:00:05,068 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.8 pTM=0.4 ipTM=0.352 tol=4.82
2024-12-09 23:01:08,281 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.7 pTM=0.401 ipTM=0.344 tol=3.19
2024-12-09 23:02:11,495 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.8 pTM=0.399 ipTM=0.36 tol=4.73
2024-12-09 23:03:14,717 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.9 pTM=0.402 ipTM=0.374 tol=2.56
2024-12-09 23:04:17,928 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.7 pTM=0.401 ipTM=0.348 tol=5.13
2024-12-09 23:05:21,181 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.6 pTM=0.4 ipTM=0.354 tol=5.94
2024-12-09 23:06:24,425 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.8 pTM=0.4 ipTM=0.37 tol=2.46
2024-12-09 23:07:27,674 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.9 pTM=0.401 ipTM=0.365 tol=4.39
2024-12-09 23:07:27,675 alphafold2_multimer_v3_model_5_seed_000 took 1960.7s (30 recycles)
2024-12-09 23:07:29,011 reranking models by 'multimer' metric
2024-12-09 23:07:31,861 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-09 23:10:13,981 Relaxation took 165.0s
2024-12-09 23:10:13,981 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.1 pTM=0.407 ipTM=0.556
2024-12-09 23:12:53,125 Relaxation took 159.1s
2024-12-09 23:12:53,126 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=57 pTM=0.402 ipTM=0.543
2024-12-09 23:15:07,546 Relaxation took 134.4s
2024-12-09 23:15:07,546 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=56.5 pTM=0.396 ipTM=0.465
2024-12-09 23:18:04,253 Relaxation took 176.7s
2024-12-09 23:18:04,255 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.9 pTM=0.401 ipTM=0.365
2024-12-09 23:21:15,249 Relaxation took 191.0s
2024-12-09 23:21:15,250 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=54.6 pTM=0.396 ipTM=0.305
2024-12-09 23:21:18,737 Done