2024-05-06 18:30:05,886 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-06 18:30:06,355 Running on GPU
2024-05-06 18:30:10,108 Found 6 citations for tools or databases
2024-05-06 18:30:10,108 Query 1/1: CKS1B_SKP2 (length 503)
2024-05-06 18:30:17,188 Setting max_seq=508, max_extra_seq=2048
2024-05-06 18:33:45,973 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=70.9 pTM=0.653 ipTM=0.203
2024-05-06 18:33:53,395 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=72.9 pTM=0.69 ipTM=0.403 tol=4.49
2024-05-06 18:34:00,821 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=72.4 pTM=0.684 ipTM=0.34 tol=4.6
2024-05-06 18:34:08,246 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=72 pTM=0.677 ipTM=0.298 tol=3.31
2024-05-06 18:34:15,670 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.4 pTM=0.765 ipTM=0.838 tol=5.66
2024-05-06 18:34:23,090 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.8 pTM=0.767 ipTM=0.863 tol=3.17
2024-05-06 18:34:30,513 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.769 ipTM=0.869 tol=1.67
2024-05-06 18:34:37,937 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.9 pTM=0.769 ipTM=0.869 tol=1.42
2024-05-06 18:34:45,362 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.9 pTM=0.77 ipTM=0.87 tol=1
2024-05-06 18:34:52,793 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.9 pTM=0.77 ipTM=0.871 tol=1.35
2024-05-06 18:35:00,216 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=79.9 pTM=0.771 ipTM=0.872 tol=1.97
2024-05-06 18:35:07,641 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=80 pTM=0.772 ipTM=0.873 tol=3.94
2024-05-06 18:35:15,069 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.1 pTM=0.773 ipTM=0.874 tol=1.38
2024-05-06 18:35:22,500 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=80.2 pTM=0.775 ipTM=0.873 tol=1.72
2024-05-06 18:35:29,923 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.2 pTM=0.775 ipTM=0.874 tol=1.7
2024-05-06 18:35:37,346 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=80.4 pTM=0.777 ipTM=0.874 tol=0.942
2024-05-06 18:35:44,768 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=80.4 pTM=0.778 ipTM=0.876 tol=1.04
2024-05-06 18:35:52,173 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=80.4 pTM=0.776 ipTM=0.875 tol=0.713
2024-05-06 18:35:59,589 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=80.4 pTM=0.776 ipTM=0.873 tol=0.665
2024-05-06 18:36:07,010 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=80.5 pTM=0.777 ipTM=0.873 tol=0.92
2024-05-06 18:36:14,428 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=80.5 pTM=0.778 ipTM=0.873 tol=0.485
2024-05-06 18:36:14,429 alphafold2_multimer_v3_model_1_seed_000 took 347.5s (20 recycles)
2024-05-06 18:36:22,068 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72 pTM=0.686 ipTM=0.323
2024-05-06 18:36:29,498 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.1 pTM=0.7 ipTM=0.409 tol=11.3
2024-05-06 18:36:36,941 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.5 pTM=0.774 ipTM=0.863 tol=5.53
2024-05-06 18:36:44,395 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.9 pTM=0.774 ipTM=0.875 tol=4.18
2024-05-06 18:36:51,856 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.8 pTM=0.773 ipTM=0.875 tol=4.25
2024-05-06 18:36:59,317 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.9 pTM=0.774 ipTM=0.877 tol=3.94
2024-05-06 18:37:06,781 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80 pTM=0.775 ipTM=0.878 tol=2.5
2024-05-06 18:37:14,242 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.1 pTM=0.775 ipTM=0.878 tol=2.7
2024-05-06 18:37:21,690 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=80 pTM=0.774 ipTM=0.876 tol=1.62
2024-05-06 18:37:29,146 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=80.1 pTM=0.774 ipTM=0.875 tol=2.12
2024-05-06 18:37:36,603 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80 pTM=0.774 ipTM=0.876 tol=4.14
2024-05-06 18:37:44,064 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80 pTM=0.774 ipTM=0.877 tol=4.57
2024-05-06 18:37:51,530 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80 pTM=0.774 ipTM=0.878 tol=1.46
2024-05-06 18:37:58,988 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=80.2 pTM=0.775 ipTM=0.878 tol=1.46
2024-05-06 18:38:06,451 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80.1 pTM=0.775 ipTM=0.879 tol=1.5
2024-05-06 18:38:13,916 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=80.2 pTM=0.774 ipTM=0.879 tol=1.81
2024-05-06 18:38:21,385 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=80.2 pTM=0.775 ipTM=0.879 tol=1.28
2024-05-06 18:38:28,849 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=80.1 pTM=0.774 ipTM=0.877 tol=0.648
2024-05-06 18:38:36,310 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=80.1 pTM=0.774 ipTM=0.878 tol=3.55
2024-05-06 18:38:43,780 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=80.2 pTM=0.774 ipTM=0.878 tol=2.53
2024-05-06 18:38:51,243 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=80.1 pTM=0.775 ipTM=0.877 tol=4.3
2024-05-06 18:38:58,698 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=80.2 pTM=0.774 ipTM=0.878 tol=4.16
2024-05-06 18:39:06,163 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=80 pTM=0.775 ipTM=0.878 tol=8.7
2024-05-06 18:39:13,620 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=80 pTM=0.773 ipTM=0.877 tol=3.4
2024-05-06 18:39:21,088 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=80.1 pTM=0.774 ipTM=0.879 tol=4.04
2024-05-06 18:39:28,539 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=80.1 pTM=0.774 ipTM=0.878 tol=2.44
2024-05-06 18:39:35,983 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=80.1 pTM=0.774 ipTM=0.876 tol=2.57
2024-05-06 18:39:43,438 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=80.1 pTM=0.775 ipTM=0.88 tol=0.861
2024-05-06 18:39:50,911 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=80.2 pTM=0.775 ipTM=0.879 tol=1.84
2024-05-06 18:39:58,381 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=80.1 pTM=0.775 ipTM=0.879 tol=1.69
2024-05-06 18:40:05,838 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=80.1 pTM=0.775 ipTM=0.878 tol=1.77
2024-05-06 18:40:05,838 alphafold2_multimer_v3_model_2_seed_000 took 231.2s (30 recycles)
2024-05-06 18:40:13,585 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72 pTM=0.652 ipTM=0.178
2024-05-06 18:40:21,033 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.1 pTM=0.677 ipTM=0.296 tol=7.28
2024-05-06 18:40:28,471 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73 pTM=0.692 ipTM=0.388 tol=6.93
2024-05-06 18:40:35,908 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.2 pTM=0.745 ipTM=0.713 tol=7.16
2024-05-06 18:40:43,347 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.2 pTM=0.755 ipTM=0.774 tol=8.13
2024-05-06 18:40:50,810 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.4 pTM=0.772 ipTM=0.873 tol=4.8
2024-05-06 18:40:58,265 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.5 pTM=0.774 ipTM=0.877 tol=2.12
2024-05-06 18:41:05,729 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.7 pTM=0.775 ipTM=0.878 tol=2.37
2024-05-06 18:41:13,166 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.7 pTM=0.775 ipTM=0.878 tol=0.991
2024-05-06 18:41:20,614 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.9 pTM=0.776 ipTM=0.881 tol=0.98
2024-05-06 18:41:28,057 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.9 pTM=0.776 ipTM=0.881 tol=0.914
2024-05-06 18:41:35,503 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.9 pTM=0.776 ipTM=0.881 tol=0.696
2024-05-06 18:41:42,951 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.9 pTM=0.776 ipTM=0.881 tol=0.527
2024-05-06 18:41:50,414 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=79.9 pTM=0.778 ipTM=0.882 tol=0.626
2024-05-06 18:41:57,873 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.9 pTM=0.776 ipTM=0.881 tol=0.473
2024-05-06 18:41:57,873 alphafold2_multimer_v3_model_3_seed_000 took 111.8s (14 recycles)
2024-05-06 18:42:05,521 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.1 pTM=0.695 ipTM=0.408
2024-05-06 18:42:12,975 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.7 pTM=0.686 ipTM=0.316 tol=6.18
2024-05-06 18:42:20,431 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.2 pTM=0.767 ipTM=0.817 tol=6.67
2024-05-06 18:42:27,897 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.1 pTM=0.775 ipTM=0.873 tol=2.28
2024-05-06 18:42:35,377 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.2 pTM=0.777 ipTM=0.877 tol=2.4
2024-05-06 18:42:42,856 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.1 pTM=0.777 ipTM=0.878 tol=1.8
2024-05-06 18:42:50,316 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.1 pTM=0.776 ipTM=0.879 tol=1.13
2024-05-06 18:42:57,964 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.2 pTM=0.779 ipTM=0.878 tol=2.46
2024-05-06 18:43:05,436 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.2 pTM=0.78 ipTM=0.879 tol=0.857
2024-05-06 18:43:13,162 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.1 pTM=0.778 ipTM=0.877 tol=0.427
2024-05-06 18:43:13,163 alphafold2_multimer_v3_model_4_seed_000 took 75.1s (9 recycles)
2024-05-06 18:43:21,327 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71 pTM=0.672 ipTM=0.308
2024-05-06 18:43:29,196 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.1 pTM=0.685 ipTM=0.333 tol=6.37
2024-05-06 18:43:36,626 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.1 pTM=0.732 ipTM=0.622 tol=6.05
2024-05-06 18:43:44,077 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.8 pTM=0.771 ipTM=0.854 tol=2.75
2024-05-06 18:43:51,535 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.2 pTM=0.773 ipTM=0.869 tol=3.72
2024-05-06 18:43:59,012 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.4 pTM=0.775 ipTM=0.872 tol=1.72
2024-05-06 18:44:06,488 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.4 pTM=0.775 ipTM=0.875 tol=7.46
2024-05-06 18:44:13,957 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.778 ipTM=0.877 tol=2.77
2024-05-06 18:44:21,430 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.6 pTM=0.777 ipTM=0.875 tol=1.56
2024-05-06 18:44:29,258 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.8 pTM=0.778 ipTM=0.877 tol=2.58
2024-05-06 18:44:36,741 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.8 pTM=0.778 ipTM=0.878 tol=1.78
2024-05-06 18:44:44,225 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.8 pTM=0.778 ipTM=0.877 tol=3.28
2024-05-06 18:44:53,962 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.8 pTM=0.778 ipTM=0.878 tol=5.47
2024-05-06 18:45:01,971 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.9 pTM=0.78 ipTM=0.879 tol=2.44
2024-05-06 18:45:09,452 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.9 pTM=0.78 ipTM=0.878 tol=0.985
2024-05-06 18:45:16,930 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80 pTM=0.78 ipTM=0.879 tol=1.45
2024-05-06 18:45:24,417 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80 pTM=0.781 ipTM=0.88 tol=0.578
2024-05-06 18:45:31,902 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80 pTM=0.781 ipTM=0.878 tol=0.776
2024-05-06 18:45:39,385 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.9 pTM=0.78 ipTM=0.878 tol=1.44
2024-05-06 18:45:46,850 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.9 pTM=0.78 ipTM=0.877 tol=0.786
2024-05-06 18:45:54,331 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79.9 pTM=0.78 ipTM=0.877 tol=0.825
2024-05-06 18:46:01,815 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80 pTM=0.781 ipTM=0.88 tol=0.938
2024-05-06 18:46:09,277 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.9 pTM=0.78 ipTM=0.877 tol=0.692
2024-05-06 18:46:16,753 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.9 pTM=0.78 ipTM=0.876 tol=0.482
2024-05-06 18:46:16,753 alphafold2_multimer_v3_model_5_seed_000 took 183.4s (23 recycles)
2024-05-06 18:46:16,971 reranking models by 'multimer' metric
2024-05-06 18:46:19,764 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-06 18:46:47,943 Relaxation took 31.0s
2024-05-06 18:46:47,943 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.9 pTM=0.776 ipTM=0.881
2024-05-06 18:47:11,882 Relaxation took 23.9s
2024-05-06 18:47:11,882 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.1 pTM=0.778 ipTM=0.877
2024-05-06 18:47:43,839 Relaxation took 32.0s
2024-05-06 18:47:43,840 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.1 pTM=0.775 ipTM=0.878
2024-05-06 18:47:58,328 Relaxation took 14.5s
2024-05-06 18:47:58,328 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.9 pTM=0.78 ipTM=0.876
2024-05-06 18:48:13,810 Relaxation took 15.5s
2024-05-06 18:48:13,814 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.5 pTM=0.778 ipTM=0.873
2024-05-06 18:48:14,979 Done