2024-05-07 04:39:55,491 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-07 04:39:55,858 Running on GPU
2024-05-07 04:39:59,721 Found 6 citations for tools or databases
2024-05-07 04:39:59,721 Query 1/1: SERINC3_FBXL12 (length 799)
2024-05-07 04:40:04,885 Setting max_seq=508, max_extra_seq=2048
2024-05-07 04:43:40,883 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74 pTM=0.537 ipTM=0.207
2024-05-07 04:43:56,983 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.8 pTM=0.601 ipTM=0.355 tol=4.7
2024-05-07 04:44:13,101 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=76.9 pTM=0.608 ipTM=0.39 tol=0.707
2024-05-07 04:44:29,244 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.3 pTM=0.603 ipTM=0.371 tol=0.85
2024-05-07 04:44:45,389 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.6 pTM=0.607 ipTM=0.386 tol=0.464
2024-05-07 04:44:45,390 alphafold2_multimer_v3_model_1_seed_000 took 273.0s (4 recycles)
2024-05-07 04:45:02,109 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.8 pTM=0.536 ipTM=0.195
2024-05-07 04:45:18,345 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.9 pTM=0.546 ipTM=0.203 tol=2.29
2024-05-07 04:45:34,608 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.9 pTM=0.524 ipTM=0.172 tol=2.13
2024-05-07 04:45:50,869 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.9 pTM=0.531 ipTM=0.19 tol=1.4
2024-05-07 04:46:07,116 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.6 pTM=0.538 ipTM=0.202 tol=1.09
2024-05-07 04:46:23,374 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.6 pTM=0.529 ipTM=0.19 tol=1.22
2024-05-07 04:46:39,626 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.6 pTM=0.531 ipTM=0.193 tol=0.698
2024-05-07 04:46:55,872 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.6 pTM=0.531 ipTM=0.197 tol=0.446
2024-05-07 04:46:55,872 alphafold2_multimer_v3_model_2_seed_000 took 130.0s (7 recycles)
2024-05-07 04:47:12,596 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.7 pTM=0.557 ipTM=0.287
2024-05-07 04:47:28,802 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.6 pTM=0.591 ipTM=0.362 tol=1.76
2024-05-07 04:47:44,994 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.9 pTM=0.61 ipTM=0.423 tol=0.807
2024-05-07 04:48:01,185 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.8 pTM=0.599 ipTM=0.388 tol=0.317
2024-05-07 04:48:01,186 alphafold2_multimer_v3_model_3_seed_000 took 64.8s (3 recycles)
2024-05-07 04:48:17,906 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=73.3 pTM=0.533 ipTM=0.229
2024-05-07 04:48:34,127 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.2 pTM=0.55 ipTM=0.226 tol=2.58
2024-05-07 04:48:50,331 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.4 pTM=0.554 ipTM=0.241 tol=1.2
2024-05-07 04:49:06,555 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.8 pTM=0.55 ipTM=0.222 tol=0.549
2024-05-07 04:49:22,787 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.7 pTM=0.543 ipTM=0.208 tol=1.15
2024-05-07 04:49:39,014 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.9 pTM=0.538 ipTM=0.195 tol=0.405
2024-05-07 04:49:39,015 alphafold2_multimer_v3_model_4_seed_000 took 97.3s (5 recycles)
2024-05-07 04:49:55,737 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.9 pTM=0.531 ipTM=0.276
2024-05-07 04:50:11,947 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=75.4 pTM=0.561 ipTM=0.269 tol=1.97
2024-05-07 04:50:28,135 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76 pTM=0.604 ipTM=0.39 tol=1.59
2024-05-07 04:50:44,337 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.3 pTM=0.581 ipTM=0.329 tol=0.83
2024-05-07 04:51:00,546 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76 pTM=0.556 ipTM=0.269 tol=0.689
2024-05-07 04:51:16,766 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.8 pTM=0.542 ipTM=0.242 tol=0.817
2024-05-07 04:51:32,984 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.8 pTM=0.534 ipTM=0.221 tol=0.78
2024-05-07 04:51:49,220 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.8 pTM=0.533 ipTM=0.218 tol=0.56
2024-05-07 04:52:05,455 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.1 pTM=0.529 ipTM=0.203 tol=0.834
2024-05-07 04:52:21,699 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75.6 pTM=0.527 ipTM=0.203 tol=0.989
2024-05-07 04:52:37,944 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.8 pTM=0.523 ipTM=0.19 tol=1.43
2024-05-07 04:52:54,189 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.4 pTM=0.524 ipTM=0.192 tol=1.42
2024-05-07 04:53:10,442 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76 pTM=0.528 ipTM=0.2 tol=1.13
2024-05-07 04:53:26,683 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=75.8 pTM=0.526 ipTM=0.194 tol=0.796
2024-05-07 04:53:42,921 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=75.6 pTM=0.523 ipTM=0.195 tol=0.615
2024-05-07 04:53:59,159 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=76 pTM=0.53 ipTM=0.203 tol=0.491
2024-05-07 04:53:59,160 alphafold2_multimer_v3_model_5_seed_000 took 259.6s (15 recycles)
2024-05-07 04:53:59,695 reranking models by 'multimer' metric
2024-05-07 04:54:02,920 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-07 04:54:35,250 Relaxation took 35.6s
2024-05-07 04:54:35,250 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.6 pTM=0.607 ipTM=0.386
2024-05-07 04:55:02,470 Relaxation took 27.2s
2024-05-07 04:55:02,471 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.8 pTM=0.599 ipTM=0.388
2024-05-07 04:56:10,593 Relaxation took 68.1s
2024-05-07 04:56:10,593 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76 pTM=0.53 ipTM=0.203
2024-05-07 04:57:34,171 Relaxation took 83.6s
2024-05-07 04:57:34,172 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.9 pTM=0.538 ipTM=0.195
2024-05-07 04:59:03,605 Relaxation took 89.4s
2024-05-07 04:59:03,605 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.6 pTM=0.531 ipTM=0.197
2024-05-07 04:59:05,399 Done