2024-12-10 00:44:26,826 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-12-10 00:44:27,170 Running on GPU 2024-12-10 00:44:29,979 Found 6 citations for tools or databases 2024-12-10 00:44:29,979 Query 1/1: WWP1_RECQL5 (length 1913) 2024-12-10 00:44:30,419 Sleeping for 7s. Reason: PENDING 2024-12-10 00:44:37,681 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:44:45,955 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:44:55,211 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:45:04,471 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:45:11,734 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:45:16,999 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:45:25,262 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:45:34,526 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:45:41,779 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:45:49,043 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:45:55,297 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:46:00,553 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:46:10,821 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:46:20,084 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:46:29,348 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:46:39,617 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:46:45,880 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:46:54,154 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:47:00,422 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:47:08,680 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:47:16,946 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:47:24,209 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:47:30,473 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:47:36,736 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:47:45,003 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:47:55,270 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:48:00,535 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:48:10,801 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:48:16,060 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:48:22,320 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:48:32,596 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:48:37,853 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:48:47,130 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:48:53,386 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:48:58,648 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:49:05,910 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:49:14,178 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:49:21,440 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:49:26,703 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:49:31,976 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:49:40,237 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:49:45,494 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:49:55,760 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:50:05,033 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:50:13,297 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:50:22,564 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:50:32,828 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:50:43,091 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:50:50,358 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:51:00,620 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:51:10,459 Sleeping for 5s. Reason: PENDING 2024-12-10 00:51:15,722 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:51:20,986 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:51:27,256 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:51:34,520 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:51:41,779 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:51:52,044 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:52:00,306 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:52:05,564 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:52:13,832 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:52:22,098 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:52:31,366 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:52:40,638 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:52:47,902 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:52:58,168 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:53:07,431 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:53:16,700 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:53:24,962 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:53:30,222 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:53:38,487 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:53:48,750 Sleeping for 10s. Reason: RUNNING 2024-12-10 00:53:59,015 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:54:07,283 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:54:15,548 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:54:20,803 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:54:27,059 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:54:34,317 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:54:39,575 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:54:46,841 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:54:53,101 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:54:58,360 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:55:03,620 Sleeping for 9s. Reason: RUNNING 2024-12-10 00:55:12,885 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:55:21,152 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:55:27,411 Sleeping for 5s. Reason: RUNNING 2024-12-10 00:55:32,676 Sleeping for 6s. Reason: RUNNING 2024-12-10 00:55:38,942 Sleeping for 7s. Reason: RUNNING 2024-12-10 00:55:46,198 Sleeping for 8s. Reason: RUNNING 2024-12-10 00:56:06,033 Setting max_seq=508, max_extra_seq=2048 2024-12-10 01:01:47,974 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=55.9 pTM=0.357 ipTM=0.217 2024-12-10 01:03:40,940 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=54.3 pTM=0.354 ipTM=0.24 tol=15.7 2024-12-10 01:05:34,083 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=54 pTM=0.355 ipTM=0.306 tol=9.01 2024-12-10 01:07:27,663 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=53.8 pTM=0.354 ipTM=0.331 tol=7.49 2024-12-10 01:09:21,213 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.9 pTM=0.354 ipTM=0.33 tol=9.12 2024-12-10 01:11:14,460 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=54.2 pTM=0.353 ipTM=0.335 tol=7.98 2024-12-10 01:13:07,637 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.9 pTM=0.359 ipTM=0.296 tol=8.48 2024-12-10 01:15:00,828 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=54 pTM=0.357 ipTM=0.277 tol=6.57 2024-12-10 01:16:53,995 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=54 pTM=0.356 ipTM=0.283 tol=5.69 2024-12-10 01:18:47,151 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=53.9 pTM=0.354 ipTM=0.233 tol=10.1 2024-12-10 01:20:40,321 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=53.8 pTM=0.353 ipTM=0.261 tol=12 2024-12-10 01:22:33,512 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=53.9 pTM=0.355 ipTM=0.303 tol=5.68 2024-12-10 01:24:26,783 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=53.9 pTM=0.355 ipTM=0.236 tol=9.37 2024-12-10 01:26:20,031 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=54.8 pTM=0.354 ipTM=0.229 tol=6.57 2024-12-10 01:28:13,353 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=54.7 pTM=0.355 ipTM=0.223 tol=7.18 2024-12-10 01:30:06,789 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=54.8 pTM=0.354 ipTM=0.215 tol=8.84 2024-12-10 01:32:00,115 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=54.7 pTM=0.354 ipTM=0.224 tol=11.9 2024-12-10 01:33:53,489 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=54.4 pTM=0.352 ipTM=0.244 tol=9.73 2024-12-10 01:35:46,819 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=55 pTM=0.352 ipTM=0.253 tol=9.4 2024-12-10 01:37:40,066 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=54.7 pTM=0.352 ipTM=0.229 tol=7.49 2024-12-10 01:39:33,321 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=55 pTM=0.351 ipTM=0.233 tol=7.41 2024-12-10 01:41:26,514 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=54.9 pTM=0.352 ipTM=0.245 tol=6.77 2024-12-10 01:43:19,824 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=55.5 pTM=0.354 ipTM=0.257 tol=8.39 2024-12-10 01:45:13,119 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=55.2 pTM=0.354 ipTM=0.242 tol=3.92 2024-12-10 01:47:06,424 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=55 pTM=0.353 ipTM=0.229 tol=2.5 2024-12-10 01:48:59,706 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.9 pTM=0.352 ipTM=0.225 tol=2.89 2024-12-10 01:50:53,074 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=55.3 pTM=0.361 ipTM=0.229 tol=7.2 2024-12-10 01:52:46,386 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=55.3 pTM=0.353 ipTM=0.257 tol=5.07 2024-12-10 01:54:39,675 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=55.2 pTM=0.352 ipTM=0.227 tol=3.58 2024-12-10 01:56:32,919 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=55.1 pTM=0.353 ipTM=0.235 tol=2.54 2024-12-10 01:58:26,080 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=55.2 pTM=0.359 ipTM=0.25 tol=4.02 2024-12-10 01:58:26,082 alphafold2_multimer_v3_model_1_seed_000 took 3733.3s (30 recycles) 2024-12-10 02:00:21,845 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56.3 pTM=0.353 ipTM=0.301 2024-12-10 02:02:14,996 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.2 pTM=0.36 ipTM=0.433 tol=19.4 2024-12-10 02:04:08,295 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.3 pTM=0.356 ipTM=0.443 tol=9.18 2024-12-10 02:06:01,601 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=56.9 pTM=0.348 ipTM=0.393 tol=6.52 2024-12-10 02:07:54,891 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=57.4 pTM=0.353 ipTM=0.403 tol=5.89 2024-12-10 02:09:48,230 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=56.9 pTM=0.346 ipTM=0.385 tol=4.43 2024-12-10 02:11:41,558 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=57.3 pTM=0.348 ipTM=0.386 tol=3.1 2024-12-10 02:13:34,917 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=56.9 pTM=0.348 ipTM=0.375 tol=2.45 2024-12-10 02:15:28,250 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=57.2 pTM=0.349 ipTM=0.377 tol=1.92 2024-12-10 02:17:21,529 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=56.8 pTM=0.348 ipTM=0.36 tol=1.96 2024-12-10 02:19:14,772 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=57.3 pTM=0.349 ipTM=0.387 tol=2.33 2024-12-10 02:21:08,018 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=57.2 pTM=0.351 ipTM=0.373 tol=3.11 2024-12-10 02:23:01,277 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=57.2 pTM=0.349 ipTM=0.379 tol=3.07 2024-12-10 02:24:54,568 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=57.1 pTM=0.349 ipTM=0.363 tol=2.96 2024-12-10 02:26:47,848 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57.2 pTM=0.349 ipTM=0.38 tol=4 2024-12-10 02:28:41,092 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=57.2 pTM=0.349 ipTM=0.383 tol=3.98 2024-12-10 02:30:34,332 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=57 pTM=0.347 ipTM=0.368 tol=3.31 2024-12-10 02:32:27,497 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=57.1 pTM=0.349 ipTM=0.359 tol=2.64 2024-12-10 02:34:20,735 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=56.8 pTM=0.348 ipTM=0.369 tol=3.29 2024-12-10 02:36:14,054 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=56.8 pTM=0.347 ipTM=0.36 tol=3.91 2024-12-10 02:38:07,462 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=57.1 pTM=0.349 ipTM=0.379 tol=3.88 2024-12-10 02:40:00,807 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=57.1 pTM=0.349 ipTM=0.369 tol=3.73 2024-12-10 02:41:54,042 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.9 pTM=0.349 ipTM=0.369 tol=2.71 2024-12-10 02:43:47,251 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=57.1 pTM=0.35 ipTM=0.347 tol=3.37 2024-12-10 02:45:40,471 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=57 pTM=0.349 ipTM=0.388 tol=3.27 2024-12-10 02:47:33,745 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=57.1 pTM=0.349 ipTM=0.392 tol=5.09 2024-12-10 02:49:27,050 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=57 pTM=0.348 ipTM=0.386 tol=4.02 2024-12-10 02:51:20,267 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=57.3 pTM=0.347 ipTM=0.364 tol=4.37 2024-12-10 02:53:13,446 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=57.2 pTM=0.347 ipTM=0.383 tol=6.46 2024-12-10 02:55:06,654 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=57.4 pTM=0.348 ipTM=0.402 tol=5.02 2024-12-10 02:56:59,890 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=57.2 pTM=0.348 ipTM=0.388 tol=5.1 2024-12-10 02:56:59,892 alphafold2_multimer_v3_model_2_seed_000 took 3511.1s (30 recycles) 2024-12-10 02:58:56,099 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=56.2 pTM=0.352 ipTM=0.274 2024-12-10 03:00:49,445 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=55.6 pTM=0.353 ipTM=0.37 tol=12.5 2024-12-10 03:02:42,852 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=55.9 pTM=0.355 ipTM=0.355 tol=7.79 2024-12-10 03:04:36,260 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=55.7 pTM=0.356 ipTM=0.368 tol=9.89 2024-12-10 03:06:29,664 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56.1 pTM=0.356 ipTM=0.381 tol=4.83 2024-12-10 03:08:23,020 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.8 pTM=0.355 ipTM=0.37 tol=4.83 2024-12-10 03:10:16,375 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=56 pTM=0.355 ipTM=0.368 tol=4.91 2024-12-10 03:12:09,710 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=56 pTM=0.355 ipTM=0.379 tol=4.81 2024-12-10 03:14:03,111 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=56.3 pTM=0.357 ipTM=0.365 tol=3.69 2024-12-10 03:15:56,510 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=56 pTM=0.356 ipTM=0.372 tol=3.43 2024-12-10 03:17:49,911 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=56.1 pTM=0.357 ipTM=0.379 tol=4.02 2024-12-10 03:19:43,341 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=55.9 pTM=0.357 ipTM=0.367 tol=3.43 2024-12-10 03:21:36,719 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56.1 pTM=0.355 ipTM=0.382 tol=4.33 2024-12-10 03:23:30,180 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=56 pTM=0.355 ipTM=0.375 tol=3.95 2024-12-10 03:25:23,594 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=56.2 pTM=0.356 ipTM=0.374 tol=2.98 2024-12-10 03:27:16,999 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=56 pTM=0.355 ipTM=0.383 tol=3.85 2024-12-10 03:29:10,414 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=56.2 pTM=0.355 ipTM=0.379 tol=4.98 2024-12-10 03:31:03,837 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.9 pTM=0.356 ipTM=0.374 tol=5.18 2024-12-10 03:32:57,194 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56.1 pTM=0.356 ipTM=0.37 tol=4.78 2024-12-10 03:34:50,577 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=55.8 pTM=0.356 ipTM=0.353 tol=2.78 2024-12-10 03:36:43,936 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.1 pTM=0.356 ipTM=0.365 tol=4.73 2024-12-10 03:38:37,386 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=55.7 pTM=0.354 ipTM=0.358 tol=5.76 2024-12-10 03:40:30,804 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=56.1 pTM=0.356 ipTM=0.359 tol=4.67 2024-12-10 03:42:24,201 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=55.8 pTM=0.356 ipTM=0.365 tol=4.12 2024-12-10 03:44:17,651 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=56.1 pTM=0.355 ipTM=0.343 tol=4.31 2024-12-10 03:46:10,949 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=55.8 pTM=0.356 ipTM=0.353 tol=3.89 2024-12-10 03:48:04,324 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.8 pTM=0.355 ipTM=0.34 tol=3.87 2024-12-10 03:49:57,651 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=55.8 pTM=0.355 ipTM=0.373 tol=4.35 2024-12-10 03:51:51,040 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=55.8 pTM=0.355 ipTM=0.352 tol=5.07 2024-12-10 03:53:44,443 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.8 pTM=0.355 ipTM=0.367 tol=7.37 2024-12-10 03:55:37,869 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=56 pTM=0.355 ipTM=0.36 tol=4.26 2024-12-10 03:55:37,871 alphafold2_multimer_v3_model_3_seed_000 took 3515.3s (30 recycles) 2024-12-10 03:57:34,049 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=54.6 pTM=0.358 ipTM=0.344 2024-12-10 03:59:27,677 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=53.9 pTM=0.359 ipTM=0.401 tol=19.9 2024-12-10 04:01:21,445 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=53.9 pTM=0.35 ipTM=0.335 tol=12.3 2024-12-10 04:03:15,338 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=54.6 pTM=0.351 ipTM=0.385 tol=16.6 2024-12-10 04:05:09,069 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=54.9 pTM=0.354 ipTM=0.377 tol=10.9 2024-12-10 04:07:02,852 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=54.7 pTM=0.353 ipTM=0.361 tol=11.4 2024-12-10 04:08:56,567 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=54.8 pTM=0.355 ipTM=0.368 tol=8.98 2024-12-10 04:10:50,370 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.2 pTM=0.354 ipTM=0.395 tol=8.22 2024-12-10 04:12:44,286 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=54.9 pTM=0.355 ipTM=0.372 tol=6.89 2024-12-10 04:14:38,396 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=54.7 pTM=0.353 ipTM=0.365 tol=7.32 2024-12-10 04:16:32,319 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=54.7 pTM=0.354 ipTM=0.34 tol=6.71 2024-12-10 04:18:26,079 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=54.9 pTM=0.354 ipTM=0.366 tol=5.7 2024-12-10 04:20:19,884 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=54.5 pTM=0.354 ipTM=0.33 tol=5.04 2024-12-10 04:22:13,746 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=54.7 pTM=0.354 ipTM=0.352 tol=7.15 2024-12-10 04:24:07,511 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=54.6 pTM=0.355 ipTM=0.361 tol=7.2 2024-12-10 04:26:01,302 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=54.9 pTM=0.352 ipTM=0.385 tol=3.77 2024-12-10 04:27:55,078 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=54.9 pTM=0.355 ipTM=0.378 tol=5.41 2024-12-10 04:29:48,900 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.1 pTM=0.353 ipTM=0.392 tol=6.19 2024-12-10 04:31:42,636 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=54.8 pTM=0.354 ipTM=0.383 tol=5.01 2024-12-10 04:33:36,456 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=54.7 pTM=0.354 ipTM=0.379 tol=6.2 2024-12-10 04:35:30,327 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=54.6 pTM=0.353 ipTM=0.38 tol=5.28 2024-12-10 04:37:24,101 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=54.6 pTM=0.353 ipTM=0.376 tol=5.46 2024-12-10 04:39:17,761 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.1 pTM=0.357 ipTM=0.403 tol=7.71 2024-12-10 04:41:11,413 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.1 pTM=0.355 ipTM=0.395 tol=6.32 2024-12-10 04:43:04,982 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=54.6 pTM=0.354 ipTM=0.382 tol=6.12 2024-12-10 04:44:58,546 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=54.9 pTM=0.354 ipTM=0.383 tol=6.06 2024-12-10 04:46:52,168 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55.1 pTM=0.357 ipTM=0.365 tol=5.59 2024-12-10 04:48:46,402 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.2 pTM=0.354 ipTM=0.378 tol=3.83 2024-12-10 04:50:40,550 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=54.5 pTM=0.353 ipTM=0.324 tol=4.38 2024-12-10 04:52:34,427 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.2 pTM=0.355 ipTM=0.395 tol=6.3 2024-12-10 04:54:28,226 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55 pTM=0.354 ipTM=0.384 tol=7.01 2024-12-10 04:54:28,228 alphafold2_multimer_v3_model_4_seed_000 took 3527.6s (30 recycles) 2024-12-10 04:56:24,367 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=54 pTM=0.394 ipTM=0.318 2024-12-10 04:58:17,919 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=54.7 pTM=0.35 ipTM=0.385 tol=13.8 2024-12-10 05:00:11,690 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55.6 pTM=0.352 ipTM=0.388 tol=15.4 2024-12-10 05:02:05,382 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=55.7 pTM=0.353 ipTM=0.38 tol=10.5 2024-12-10 05:03:59,014 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55.8 pTM=0.353 ipTM=0.381 tol=12.3 2024-12-10 05:05:52,536 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.7 pTM=0.353 ipTM=0.366 tol=8.63 2024-12-10 05:07:46,074 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55.8 pTM=0.354 ipTM=0.367 tol=8.56 2024-12-10 05:09:39,594 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.4 pTM=0.353 ipTM=0.352 tol=7.05 2024-12-10 05:11:33,194 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.9 pTM=0.354 ipTM=0.347 tol=6.74 2024-12-10 05:13:26,842 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=55.4 pTM=0.353 ipTM=0.338 tol=8.76 2024-12-10 05:15:20,675 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.4 pTM=0.353 ipTM=0.337 tol=4.54 2024-12-10 05:17:14,454 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.5 pTM=0.354 ipTM=0.339 tol=9.21 2024-12-10 05:19:08,096 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.6 pTM=0.355 ipTM=0.337 tol=9.36 2024-12-10 05:21:01,695 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.3 pTM=0.354 ipTM=0.333 tol=12.5 2024-12-10 05:22:55,301 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.5 pTM=0.354 ipTM=0.341 tol=7.57 2024-12-10 05:24:49,024 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.1 pTM=0.354 ipTM=0.333 tol=9.93 2024-12-10 05:26:42,611 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.3 pTM=0.352 ipTM=0.332 tol=5.68 2024-12-10 05:28:36,293 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.6 pTM=0.354 ipTM=0.335 tol=5.8 2024-12-10 05:30:29,928 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.4 pTM=0.353 ipTM=0.329 tol=6.24 2024-12-10 05:32:23,591 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=55.6 pTM=0.355 ipTM=0.326 tol=6.32 2024-12-10 05:34:17,309 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.4 pTM=0.354 ipTM=0.328 tol=10.1 2024-12-10 05:36:10,848 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=55.5 pTM=0.354 ipTM=0.331 tol=7.45 2024-12-10 05:38:04,500 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.2 pTM=0.354 ipTM=0.329 tol=9.34 2024-12-10 05:39:58,115 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=55.7 pTM=0.355 ipTM=0.336 tol=9.23 2024-12-10 05:41:51,813 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.5 pTM=0.353 ipTM=0.339 tol=6.25 2024-12-10 05:43:45,413 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.4 pTM=0.353 ipTM=0.319 tol=8.88 2024-12-10 05:45:39,093 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.2 pTM=0.354 ipTM=0.307 tol=9.94 2024-12-10 05:47:32,888 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=55.4 pTM=0.354 ipTM=0.347 tol=6.18 2024-12-10 05:49:26,746 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.4 pTM=0.353 ipTM=0.346 tol=8.63 2024-12-10 05:51:20,767 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.6 pTM=0.354 ipTM=0.346 tol=8.8 2024-12-10 05:53:14,789 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.3 pTM=0.353 ipTM=0.355 tol=9.95 2024-12-10 05:53:14,791 alphafold2_multimer_v3_model_5_seed_000 took 3523.8s (30 recycles) 2024-12-10 05:53:17,497 reranking models by 'multimer' metric 2024-12-10 05:53:19,846 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-12-10 06:02:23,519 Relaxation took 546.0s 2024-12-10 06:02:23,519 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=57.2 pTM=0.348 ipTM=0.388 2024-12-10 06:10:19,451 Relaxation took 475.9s 2024-12-10 06:10:19,452 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55 pTM=0.354 ipTM=0.384 2024-12-10 06:20:56,281 Relaxation took 636.8s 2024-12-10 06:20:56,281 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=56 pTM=0.355 ipTM=0.36 2024-12-10 06:27:56,417 Relaxation took 420.1s 2024-12-10 06:27:56,417 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.3 pTM=0.353 ipTM=0.355 2024-12-10 06:35:00,534 Relaxation took 424.1s 2024-12-10 06:35:00,534 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=55.2 pTM=0.359 ipTM=0.25 2024-12-10 06:35:06,086 Done