2024-12-09 21:33:30,265 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-12-09 21:33:30,585 Running on GPU
2024-12-09 21:33:34,348 Found 6 citations for tools or databases
2024-12-09 21:33:34,348 Query 1/1: VPS41_VPS33A (length 1450)
2024-12-09 21:33:34,628 Sleeping for 8s. Reason: PENDING
2024-12-09 21:33:42,885 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:33:48,136 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:33:57,396 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:34:07,659 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:34:16,916 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:34:23,173 Sleeping for 8s. Reason: RUNNING
2024-12-09 21:34:31,431 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:34:38,689 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:34:48,951 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:34:54,204 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:35:03,464 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:35:13,722 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:35:22,981 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:35:30,239 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:35:40,495 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:35:47,751 Sleeping for 8s. Reason: RUNNING
2024-12-09 21:35:56,015 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:36:03,271 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:36:08,527 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:36:17,786 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:36:24,042 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:36:34,297 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:36:43,553 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:36:50,812 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:36:57,064 Sleeping for 8s. Reason: RUNNING
2024-12-09 21:37:06,844 Sleeping for 5s. Reason: PENDING
2024-12-09 21:37:12,099 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:37:22,359 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:37:28,623 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:37:34,884 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:37:45,148 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:37:52,405 Sleeping for 10s. Reason: RUNNING
2024-12-09 21:38:02,666 Sleeping for 8s. Reason: RUNNING
2024-12-09 21:38:10,922 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:38:16,176 Sleeping for 9s. Reason: RUNNING
2024-12-09 21:38:25,447 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:38:31,704 Sleeping for 6s. Reason: RUNNING
2024-12-09 21:38:37,954 Sleeping for 7s. Reason: RUNNING
2024-12-09 21:38:45,209 Sleeping for 8s. Reason: RUNNING
2024-12-09 21:38:53,483 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:38:58,742 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:39:04,001 Sleeping for 5s. Reason: RUNNING
2024-12-09 21:39:15,389 Setting max_seq=508, max_extra_seq=2048
2024-12-09 21:42:46,428 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.7 pTM=0.476 ipTM=0.162
2024-12-09 21:43:45,539 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=80.5 pTM=0.5 ipTM=0.218 tol=8.24
2024-12-09 21:44:44,784 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.2 pTM=0.501 ipTM=0.217 tol=5.24
2024-12-09 21:45:44,111 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.7 pTM=0.505 ipTM=0.227 tol=3.86
2024-12-09 21:46:43,499 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.4 pTM=0.508 ipTM=0.244 tol=16.5
2024-12-09 21:47:42,865 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.7 pTM=0.507 ipTM=0.237 tol=11.5
2024-12-09 21:48:42,216 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.508 ipTM=0.243 tol=3.04
2024-12-09 21:49:41,449 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.6 pTM=0.536 ipTM=0.378 tol=8.11
2024-12-09 21:50:40,775 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.1 pTM=0.522 ipTM=0.253 tol=2.95
2024-12-09 21:51:40,102 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.6 pTM=0.52 ipTM=0.257 tol=2.52
2024-12-09 21:52:39,434 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.4 pTM=0.53 ipTM=0.265 tol=2.74
2024-12-09 21:53:38,813 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=80.1 pTM=0.512 ipTM=0.253 tol=3.12
2024-12-09 21:54:38,187 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.5 pTM=0.51 ipTM=0.252 tol=2.88
2024-12-09 21:55:37,475 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=79.4 pTM=0.537 ipTM=0.392 tol=5.28
2024-12-09 21:56:36,773 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.4 pTM=0.519 ipTM=0.262 tol=3.3
2024-12-09 21:57:36,080 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.2 pTM=0.508 ipTM=0.246 tol=2.88
2024-12-09 21:58:35,336 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=80.2 pTM=0.516 ipTM=0.261 tol=1.86
2024-12-09 21:59:34,606 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80.5 pTM=0.511 ipTM=0.258 tol=1.64
2024-12-09 22:00:33,873 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80.2 pTM=0.511 ipTM=0.267 tol=1.71
2024-12-09 22:01:33,112 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=79.2 pTM=0.524 ipTM=0.289 tol=4.38
2024-12-09 22:02:32,451 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=79.8 pTM=0.51 ipTM=0.253 tol=4.9
2024-12-09 22:03:31,747 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=80 pTM=0.509 ipTM=0.256 tol=2.83
2024-12-09 22:04:30,981 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=78.9 pTM=0.54 ipTM=0.417 tol=5.74
2024-12-09 22:05:30,307 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=79.7 pTM=0.507 ipTM=0.254 tol=4.12
2024-12-09 22:06:29,630 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=79.8 pTM=0.505 ipTM=0.25 tol=4.32
2024-12-09 22:07:28,971 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=80.1 pTM=0.509 ipTM=0.257 tol=2.62
2024-12-09 22:08:28,372 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=80.3 pTM=0.515 ipTM=0.246 tol=3.61
2024-12-09 22:09:27,739 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=80.2 pTM=0.516 ipTM=0.257 tol=3.04
2024-12-09 22:10:27,096 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=80.2 pTM=0.509 ipTM=0.254 tol=4.49
2024-12-09 22:11:26,459 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=80.2 pTM=0.51 ipTM=0.25 tol=2.14
2024-12-09 22:12:25,822 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=80.2 pTM=0.509 ipTM=0.245 tol=0.998
2024-12-09 22:12:25,823 alphafold2_multimer_v3_model_1_seed_000 took 1985.1s (30 recycles)
2024-12-09 22:13:26,619 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.3 pTM=0.475 ipTM=0.169
2024-12-09 22:14:26,080 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.5 pTM=0.493 ipTM=0.213 tol=13.6
2024-12-09 22:15:25,508 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.8 pTM=0.502 ipTM=0.243 tol=4.42
2024-12-09 22:16:24,895 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.7 pTM=0.508 ipTM=0.259 tol=5.55
2024-12-09 22:17:24,290 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82 pTM=0.517 ipTM=0.277 tol=3.69
2024-12-09 22:18:23,734 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=82.5 pTM=0.516 ipTM=0.274 tol=1.15
2024-12-09 22:19:23,174 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=82.6 pTM=0.528 ipTM=0.303 tol=1.31
2024-12-09 22:20:22,595 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=82.8 pTM=0.518 ipTM=0.279 tol=0.97
2024-12-09 22:21:21,923 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=82.4 pTM=0.542 ipTM=0.313 tol=9.77
2024-12-09 22:22:21,277 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=82.2 pTM=0.541 ipTM=0.291 tol=2.36
2024-12-09 22:23:20,617 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=82 pTM=0.549 ipTM=0.314 tol=0.821
2024-12-09 22:24:19,949 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.9 pTM=0.537 ipTM=0.287 tol=0.808
2024-12-09 22:25:19,222 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.9 pTM=0.546 ipTM=0.312 tol=0.5
2024-12-09 22:26:18,479 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.6 pTM=0.546 ipTM=0.301 tol=1.4
2024-12-09 22:27:17,769 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=82.1 pTM=0.553 ipTM=0.306 tol=0.882
2024-12-09 22:28:17,032 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.8 pTM=0.565 ipTM=0.312 tol=2.48
2024-12-09 22:29:16,259 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=81.8 pTM=0.577 ipTM=0.339 tol=1.24
2024-12-09 22:30:15,462 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=82.1 pTM=0.581 ipTM=0.346 tol=0.798
2024-12-09 22:31:14,663 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=82.1 pTM=0.593 ipTM=0.378 tol=0.625
2024-12-09 22:32:13,936 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=81.8 pTM=0.592 ipTM=0.408 tol=0.708
2024-12-09 22:33:13,174 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=81.8 pTM=0.6 ipTM=0.44 tol=0.614
2024-12-09 22:34:12,426 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=81.7 pTM=0.593 ipTM=0.437 tol=0.61
2024-12-09 22:35:11,638 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=81.8 pTM=0.593 ipTM=0.412 tol=0.413
2024-12-09 22:35:11,639 alphafold2_multimer_v3_model_2_seed_000 took 1364.6s (22 recycles)
2024-12-09 22:36:12,277 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.7 pTM=0.475 ipTM=0.167
2024-12-09 22:37:11,606 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=81.6 pTM=0.498 ipTM=0.238 tol=11.3
2024-12-09 22:38:10,998 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.9 pTM=0.499 ipTM=0.239 tol=5.43
2024-12-09 22:39:10,318 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=82 pTM=0.516 ipTM=0.271 tol=12.1
2024-12-09 22:40:09,658 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.9 pTM=0.516 ipTM=0.279 tol=4.18
2024-12-09 22:41:09,013 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83 pTM=0.515 ipTM=0.275 tol=0.9
2024-12-09 22:42:08,346 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.1 pTM=0.523 ipTM=0.346 tol=4.39
2024-12-09 22:43:07,597 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=83.1 pTM=0.535 ipTM=0.366 tol=4.69
2024-12-09 22:44:06,828 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=83.3 pTM=0.537 ipTM=0.372 tol=0.995
2024-12-09 22:45:06,049 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=83.5 pTM=0.548 ipTM=0.422 tol=0.628
2024-12-09 22:46:05,353 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=83.8 pTM=0.557 ipTM=0.483 tol=1.31
2024-12-09 22:47:04,680 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=83.6 pTM=0.549 ipTM=0.485 tol=1.81
2024-12-09 22:48:04,034 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=83.8 pTM=0.559 ipTM=0.538 tol=1.16
2024-12-09 22:49:03,399 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=83.9 pTM=0.563 ipTM=0.564 tol=0.992
2024-12-09 22:50:02,769 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=84.1 pTM=0.565 ipTM=0.584 tol=2.23
2024-12-09 22:51:02,114 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=84.2 pTM=0.569 ipTM=0.602 tol=1.37
2024-12-09 22:52:01,470 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=84.2 pTM=0.572 ipTM=0.623 tol=1.11
2024-12-09 22:53:00,826 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=84.4 pTM=0.576 ipTM=0.639 tol=1.08
2024-12-09 22:54:00,152 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=84.7 pTM=0.578 ipTM=0.648 tol=1.23
2024-12-09 22:54:59,468 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=84.2 pTM=0.575 ipTM=0.651 tol=1.03
2024-12-09 22:55:58,746 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=84.2 pTM=0.574 ipTM=0.645 tol=0.597
2024-12-09 22:56:57,994 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=84.2 pTM=0.574 ipTM=0.645 tol=1.1
2024-12-09 22:57:57,273 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=84.2 pTM=0.572 ipTM=0.639 tol=1.02
2024-12-09 22:58:56,534 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=84.2 pTM=0.574 ipTM=0.654 tol=0.727
2024-12-09 22:59:55,829 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=84.2 pTM=0.574 ipTM=0.649 tol=0.604
2024-12-09 23:00:55,125 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=84.2 pTM=0.572 ipTM=0.644 tol=0.602
2024-12-09 23:01:54,436 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=84.4 pTM=0.574 ipTM=0.637 tol=0.809
2024-12-09 23:02:53,770 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=84.4 pTM=0.572 ipTM=0.634 tol=0.853
2024-12-09 23:03:53,120 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=84.2 pTM=0.57 ipTM=0.637 tol=1.14
2024-12-09 23:04:52,465 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=84.3 pTM=0.575 ipTM=0.651 tol=0.688
2024-12-09 23:05:51,793 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=84.4 pTM=0.575 ipTM=0.654 tol=0.508
2024-12-09 23:05:51,794 alphafold2_multimer_v3_model_3_seed_000 took 1838.9s (30 recycles)
2024-12-09 23:06:52,452 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.2 pTM=0.481 ipTM=0.228
2024-12-09 23:07:51,942 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=80.8 pTM=0.494 ipTM=0.237 tol=13
2024-12-09 23:08:51,408 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=81.2 pTM=0.499 ipTM=0.237 tol=10.6
2024-12-09 23:09:50,868 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81.9 pTM=0.513 ipTM=0.261 tol=7.33
2024-12-09 23:10:50,296 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82 pTM=0.524 ipTM=0.307 tol=6.15
2024-12-09 23:11:49,723 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.1 pTM=0.536 ipTM=0.329 tol=3.98
2024-12-09 23:12:49,186 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.1 pTM=0.526 ipTM=0.307 tol=2.25
2024-12-09 23:13:48,567 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81.9 pTM=0.534 ipTM=0.299 tol=4.94
2024-12-09 23:14:47,949 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=81.9 pTM=0.526 ipTM=0.262 tol=4.33
2024-12-09 23:15:47,348 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=81.9 pTM=0.523 ipTM=0.257 tol=1.68
2024-12-09 23:16:46,742 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.1 pTM=0.526 ipTM=0.281 tol=3.54
2024-12-09 23:17:46,121 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=81.9 pTM=0.529 ipTM=0.291 tol=2.01
2024-12-09 23:18:45,588 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=81.8 pTM=0.521 ipTM=0.259 tol=4.7
2024-12-09 23:19:45,008 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=81.9 pTM=0.521 ipTM=0.248 tol=1.42
2024-12-09 23:20:44,410 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.2 pTM=0.522 ipTM=0.274 tol=3.47
2024-12-09 23:21:43,787 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=82 pTM=0.533 ipTM=0.276 tol=2.54
2024-12-09 23:22:43,154 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=81.9 pTM=0.528 ipTM=0.258 tol=4.16
2024-12-09 23:23:42,577 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=82.1 pTM=0.523 ipTM=0.249 tol=1.2
2024-12-09 23:24:41,955 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=82.4 pTM=0.527 ipTM=0.283 tol=3.7
2024-12-09 23:25:41,251 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=82.1 pTM=0.534 ipTM=0.307 tol=2.55
2024-12-09 23:26:40,581 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=82.1 pTM=0.525 ipTM=0.29 tol=1.55
2024-12-09 23:27:39,935 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=82.1 pTM=0.529 ipTM=0.285 tol=2.1
2024-12-09 23:28:39,302 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=82.1 pTM=0.528 ipTM=0.285 tol=3.45
2024-12-09 23:29:38,688 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=82.1 pTM=0.54 ipTM=0.315 tol=2.99
2024-12-09 23:30:38,048 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=82.1 pTM=0.549 ipTM=0.366 tol=1.48
2024-12-09 23:31:37,334 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=82.1 pTM=0.561 ipTM=0.428 tol=1.14
2024-12-09 23:32:36,663 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=82.6 pTM=0.575 ipTM=0.471 tol=1.31
2024-12-09 23:33:35,995 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=82.5 pTM=0.583 ipTM=0.497 tol=1.24
2024-12-09 23:34:35,319 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=82.3 pTM=0.586 ipTM=0.526 tol=2.29
2024-12-09 23:35:34,666 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=82.6 pTM=0.604 ipTM=0.602 tol=1.35
2024-12-09 23:36:34,035 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=82.5 pTM=0.617 ipTM=0.642 tol=1.09
2024-12-09 23:36:34,037 alphafold2_multimer_v3_model_4_seed_000 took 1841.0s (30 recycles)
2024-12-09 23:37:34,719 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.4 pTM=0.476 ipTM=0.209
2024-12-09 23:38:34,302 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=81.2 pTM=0.506 ipTM=0.289 tol=17.9
2024-12-09 23:39:33,889 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.8 pTM=0.503 ipTM=0.272 tol=16.2
2024-12-09 23:40:33,258 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.5 pTM=0.51 ipTM=0.293 tol=13.5
2024-12-09 23:41:32,715 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.6 pTM=0.505 ipTM=0.281 tol=4.43
2024-12-09 23:42:32,095 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.7 pTM=0.514 ipTM=0.307 tol=3.41
2024-12-09 23:43:31,420 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.8 pTM=0.516 ipTM=0.311 tol=2.38
2024-12-09 23:44:30,706 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.9 pTM=0.518 ipTM=0.309 tol=5.42
2024-12-09 23:45:30,038 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.8 pTM=0.517 ipTM=0.31 tol=7.15
2024-12-09 23:46:29,378 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=83.1 pTM=0.521 ipTM=0.322 tol=3.66
2024-12-09 23:47:28,737 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=83 pTM=0.518 ipTM=0.315 tol=2.31
2024-12-09 23:48:28,084 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=83.2 pTM=0.519 ipTM=0.318 tol=3.5
2024-12-09 23:49:27,423 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=83.1 pTM=0.522 ipTM=0.33 tol=2.1
2024-12-09 23:50:26,739 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=83.5 pTM=0.527 ipTM=0.347 tol=1.61
2024-12-09 23:51:26,031 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=83.2 pTM=0.527 ipTM=0.338 tol=2.9
2024-12-09 23:52:25,341 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=82.8 pTM=0.526 ipTM=0.337 tol=7.49
2024-12-09 23:53:24,689 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=83.1 pTM=0.525 ipTM=0.336 tol=5.38
2024-12-09 23:54:24,011 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=83.2 pTM=0.521 ipTM=0.323 tol=6.78
2024-12-09 23:55:23,370 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=83.3 pTM=0.52 ipTM=0.325 tol=0.993
2024-12-09 23:56:22,740 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=82.8 pTM=0.522 ipTM=0.322 tol=8.9
2024-12-09 23:57:22,104 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=82.9 pTM=0.522 ipTM=0.329 tol=2.48
2024-12-09 23:58:21,437 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=82.9 pTM=0.522 ipTM=0.326 tol=2.88
2024-12-09 23:59:20,664 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=82.6 pTM=0.532 ipTM=0.344 tol=8.38
2024-12-10 00:00:19,917 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=82.9 pTM=0.53 ipTM=0.34 tol=2.49
2024-12-10 00:01:19,252 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=83.1 pTM=0.525 ipTM=0.337 tol=6.01
2024-12-10 00:02:18,581 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=83.2 pTM=0.53 ipTM=0.345 tol=1.34
2024-12-10 00:03:17,954 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=83.6 pTM=0.53 ipTM=0.354 tol=4.44
2024-12-10 00:04:17,342 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=83.4 pTM=0.527 ipTM=0.344 tol=3.79
2024-12-10 00:05:16,746 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=83.3 pTM=0.528 ipTM=0.347 tol=2.34
2024-12-10 00:06:16,142 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=83.6 pTM=0.527 ipTM=0.344 tol=3.84
2024-12-10 00:07:15,536 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=83.4 pTM=0.527 ipTM=0.348 tol=2.26
2024-12-10 00:07:15,537 alphafold2_multimer_v3_model_5_seed_000 took 1840.2s (30 recycles)
2024-12-10 00:07:16,777 reranking models by 'multimer' metric
2024-12-10 00:07:18,340 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-12-10 00:08:58,868 Relaxation took 102.1s
2024-12-10 00:08:58,869 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=84.4 pTM=0.575 ipTM=0.654
2024-12-10 00:10:00,895 Relaxation took 62.0s
2024-12-10 00:10:00,895 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.5 pTM=0.617 ipTM=0.642
2024-12-10 00:11:21,784 Relaxation took 80.9s
2024-12-10 00:11:21,784 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.8 pTM=0.593 ipTM=0.412
2024-12-10 00:12:14,300 Relaxation took 52.5s
2024-12-10 00:12:14,300 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=83.4 pTM=0.527 ipTM=0.348
2024-12-10 00:13:21,348 Relaxation took 67.0s
2024-12-10 00:13:21,348 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.2 pTM=0.509 ipTM=0.245
2024-12-10 00:13:24,624 Done