2024-05-06 18:21:52,473 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-06 18:21:52,791 Running on GPU
2024-05-06 18:21:56,407 Found 6 citations for tools or databases
2024-05-06 18:21:56,408 Query 1/1: CKS1B_SKP1 (length 242)
2024-05-06 18:21:56,888 Sleeping for 5s. Reason: PENDING
2024-05-06 18:22:02,308 Sleeping for 5s. Reason: RUNNING
2024-05-06 18:22:07,727 Sleeping for 8s. Reason: RUNNING
2024-05-06 18:22:16,161 Sleeping for 7s. Reason: RUNNING
2024-05-06 18:22:28,205 Sleeping for 6s. Reason: PENDING
2024-05-06 18:22:34,628 Sleeping for 6s. Reason: RUNNING
2024-05-06 18:22:42,600 Setting max_seq=508, max_extra_seq=2048
2024-05-06 18:25:10,551 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=60.6 pTM=0.489 ipTM=0.123
2024-05-06 18:25:12,880 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=59.2 pTM=0.466 ipTM=0.155 tol=1.52
2024-05-06 18:25:15,201 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=60.2 pTM=0.466 ipTM=0.142 tol=1.23
2024-05-06 18:25:17,521 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=61 pTM=0.471 ipTM=0.155 tol=1.07
2024-05-06 18:25:19,840 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=60.3 pTM=0.466 ipTM=0.171 tol=1.31
2024-05-06 18:25:22,161 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=60.6 pTM=0.474 ipTM=0.159 tol=0.863
2024-05-06 18:25:24,476 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=60.8 pTM=0.472 ipTM=0.177 tol=0.901
2024-05-06 18:25:26,795 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=60.3 pTM=0.475 ipTM=0.166 tol=0.833
2024-05-06 18:25:29,112 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=60.5 pTM=0.475 ipTM=0.18 tol=0.533
2024-05-06 18:25:31,431 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=60.8 pTM=0.483 ipTM=0.179 tol=0.789
2024-05-06 18:25:33,749 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=63.2 pTM=0.521 ipTM=0.239 tol=0.88
2024-05-06 18:25:36,067 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.5 pTM=0.521 ipTM=0.247 tol=0.722
2024-05-06 18:25:38,386 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=64.1 pTM=0.547 ipTM=0.303 tol=0.755
2024-05-06 18:25:40,705 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.2 pTM=0.513 ipTM=0.221 tol=0.948
2024-05-06 18:25:43,023 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61.8 pTM=0.511 ipTM=0.24 tol=0.615
2024-05-06 18:25:45,342 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.1 pTM=0.504 ipTM=0.22 tol=0.504
2024-05-06 18:25:47,660 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=63.2 pTM=0.533 ipTM=0.283 tol=0.617
2024-05-06 18:25:49,980 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=63.2 pTM=0.522 ipTM=0.243 tol=0.433
2024-05-06 18:25:49,980 alphafold2_multimer_v3_model_1_seed_000 took 182.2s (17 recycles)
2024-05-06 18:25:52,352 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=62.9 pTM=0.526 ipTM=0.126
2024-05-06 18:25:54,670 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=62.8 pTM=0.523 ipTM=0.171 tol=3.88
2024-05-06 18:25:56,987 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=64.2 pTM=0.523 ipTM=0.155 tol=2.45
2024-05-06 18:25:59,306 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=66.1 pTM=0.548 ipTM=0.216 tol=1.67
2024-05-06 18:26:01,625 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=67.9 pTM=0.575 ipTM=0.269 tol=1.45
2024-05-06 18:26:03,946 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=67.9 pTM=0.577 ipTM=0.22 tol=0.849
2024-05-06 18:26:06,264 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=65.9 pTM=0.562 ipTM=0.206 tol=0.636
2024-05-06 18:26:08,583 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=69.2 pTM=0.595 ipTM=0.306 tol=0.941
2024-05-06 18:26:10,904 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=67.2 pTM=0.58 ipTM=0.224 tol=1.1
2024-05-06 18:26:13,222 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=64.6 pTM=0.554 ipTM=0.213 tol=0.847
2024-05-06 18:26:15,539 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=66.1 pTM=0.571 ipTM=0.231 tol=0.327
2024-05-06 18:26:15,540 alphafold2_multimer_v3_model_2_seed_000 took 25.5s (10 recycles)
2024-05-06 18:26:17,909 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=60.2 pTM=0.544 ipTM=0.212
2024-05-06 18:26:20,229 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=66.7 pTM=0.56 ipTM=0.202 tol=4.48
2024-05-06 18:26:22,547 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=65.1 pTM=0.533 ipTM=0.16 tol=1.95
2024-05-06 18:26:24,866 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=65.4 pTM=0.539 ipTM=0.18 tol=2.71
2024-05-06 18:26:27,185 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=63 pTM=0.508 ipTM=0.171 tol=3.71
2024-05-06 18:26:29,506 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.2 pTM=0.544 ipTM=0.182 tol=2.4
2024-05-06 18:26:31,827 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=69 pTM=0.572 ipTM=0.212 tol=1.56
2024-05-06 18:26:34,150 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70.2 pTM=0.585 ipTM=0.268 tol=0.881
2024-05-06 18:26:36,471 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.1 pTM=0.549 ipTM=0.181 tol=1.43
2024-05-06 18:26:38,792 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.8 pTM=0.549 ipTM=0.18 tol=1.05
2024-05-06 18:26:41,113 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.5 pTM=0.545 ipTM=0.181 tol=1.01
2024-05-06 18:26:43,435 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=67.2 pTM=0.551 ipTM=0.187 tol=0.747
2024-05-06 18:26:45,755 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=65.9 pTM=0.538 ipTM=0.19 tol=0.653
2024-05-06 18:26:48,075 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=67.4 pTM=0.556 ipTM=0.216 tol=0.763
2024-05-06 18:26:50,396 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=69.1 pTM=0.571 ipTM=0.237 tol=0.781
2024-05-06 18:26:52,718 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.4 pTM=0.576 ipTM=0.239 tol=1.7
2024-05-06 18:26:55,038 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=69.4 pTM=0.568 ipTM=0.219 tol=1.11
2024-05-06 18:26:57,358 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=67 pTM=0.544 ipTM=0.187 tol=1.34
2024-05-06 18:26:59,679 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=67.6 pTM=0.546 ipTM=0.182 tol=1.16
2024-05-06 18:27:02,002 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68.2 pTM=0.566 ipTM=0.209 tol=0.983
2024-05-06 18:27:04,322 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=68.4 pTM=0.555 ipTM=0.192 tol=1.19
2024-05-06 18:27:06,643 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=67 pTM=0.554 ipTM=0.206 tol=0.863
2024-05-06 18:27:08,963 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=68.2 pTM=0.554 ipTM=0.2 tol=0.743
2024-05-06 18:27:11,285 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=68 pTM=0.56 ipTM=0.199 tol=1.08
2024-05-06 18:27:13,606 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=69.1 pTM=0.569 ipTM=0.229 tol=1.12
2024-05-06 18:27:15,927 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=67.1 pTM=0.553 ipTM=0.204 tol=1.35
2024-05-06 18:27:18,247 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=67.6 pTM=0.545 ipTM=0.198 tol=1.02
2024-05-06 18:27:20,567 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=66.2 pTM=0.539 ipTM=0.178 tol=0.794
2024-05-06 18:27:22,886 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=64.8 pTM=0.518 ipTM=0.171 tol=1.15
2024-05-06 18:27:25,207 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=66.7 pTM=0.556 ipTM=0.214 tol=1.62
2024-05-06 18:27:27,529 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=69.9 pTM=0.57 ipTM=0.207 tol=1.23
2024-05-06 18:27:27,529 alphafold2_multimer_v3_model_3_seed_000 took 71.9s (30 recycles)
2024-05-06 18:27:29,900 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.8 pTM=0.594 ipTM=0.293
2024-05-06 18:27:32,222 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66 pTM=0.575 ipTM=0.235 tol=5.7
2024-05-06 18:27:34,542 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=65.9 pTM=0.557 ipTM=0.217 tol=5.95
2024-05-06 18:27:36,862 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=66.1 pTM=0.568 ipTM=0.25 tol=1.14
2024-05-06 18:27:39,181 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=65.8 pTM=0.564 ipTM=0.293 tol=0.561
2024-05-06 18:27:41,500 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=66.8 pTM=0.581 ipTM=0.273 tol=0.572
2024-05-06 18:27:43,818 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.6 pTM=0.581 ipTM=0.284 tol=0.341
2024-05-06 18:27:43,818 alphafold2_multimer_v3_model_4_seed_000 took 16.2s (6 recycles)
2024-05-06 18:27:46,189 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=61.2 pTM=0.519 ipTM=0.174
2024-05-06 18:27:48,508 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=59.9 pTM=0.49 ipTM=0.157 tol=3.67
2024-05-06 18:27:50,827 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=63.7 pTM=0.539 ipTM=0.229 tol=1.81
2024-05-06 18:27:53,148 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=61.3 pTM=0.514 ipTM=0.187 tol=0.915
2024-05-06 18:27:55,468 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=61.1 pTM=0.503 ipTM=0.208 tol=0.63
2024-05-06 18:27:57,789 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=61 pTM=0.512 ipTM=0.179 tol=1.27
2024-05-06 18:28:00,108 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=63.5 pTM=0.527 ipTM=0.206 tol=1.92
2024-05-06 18:28:02,425 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=63.8 pTM=0.535 ipTM=0.217 tol=2.49
2024-05-06 18:28:04,744 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=60.9 pTM=0.515 ipTM=0.188 tol=1.4
2024-05-06 18:28:07,063 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.7 pTM=0.515 ipTM=0.209 tol=0.99
2024-05-06 18:28:09,383 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=61.9 pTM=0.52 ipTM=0.191 tol=1.39
2024-05-06 18:28:11,705 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62.6 pTM=0.526 ipTM=0.221 tol=1.48
2024-05-06 18:28:14,028 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=61.3 pTM=0.523 ipTM=0.203 tol=0.746
2024-05-06 18:28:16,347 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=60.7 pTM=0.517 ipTM=0.196 tol=0.832
2024-05-06 18:28:18,668 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=63 pTM=0.54 ipTM=0.245 tol=1.11
2024-05-06 18:28:20,987 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.3 pTM=0.536 ipTM=0.22 tol=0.66
2024-05-06 18:28:23,305 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=63.2 pTM=0.538 ipTM=0.266 tol=0.86
2024-05-06 18:28:25,626 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=61 pTM=0.519 ipTM=0.212 tol=1.08
2024-05-06 18:28:27,948 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=62.6 pTM=0.518 ipTM=0.234 tol=1.09
2024-05-06 18:28:30,271 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=61.1 pTM=0.512 ipTM=0.187 tol=1.24
2024-05-06 18:28:32,593 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=62.8 pTM=0.519 ipTM=0.212 tol=0.792
2024-05-06 18:28:34,911 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=60.2 pTM=0.497 ipTM=0.185 tol=0.749
2024-05-06 18:28:37,231 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=61.3 pTM=0.504 ipTM=0.191 tol=1.38
2024-05-06 18:28:39,551 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=63.5 pTM=0.534 ipTM=0.261 tol=1.44
2024-05-06 18:28:41,871 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=61.3 pTM=0.519 ipTM=0.182 tol=1.01
2024-05-06 18:28:44,191 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=63 pTM=0.527 ipTM=0.224 tol=1.06
2024-05-06 18:28:46,515 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=60.5 pTM=0.5 ipTM=0.187 tol=1.14
2024-05-06 18:28:48,835 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=62.8 pTM=0.507 ipTM=0.215 tol=1.6
2024-05-06 18:28:51,154 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=61.6 pTM=0.51 ipTM=0.193 tol=1.16
2024-05-06 18:28:53,473 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=63.2 pTM=0.516 ipTM=0.208 tol=0.903
2024-05-06 18:28:55,790 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=62.4 pTM=0.515 ipTM=0.18 tol=1.43
2024-05-06 18:28:55,790 alphafold2_multimer_v3_model_5_seed_000 took 71.9s (30 recycles)
2024-05-06 18:28:55,840 reranking models by 'multimer' metric
2024-05-06 18:28:56,386 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-06 18:29:05,909 Relaxation took 10.1s
2024-05-06 18:29:05,909 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66.6 pTM=0.581 ipTM=0.284
2024-05-06 18:29:10,901 Relaxation took 5.0s
2024-05-06 18:29:10,901 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=66.1 pTM=0.571 ipTM=0.231
2024-05-06 18:29:16,123 Relaxation took 5.2s
2024-05-06 18:29:16,123 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=63.2 pTM=0.522 ipTM=0.243
2024-05-06 18:29:20,755 Relaxation took 4.6s
2024-05-06 18:29:20,756 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.9 pTM=0.57 ipTM=0.207
2024-05-06 18:29:26,547 Relaxation took 5.8s
2024-05-06 18:29:26,547 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=62.4 pTM=0.515 ipTM=0.18
2024-05-06 18:29:27,391 Done