2024-05-07 04:59:44,275 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-07 04:59:44,620 Running on GPU
2024-05-07 04:59:48,269 Found 6 citations for tools or databases
2024-05-07 04:59:48,269 Query 1/1: SKP1_FBXO33 (length 718)
2024-05-07 04:59:53,239 Setting max_seq=508, max_extra_seq=2048
2024-05-07 05:02:31,379 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.7 pTM=0.785 ipTM=0.913
2024-05-07 05:02:41,874 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=82.8 pTM=0.816 ipTM=0.924 tol=1.87
2024-05-07 05:02:52,354 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.8 pTM=0.816 ipTM=0.922 tol=1.55
2024-05-07 05:03:02,839 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=82.8 pTM=0.813 ipTM=0.923 tol=1.05
2024-05-07 05:03:13,294 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=82.6 pTM=0.809 ipTM=0.919 tol=0.515
2024-05-07 05:03:23,749 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=82.5 pTM=0.808 ipTM=0.918 tol=0.665
2024-05-07 05:03:34,241 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=82.5 pTM=0.809 ipTM=0.919 tol=1.03
2024-05-07 05:03:44,690 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82.2 pTM=0.806 ipTM=0.918 tol=1.17
2024-05-07 05:03:55,186 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=82.6 pTM=0.81 ipTM=0.92 tol=0.9
2024-05-07 05:04:05,690 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=82.6 pTM=0.811 ipTM=0.922 tol=0.689
2024-05-07 05:04:16,196 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=82.7 pTM=0.811 ipTM=0.922 tol=0.434
2024-05-07 05:04:16,197 alphafold2_multimer_v3_model_1_seed_000 took 257.7s (10 recycles)
2024-05-07 05:04:26,975 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.2 pTM=0.748 ipTM=0.905
2024-05-07 05:04:37,524 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=82.3 pTM=0.809 ipTM=0.923 tol=3.46
2024-05-07 05:04:48,025 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=82.2 pTM=0.81 ipTM=0.922 tol=2.93
2024-05-07 05:04:58,509 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=82.2 pTM=0.805 ipTM=0.921 tol=1.43
2024-05-07 05:05:08,996 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.1 pTM=0.803 ipTM=0.919 tol=0.501
2024-05-07 05:05:19,471 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=82 pTM=0.801 ipTM=0.917 tol=0.485
2024-05-07 05:05:19,472 alphafold2_multimer_v3_model_2_seed_000 took 62.9s (5 recycles)
2024-05-07 05:05:30,263 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.8 pTM=0.743 ipTM=0.904
2024-05-07 05:05:40,864 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=82.1 pTM=0.808 ipTM=0.923 tol=9.38
2024-05-07 05:05:51,404 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=82 pTM=0.807 ipTM=0.924 tol=3.76
2024-05-07 05:06:01,913 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.8 pTM=0.804 ipTM=0.923 tol=2
2024-05-07 05:06:12,426 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.1 pTM=0.806 ipTM=0.922 tol=1.18
2024-05-07 05:06:22,926 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.9 pTM=0.804 ipTM=0.92 tol=0.586
2024-05-07 05:06:33,440 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.1 pTM=0.807 ipTM=0.925 tol=0.511
2024-05-07 05:06:43,930 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.9 pTM=0.805 ipTM=0.921 tol=0.45
2024-05-07 05:06:43,930 alphafold2_multimer_v3_model_3_seed_000 took 84.1s (7 recycles)
2024-05-07 05:06:54,730 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.9 pTM=0.771 ipTM=0.909
2024-05-07 05:07:05,331 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=82.8 pTM=0.809 ipTM=0.931 tol=3.84
2024-05-07 05:07:15,897 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=82.6 pTM=0.812 ipTM=0.929 tol=1.28
2024-05-07 05:07:26,454 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=82.6 pTM=0.81 ipTM=0.93 tol=0.741
2024-05-07 05:07:36,995 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=82.4 pTM=0.809 ipTM=0.928 tol=0.716
2024-05-07 05:07:47,549 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=82.6 pTM=0.811 ipTM=0.93 tol=1.09
2024-05-07 05:07:58,112 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=82.6 pTM=0.811 ipTM=0.931 tol=1.44
2024-05-07 05:08:08,651 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=82.4 pTM=0.809 ipTM=0.93 tol=1.46
2024-05-07 05:08:19,213 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.6 pTM=0.81 ipTM=0.931 tol=0.881
2024-05-07 05:08:29,721 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=82.2 pTM=0.807 ipTM=0.928 tol=0.801
2024-05-07 05:08:40,254 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.6 pTM=0.81 ipTM=0.932 tol=1.36
2024-05-07 05:08:50,795 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=82.6 pTM=0.811 ipTM=0.931 tol=3.37
2024-05-07 05:09:01,339 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=82.3 pTM=0.81 ipTM=0.929 tol=2.66
2024-05-07 05:09:11,870 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=82.3 pTM=0.808 ipTM=0.93 tol=1.59
2024-05-07 05:09:22,415 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.4 pTM=0.809 ipTM=0.93 tol=0.878
2024-05-07 05:09:32,955 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=82.6 pTM=0.811 ipTM=0.931 tol=0.362
2024-05-07 05:09:32,956 alphafold2_multimer_v3_model_4_seed_000 took 168.7s (15 recycles)
2024-05-07 05:09:43,743 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.5 pTM=0.773 ipTM=0.914
2024-05-07 05:09:54,339 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.8 pTM=0.819 ipTM=0.927 tol=3.85
2024-05-07 05:10:04,907 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.5 pTM=0.816 ipTM=0.925 tol=0.612
2024-05-07 05:10:15,463 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.6 pTM=0.814 ipTM=0.926 tol=0.57
2024-05-07 05:10:26,021 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.4 pTM=0.813 ipTM=0.924 tol=0.301
2024-05-07 05:10:26,021 alphafold2_multimer_v3_model_5_seed_000 took 52.7s (4 recycles)
2024-05-07 05:10:26,346 reranking models by 'multimer' metric
2024-05-07 05:10:29,491 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-07 05:10:50,509 Relaxation took 24.2s
2024-05-07 05:10:50,510 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.6 pTM=0.811 ipTM=0.931
2024-05-07 05:11:12,500 Relaxation took 22.0s
2024-05-07 05:11:12,500 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=82.4 pTM=0.813 ipTM=0.924
2024-05-07 05:11:33,691 Relaxation took 21.2s
2024-05-07 05:11:33,692 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=82.7 pTM=0.811 ipTM=0.922
2024-05-07 05:12:00,399 Relaxation took 26.7s
2024-05-07 05:12:00,399 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.9 pTM=0.805 ipTM=0.921
2024-05-07 05:12:29,170 Relaxation took 28.8s
2024-05-07 05:12:29,170 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82 pTM=0.801 ipTM=0.917
2024-05-07 05:12:30,479 Done