2024-05-06 19:51:22,218 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-06 19:51:22,535 Running on GPU
2024-05-06 19:51:26,303 Found 6 citations for tools or databases
2024-05-06 19:51:26,303 Query 1/1: DNPEP_FBXO36 (length 663)
2024-05-06 19:51:46,948 Setting max_seq=508, max_extra_seq=2048
2024-05-06 19:54:33,558 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=85.7 pTM=0.701 ipTM=0.11
2024-05-06 19:54:42,416 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=85.1 pTM=0.705 ipTM=0.116 tol=4.11
2024-05-06 19:54:51,304 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.4 pTM=0.707 ipTM=0.116 tol=3.89
2024-05-06 19:55:00,202 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=84.9 pTM=0.708 ipTM=0.122 tol=2.19
2024-05-06 19:55:09,119 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85 pTM=0.708 ipTM=0.124 tol=0.911
2024-05-06 19:55:18,047 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.1 pTM=0.708 ipTM=0.125 tol=1.11
2024-05-06 19:55:26,974 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.9 pTM=0.71 ipTM=0.13 tol=1.29
2024-05-06 19:55:35,902 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.8 pTM=0.707 ipTM=0.12 tol=2.6
2024-05-06 19:55:44,849 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.8 pTM=0.708 ipTM=0.123 tol=4.64
2024-05-06 19:55:53,787 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=84.6 pTM=0.709 ipTM=0.127 tol=4.31
2024-05-06 19:56:02,739 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=85.1 pTM=0.707 ipTM=0.119 tol=2.36
2024-05-06 19:56:11,684 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.6 pTM=0.707 ipTM=0.118 tol=2.17
2024-05-06 19:56:20,625 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=85.1 pTM=0.706 ipTM=0.117 tol=2.18
2024-05-06 19:56:29,572 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=85.2 pTM=0.707 ipTM=0.119 tol=2.14
2024-05-06 19:56:38,531 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=84.6 pTM=0.707 ipTM=0.12 tol=2
2024-05-06 19:56:47,487 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=84.6 pTM=0.707 ipTM=0.12 tol=1.74
2024-05-06 19:56:56,465 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=84.6 pTM=0.708 ipTM=0.122 tol=0.64
2024-05-06 19:57:05,426 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=84.9 pTM=0.708 ipTM=0.12 tol=1.22
2024-05-06 19:57:14,383 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=84.6 pTM=0.708 ipTM=0.122 tol=1.25
2024-05-06 19:57:23,347 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=83.8 pTM=0.708 ipTM=0.122 tol=2.4
2024-05-06 19:57:32,315 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=84.8 pTM=0.708 ipTM=0.122 tol=1.85
2024-05-06 19:57:41,286 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=84.2 pTM=0.708 ipTM=0.121 tol=1.38
2024-05-06 19:57:50,243 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=84.8 pTM=0.707 ipTM=0.121 tol=2.02
2024-05-06 19:57:59,209 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=84.8 pTM=0.708 ipTM=0.121 tol=1.06
2024-05-06 19:58:08,169 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=84.2 pTM=0.708 ipTM=0.122 tol=1.14
2024-05-06 19:58:17,134 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=84.2 pTM=0.707 ipTM=0.12 tol=0.937
2024-05-06 19:58:26,091 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=85 pTM=0.708 ipTM=0.124 tol=2.31
2024-05-06 19:58:35,046 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=84.6 pTM=0.707 ipTM=0.121 tol=1.86
2024-05-06 19:58:44,011 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=84.5 pTM=0.708 ipTM=0.123 tol=0.838
2024-05-06 19:58:52,982 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.9 pTM=0.708 ipTM=0.124 tol=3.33
2024-05-06 19:59:01,945 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=85 pTM=0.708 ipTM=0.121 tol=3.37
2024-05-06 19:59:01,946 alphafold2_multimer_v3_model_1_seed_000 took 429.8s (30 recycles)
2024-05-06 19:59:11,144 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=86.5 pTM=0.698 ipTM=0.116
2024-05-06 19:59:20,092 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.5 pTM=0.71 ipTM=0.148 tol=7.27
2024-05-06 19:59:29,039 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=85.8 pTM=0.716 ipTM=0.157 tol=4.63
2024-05-06 19:59:37,998 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=86.4 pTM=0.711 ipTM=0.138 tol=0.759
2024-05-06 19:59:46,971 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=86.4 pTM=0.709 ipTM=0.128 tol=0.778
2024-05-06 19:59:55,957 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86.6 pTM=0.709 ipTM=0.125 tol=0.876
2024-05-06 20:00:04,935 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=86.5 pTM=0.708 ipTM=0.12 tol=2.71
2024-05-06 20:00:13,923 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=86.9 pTM=0.706 ipTM=0.111 tol=1.33
2024-05-06 20:00:22,911 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=87 pTM=0.707 ipTM=0.116 tol=1.05
2024-05-06 20:00:31,905 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=87.1 pTM=0.706 ipTM=0.109 tol=1.87
2024-05-06 20:00:40,878 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=87.1 pTM=0.707 ipTM=0.114 tol=1.58
2024-05-06 20:00:49,873 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=86.8 pTM=0.706 ipTM=0.11 tol=1.04
2024-05-06 20:00:58,863 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=87.1 pTM=0.705 ipTM=0.105 tol=7.13
2024-05-06 20:01:07,851 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=88.1 pTM=0.707 ipTM=0.12 tol=5.46
2024-05-06 20:01:16,814 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=88.6 pTM=0.712 ipTM=0.146 tol=3.35
2024-05-06 20:01:25,802 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=88.4 pTM=0.711 ipTM=0.142 tol=0.959
2024-05-06 20:01:34,787 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=88 pTM=0.708 ipTM=0.13 tol=1.3
2024-05-06 20:01:43,774 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=88.3 pTM=0.711 ipTM=0.142 tol=0.859
2024-05-06 20:01:52,761 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=88.3 pTM=0.713 ipTM=0.151 tol=0.68
2024-05-06 20:02:01,744 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=87.7 pTM=0.709 ipTM=0.13 tol=2.36
2024-05-06 20:02:10,726 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=87.9 pTM=0.711 ipTM=0.14 tol=0.93
2024-05-06 20:02:19,700 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=87.6 pTM=0.711 ipTM=0.138 tol=0.661
2024-05-06 20:02:28,675 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=87.6 pTM=0.708 ipTM=0.129 tol=1.27
2024-05-06 20:02:37,646 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=87.8 pTM=0.709 ipTM=0.133 tol=1.01
2024-05-06 20:02:46,624 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=87.7 pTM=0.71 ipTM=0.136 tol=1.07
2024-05-06 20:02:55,616 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=88 pTM=0.711 ipTM=0.137 tol=1.51
2024-05-06 20:03:04,601 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=87.7 pTM=0.709 ipTM=0.13 tol=1.09
2024-05-06 20:03:13,582 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=87.7 pTM=0.71 ipTM=0.135 tol=0.945
2024-05-06 20:03:22,572 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=87.6 pTM=0.709 ipTM=0.132 tol=0.918
2024-05-06 20:03:31,564 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=87.4 pTM=0.709 ipTM=0.131 tol=0.991
2024-05-06 20:03:40,553 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=87.8 pTM=0.709 ipTM=0.131 tol=0.953
2024-05-06 20:03:40,554 alphafold2_multimer_v3_model_2_seed_000 took 278.3s (30 recycles)
2024-05-06 20:03:49,667 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.7 pTM=0.696 ipTM=0.139
2024-05-06 20:03:58,483 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84 pTM=0.688 ipTM=0.108 tol=9.59
2024-05-06 20:04:07,290 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83 pTM=0.698 ipTM=0.149 tol=8.15
2024-05-06 20:04:16,084 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.5 pTM=0.692 ipTM=0.126 tol=4.1
2024-05-06 20:04:24,890 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=83.8 pTM=0.693 ipTM=0.124 tol=1.15
2024-05-06 20:04:33,682 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83.6 pTM=0.692 ipTM=0.123 tol=0.607
2024-05-06 20:04:42,494 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=83.4 pTM=0.691 ipTM=0.12 tol=1.56
2024-05-06 20:04:51,302 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=83.4 pTM=0.692 ipTM=0.124 tol=0.907
2024-05-06 20:05:00,112 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=83.5 pTM=0.691 ipTM=0.121 tol=1.08
2024-05-06 20:05:08,926 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=83.2 pTM=0.693 ipTM=0.129 tol=1.51
2024-05-06 20:05:17,745 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=83.4 pTM=0.692 ipTM=0.124 tol=0.397
2024-05-06 20:05:17,746 alphafold2_multimer_v3_model_3_seed_000 took 96.9s (10 recycles)
2024-05-06 20:05:26,955 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.6 pTM=0.699 ipTM=0.108
2024-05-06 20:05:35,867 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=85 pTM=0.704 ipTM=0.125 tol=5.09
2024-05-06 20:05:44,762 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.2 pTM=0.703 ipTM=0.128 tol=1.63
2024-05-06 20:05:53,664 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=84.2 pTM=0.705 ipTM=0.127 tol=2.27
2024-05-06 20:06:02,564 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.4 pTM=0.706 ipTM=0.132 tol=1.36
2024-05-06 20:06:11,467 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=85.1 pTM=0.706 ipTM=0.13 tol=2.92
2024-05-06 20:06:20,372 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.6 pTM=0.707 ipTM=0.136 tol=0.493
2024-05-06 20:06:20,373 alphafold2_multimer_v3_model_4_seed_000 took 62.3s (6 recycles)
2024-05-06 20:06:29,547 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=84.9 pTM=0.696 ipTM=0.104
2024-05-06 20:06:38,410 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=84.7 pTM=0.705 ipTM=0.141 tol=6.73
2024-05-06 20:06:47,257 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83.9 pTM=0.699 ipTM=0.125 tol=3.05
2024-05-06 20:06:56,116 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.1 pTM=0.699 ipTM=0.128 tol=0.99
2024-05-06 20:07:04,977 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=84.1 pTM=0.701 ipTM=0.13 tol=0.252
2024-05-06 20:07:04,978 alphafold2_multimer_v3_model_5_seed_000 took 44.3s (4 recycles)
2024-05-06 20:07:05,259 reranking models by 'multimer' metric
2024-05-06 20:07:08,447 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-06 20:07:31,403 Relaxation took 26.1s
2024-05-06 20:07:31,403 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=84.6 pTM=0.707 ipTM=0.136
2024-05-06 20:07:46,645 Relaxation took 15.2s
2024-05-06 20:07:46,646 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=87.8 pTM=0.709 ipTM=0.131
2024-05-06 20:08:05,471 Relaxation took 18.8s
2024-05-06 20:08:05,471 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=84.1 pTM=0.701 ipTM=0.13
2024-05-06 20:08:51,441 Relaxation took 46.0s
2024-05-06 20:08:51,441 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85 pTM=0.708 ipTM=0.121
2024-05-06 20:09:12,347 Relaxation took 20.9s
2024-05-06 20:09:12,347 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=83.4 pTM=0.692 ipTM=0.124
2024-05-06 20:09:13,577 Done