2024-05-07 01:16:11,755 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-07 01:16:12,166 Running on GPU
2024-05-07 01:16:14,385 Found 6 citations for tools or databases
2024-05-07 01:16:14,385 Query 1/1: ID3_WDR5 (length 453)
2024-05-07 01:16:47,288 Setting max_seq=508, max_extra_seq=2048
2024-05-07 01:19:40,630 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.1 pTM=0.705 ipTM=0.225
2024-05-07 01:19:45,398 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.8 pTM=0.718 ipTM=0.25 tol=3.17
2024-05-07 01:19:50,164 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.6 pTM=0.717 ipTM=0.544 tol=2.99
2024-05-07 01:19:54,918 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.2 pTM=0.709 ipTM=0.392 tol=3.49
2024-05-07 01:19:59,685 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.7 pTM=0.713 ipTM=0.335 tol=2.56
2024-05-07 01:20:04,448 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.9 pTM=0.718 ipTM=0.412 tol=1.44
2024-05-07 01:20:09,213 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76 pTM=0.714 ipTM=0.419 tol=0.875
2024-05-07 01:20:13,977 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.9 pTM=0.711 ipTM=0.453 tol=0.791
2024-05-07 01:20:18,747 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.8 pTM=0.708 ipTM=0.452 tol=0.997
2024-05-07 01:20:23,511 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.7 pTM=0.707 ipTM=0.468 tol=0.422
2024-05-07 01:20:23,511 alphafold2_multimer_v3_model_1_seed_000 took 211.1s (9 recycles)
2024-05-07 01:20:28,414 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.5 pTM=0.7 ipTM=0.205
2024-05-07 01:20:33,177 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=75.5 pTM=0.722 ipTM=0.251 tol=3.06
2024-05-07 01:20:37,936 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75 pTM=0.711 ipTM=0.262 tol=3.24
2024-05-07 01:20:42,685 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.1 pTM=0.705 ipTM=0.238 tol=1.16
2024-05-07 01:20:47,442 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.6 pTM=0.708 ipTM=0.349 tol=2.26
2024-05-07 01:20:52,202 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75.4 pTM=0.705 ipTM=0.424 tol=5.26
2024-05-07 01:20:56,963 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75.7 pTM=0.703 ipTM=0.416 tol=1.98
2024-05-07 01:21:01,719 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.5 pTM=0.702 ipTM=0.415 tol=1.54
2024-05-07 01:21:06,483 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.8 pTM=0.702 ipTM=0.394 tol=1.11
2024-05-07 01:21:11,247 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=75.8 pTM=0.702 ipTM=0.398 tol=0.885
2024-05-07 01:21:16,008 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=75.6 pTM=0.699 ipTM=0.365 tol=0.752
2024-05-07 01:21:20,762 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=75.4 pTM=0.697 ipTM=0.33 tol=0.842
2024-05-07 01:21:25,522 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=75.8 pTM=0.703 ipTM=0.381 tol=0.936
2024-05-07 01:21:30,281 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=75.6 pTM=0.7 ipTM=0.357 tol=0.73
2024-05-07 01:21:35,045 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=76.1 pTM=0.7 ipTM=0.37 tol=0.59
2024-05-07 01:21:39,800 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=75.9 pTM=0.698 ipTM=0.376 tol=0.816
2024-05-07 01:21:44,557 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=75.9 pTM=0.698 ipTM=0.366 tol=0.75
2024-05-07 01:21:49,315 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=76.1 pTM=0.698 ipTM=0.408 tol=0.742
2024-05-07 01:21:54,075 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=75.9 pTM=0.697 ipTM=0.397 tol=2.22
2024-05-07 01:21:58,834 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=75.9 pTM=0.697 ipTM=0.411 tol=9.09
2024-05-07 01:22:03,600 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=75.9 pTM=0.696 ipTM=0.349 tol=2.98
2024-05-07 01:22:08,349 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.1 pTM=0.697 ipTM=0.404 tol=2.73
2024-05-07 01:22:13,093 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=75.9 pTM=0.699 ipTM=0.405 tol=3.94
2024-05-07 01:22:17,845 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=76.4 pTM=0.697 ipTM=0.391 tol=1.77
2024-05-07 01:22:22,592 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=75.9 pTM=0.699 ipTM=0.388 tol=1.04
2024-05-07 01:22:27,340 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.4 pTM=0.699 ipTM=0.394 tol=1.19
2024-05-07 01:22:32,081 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=75.8 pTM=0.697 ipTM=0.334 tol=1.08
2024-05-07 01:22:36,821 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=76.4 pTM=0.698 ipTM=0.367 tol=0.844
2024-05-07 01:22:41,573 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=76 pTM=0.698 ipTM=0.373 tol=0.537
2024-05-07 01:22:46,317 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=76.4 pTM=0.696 ipTM=0.362 tol=1.35
2024-05-07 01:22:51,076 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=75.8 pTM=0.695 ipTM=0.323 tol=7.87
2024-05-07 01:22:51,077 alphafold2_multimer_v3_model_2_seed_000 took 147.4s (30 recycles)
2024-05-07 01:22:55,988 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.5 pTM=0.7 ipTM=0.197
2024-05-07 01:23:00,765 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.3 pTM=0.71 ipTM=0.292 tol=5.04
2024-05-07 01:23:05,543 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77 pTM=0.719 ipTM=0.569 tol=2.98
2024-05-07 01:23:10,315 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.8 pTM=0.714 ipTM=0.48 tol=1.19
2024-05-07 01:23:15,087 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.9 pTM=0.719 ipTM=0.499 tol=1
2024-05-07 01:23:19,857 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.7 pTM=0.715 ipTM=0.475 tol=0.732
2024-05-07 01:23:24,632 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.8 pTM=0.719 ipTM=0.48 tol=0.483
2024-05-07 01:23:24,632 alphafold2_multimer_v3_model_3_seed_000 took 33.4s (6 recycles)
2024-05-07 01:23:29,525 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.1 pTM=0.69 ipTM=0.175
2024-05-07 01:23:34,300 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.6 pTM=0.71 ipTM=0.206 tol=12.1
2024-05-07 01:23:39,081 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.9 pTM=0.714 ipTM=0.537 tol=4.45
2024-05-07 01:23:43,847 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76 pTM=0.713 ipTM=0.427 tol=3.49
2024-05-07 01:23:48,614 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=76.2 pTM=0.717 ipTM=0.458 tol=2.84
2024-05-07 01:23:53,384 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.1 pTM=0.716 ipTM=0.434 tol=0.95
2024-05-07 01:23:58,159 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.2 pTM=0.717 ipTM=0.489 tol=0.706
2024-05-07 01:24:02,927 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76.2 pTM=0.716 ipTM=0.457 tol=0.501
2024-05-07 01:24:07,700 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.2 pTM=0.718 ipTM=0.469 tol=0.738
2024-05-07 01:24:12,467 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=76.2 pTM=0.717 ipTM=0.458 tol=0.483
2024-05-07 01:24:12,467 alphafold2_multimer_v3_model_4_seed_000 took 47.7s (9 recycles)
2024-05-07 01:24:17,372 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.4 pTM=0.69 ipTM=0.166
2024-05-07 01:24:22,153 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.5 pTM=0.699 ipTM=0.172 tol=10.5
2024-05-07 01:24:26,947 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.9 pTM=0.704 ipTM=0.531 tol=13.9
2024-05-07 01:24:31,733 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.8 pTM=0.71 ipTM=0.405 tol=5.02
2024-05-07 01:24:36,521 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.7 pTM=0.707 ipTM=0.395 tol=2.12
2024-05-07 01:24:41,311 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.9 pTM=0.709 ipTM=0.474 tol=1.31
2024-05-07 01:24:46,099 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.9 pTM=0.708 ipTM=0.449 tol=1.2
2024-05-07 01:24:50,888 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.9 pTM=0.707 ipTM=0.464 tol=1.1
2024-05-07 01:24:55,684 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.1 pTM=0.708 ipTM=0.472 tol=1.19
2024-05-07 01:25:00,476 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.2 pTM=0.709 ipTM=0.492 tol=1.09
2024-05-07 01:25:05,268 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.9 pTM=0.71 ipTM=0.458 tol=1.18
2024-05-07 01:25:10,056 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.9 pTM=0.708 ipTM=0.47 tol=0.948
2024-05-07 01:25:14,850 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.1 pTM=0.708 ipTM=0.446 tol=1.05
2024-05-07 01:25:19,636 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76 pTM=0.708 ipTM=0.455 tol=0.651
2024-05-07 01:25:24,427 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=76.1 pTM=0.708 ipTM=0.445 tol=0.981
2024-05-07 01:25:29,206 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=76 pTM=0.709 ipTM=0.453 tol=0.574
2024-05-07 01:25:34,000 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=76 pTM=0.708 ipTM=0.447 tol=0.559
2024-05-07 01:25:38,787 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=76.1 pTM=0.708 ipTM=0.46 tol=0.441
2024-05-07 01:25:38,788 alphafold2_multimer_v3_model_5_seed_000 took 86.2s (17 recycles)
2024-05-07 01:25:38,935 reranking models by 'multimer' metric
2024-05-07 01:25:40,246 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-07 01:25:54,426 Relaxation took 15.5s
2024-05-07 01:25:54,426 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.8 pTM=0.719 ipTM=0.48
2024-05-07 01:26:07,784 Relaxation took 13.4s
2024-05-07 01:26:07,785 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=75.7 pTM=0.707 ipTM=0.468
2024-05-07 01:26:18,358 Relaxation took 10.6s
2024-05-07 01:26:18,358 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.1 pTM=0.708 ipTM=0.46
2024-05-07 01:26:28,456 Relaxation took 10.1s
2024-05-07 01:26:28,456 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.2 pTM=0.717 ipTM=0.458
2024-05-07 01:26:50,222 Relaxation took 21.8s
2024-05-07 01:26:50,223 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.8 pTM=0.695 ipTM=0.323
2024-05-07 01:26:51,200 Done