2024-05-06 15:59:53,456 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-06 15:59:53,903 Running on GPU
2024-05-06 15:59:57,786 Found 6 citations for tools or databases
2024-05-06 15:59:57,786 Query 1/1: CDKN1A_FBXW5 (length 730)
2024-05-06 16:00:12,004 Setting max_seq=508, max_extra_seq=2048
2024-05-06 16:02:49,163 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=67.4 pTM=0.671 ipTM=0.143
2024-05-06 16:02:59,871 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.2 pTM=0.685 ipTM=0.195 tol=6.3
2024-05-06 16:03:10,597 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.9 pTM=0.693 ipTM=0.425 tol=3.56
2024-05-06 16:03:21,317 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71 pTM=0.707 ipTM=0.505 tol=1.98
2024-05-06 16:03:32,062 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=71.9 pTM=0.716 ipTM=0.525 tol=0.801
2024-05-06 16:03:42,805 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=71.9 pTM=0.716 ipTM=0.529 tol=0.734
2024-05-06 16:03:53,550 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=72 pTM=0.714 ipTM=0.541 tol=0.668
2024-05-06 16:04:04,329 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=72.1 pTM=0.717 ipTM=0.539 tol=0.866
2024-05-06 16:04:15,109 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.1 pTM=0.716 ipTM=0.534 tol=1.05
2024-05-06 16:04:25,888 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=71.8 pTM=0.712 ipTM=0.547 tol=0.723
2024-05-06 16:04:36,660 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=72.2 pTM=0.717 ipTM=0.542 tol=0.625
2024-05-06 16:04:47,437 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=71.9 pTM=0.714 ipTM=0.54 tol=0.668
2024-05-06 16:04:58,237 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=72.3 pTM=0.719 ipTM=0.558 tol=0.404
2024-05-06 16:04:58,238 alphafold2_multimer_v3_model_1_seed_000 took 281.1s (12 recycles)
2024-05-06 16:05:09,377 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.8 pTM=0.67 ipTM=0.142
2024-05-06 16:05:20,201 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.1 pTM=0.708 ipTM=0.497 tol=9.84
2024-05-06 16:05:31,011 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.7 pTM=0.739 ipTM=0.592 tol=3.24
2024-05-06 16:05:41,816 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.1 pTM=0.75 ipTM=0.603 tol=2.02
2024-05-06 16:05:52,635 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.3 pTM=0.753 ipTM=0.627 tol=0.927
2024-05-06 16:06:03,449 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.5 pTM=0.754 ipTM=0.621 tol=0.42
2024-05-06 16:06:03,450 alphafold2_multimer_v3_model_2_seed_000 took 64.9s (5 recycles)
2024-05-06 16:06:14,576 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=67.4 pTM=0.702 ipTM=0.236
2024-05-06 16:06:25,419 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=69.5 pTM=0.703 ipTM=0.27 tol=4.74
2024-05-06 16:06:36,253 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.3 pTM=0.706 ipTM=0.417 tol=2.82
2024-05-06 16:06:47,079 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.8 pTM=0.706 ipTM=0.418 tol=1.44
2024-05-06 16:06:57,897 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.8 pTM=0.708 ipTM=0.446 tol=0.901
2024-05-06 16:07:08,712 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70.6 pTM=0.705 ipTM=0.421 tol=0.432
2024-05-06 16:07:08,713 alphafold2_multimer_v3_model_3_seed_000 took 64.9s (5 recycles)
2024-05-06 16:07:19,851 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.9 pTM=0.69 ipTM=0.226
2024-05-06 16:07:30,647 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=67.5 pTM=0.701 ipTM=0.383 tol=19.6
2024-05-06 16:07:41,437 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.3 pTM=0.705 ipTM=0.241 tol=3.72
2024-05-06 16:07:52,238 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68.2 pTM=0.72 ipTM=0.305 tol=7.7
2024-05-06 16:08:03,035 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.1 pTM=0.722 ipTM=0.412 tol=4.43
2024-05-06 16:08:13,820 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=69.1 pTM=0.721 ipTM=0.452 tol=1.49
2024-05-06 16:08:24,610 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69.4 pTM=0.734 ipTM=0.485 tol=5.61
2024-05-06 16:08:35,410 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=69.1 pTM=0.715 ipTM=0.432 tol=5.04
2024-05-06 16:08:46,215 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.1 pTM=0.718 ipTM=0.429 tol=2.36
2024-05-06 16:08:57,028 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.6 pTM=0.723 ipTM=0.467 tol=1.25
2024-05-06 16:09:07,823 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.4 pTM=0.721 ipTM=0.444 tol=0.792
2024-05-06 16:09:18,619 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.6 pTM=0.733 ipTM=0.492 tol=5.65
2024-05-06 16:09:29,411 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=69.2 pTM=0.715 ipTM=0.444 tol=5.28
2024-05-06 16:09:40,204 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=68.9 pTM=0.715 ipTM=0.429 tol=1.63
2024-05-06 16:09:51,010 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=69.4 pTM=0.73 ipTM=0.484 tol=5.71
2024-05-06 16:10:01,811 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=69.2 pTM=0.713 ipTM=0.467 tol=5.21
2024-05-06 16:10:12,633 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=69.2 pTM=0.715 ipTM=0.468 tol=1.4
2024-05-06 16:10:23,456 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=69.5 pTM=0.719 ipTM=0.474 tol=1.75
2024-05-06 16:10:34,273 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=69.1 pTM=0.717 ipTM=0.463 tol=1.88
2024-05-06 16:10:45,084 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=69.1 pTM=0.721 ipTM=0.479 tol=3.32
2024-05-06 16:10:55,876 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=69.2 pTM=0.717 ipTM=0.465 tol=3.03
2024-05-06 16:11:06,681 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=69.4 pTM=0.729 ipTM=0.486 tol=6.04
2024-05-06 16:11:17,484 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=69.1 pTM=0.711 ipTM=0.458 tol=5.24
2024-05-06 16:11:28,317 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=69.1 pTM=0.717 ipTM=0.489 tol=2.25
2024-05-06 16:11:39,136 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=69.1 pTM=0.715 ipTM=0.485 tol=2.27
2024-05-06 16:11:49,942 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=68.9 pTM=0.714 ipTM=0.483 tol=4.41
2024-05-06 16:12:00,744 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=69.2 pTM=0.718 ipTM=0.47 tol=3.92
2024-05-06 16:12:11,541 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=69.1 pTM=0.716 ipTM=0.474 tol=1.52
2024-05-06 16:12:22,334 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=68.7 pTM=0.715 ipTM=0.481 tol=3.68
2024-05-06 16:12:33,139 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=68.9 pTM=0.713 ipTM=0.458 tol=3.46
2024-05-06 16:12:43,933 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=68.9 pTM=0.711 ipTM=0.454 tol=2.6
2024-05-06 16:12:43,934 alphafold2_multimer_v3_model_4_seed_000 took 334.9s (30 recycles)
2024-05-06 16:12:55,081 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.1 pTM=0.72 ipTM=0.294
2024-05-06 16:13:05,912 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.8 pTM=0.707 ipTM=0.49 tol=6.82
2024-05-06 16:13:16,741 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68 pTM=0.713 ipTM=0.496 tol=1.91
2024-05-06 16:13:27,562 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=68.9 pTM=0.717 ipTM=0.517 tol=1.58
2024-05-06 16:13:38,381 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.2 pTM=0.719 ipTM=0.513 tol=0.872
2024-05-06 16:13:49,206 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=69.6 pTM=0.727 ipTM=0.549 tol=0.879
2024-05-06 16:14:00,017 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.9 pTM=0.73 ipTM=0.544 tol=0.778
2024-05-06 16:14:10,833 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=70 pTM=0.732 ipTM=0.546 tol=0.495
2024-05-06 16:14:10,834 alphafold2_multimer_v3_model_5_seed_000 took 86.6s (7 recycles)
2024-05-06 16:14:11,169 reranking models by 'multimer' metric
2024-05-06 16:14:14,140 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-06 16:14:46,387 Relaxation took 35.2s
2024-05-06 16:14:46,388 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.5 pTM=0.754 ipTM=0.621
2024-05-06 16:15:08,680 Relaxation took 22.3s
2024-05-06 16:15:08,680 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=72.3 pTM=0.719 ipTM=0.558
2024-05-06 16:15:45,198 Relaxation took 36.5s
2024-05-06 16:15:45,198 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=70 pTM=0.732 ipTM=0.546
2024-05-06 16:16:30,728 Relaxation took 45.5s
2024-05-06 16:16:30,728 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=68.9 pTM=0.711 ipTM=0.454
2024-05-06 16:17:02,268 Relaxation took 31.5s
2024-05-06 16:17:02,268 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=70.6 pTM=0.705 ipTM=0.421
2024-05-06 16:17:03,680 Done