2024-05-07 05:13:09,497 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-07 05:13:09,889 Running on GPU
2024-05-07 05:13:13,534 Found 6 citations for tools or databases
2024-05-07 05:13:13,534 Query 1/1: SKP1_FBXW12 (length 627)
2024-05-07 05:13:26,158 Setting max_seq=508, max_extra_seq=2048
2024-05-07 05:16:59,699 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=86.1 pTM=0.841 ipTM=0.896
2024-05-07 05:17:10,536 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=87.4 pTM=0.842 ipTM=0.89 tol=0.766
2024-05-07 05:17:21,340 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=87.1 pTM=0.823 ipTM=0.887 tol=0.54
2024-05-07 05:17:32,154 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=87.4 pTM=0.822 ipTM=0.889 tol=0.385
2024-05-07 05:17:32,155 alphafold2_multimer_v3_model_1_seed_000 took 238.9s (3 recycles)
2024-05-07 05:17:43,293 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=85 pTM=0.824 ipTM=0.902
2024-05-07 05:17:54,172 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=88.6 pTM=0.849 ipTM=0.901 tol=1.16
2024-05-07 05:18:05,011 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=88.2 pTM=0.834 ipTM=0.899 tol=0.254
2024-05-07 05:18:05,012 alphafold2_multimer_v3_model_2_seed_000 took 32.5s (2 recycles)
2024-05-07 05:18:16,183 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=87.1 pTM=0.833 ipTM=0.9
2024-05-07 05:18:27,075 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=88.9 pTM=0.846 ipTM=0.906 tol=0.928
2024-05-07 05:18:37,921 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=88.3 pTM=0.839 ipTM=0.903 tol=0.35
2024-05-07 05:18:37,922 alphafold2_multimer_v3_model_3_seed_000 took 32.6s (2 recycles)
2024-05-07 05:18:49,077 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=86 pTM=0.834 ipTM=0.889
2024-05-07 05:18:59,953 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88.4 pTM=0.852 ipTM=0.902 tol=0.729
2024-05-07 05:19:10,794 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=88.2 pTM=0.839 ipTM=0.899 tol=0.264
2024-05-07 05:19:10,795 alphafold2_multimer_v3_model_4_seed_000 took 32.6s (2 recycles)
2024-05-07 05:19:21,961 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=86.1 pTM=0.83 ipTM=0.894
2024-05-07 05:19:32,861 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=88.4 pTM=0.858 ipTM=0.908 tol=1.76
2024-05-07 05:19:43,727 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=87.8 pTM=0.832 ipTM=0.901 tol=0.298
2024-05-07 05:19:43,728 alphafold2_multimer_v3_model_5_seed_000 took 32.6s (2 recycles)
2024-05-07 05:19:44,051 reranking models by 'multimer' metric
2024-05-07 05:19:45,986 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-07 05:20:16,375 Relaxation took 32.3s
2024-05-07 05:20:16,375 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=88.3 pTM=0.839 ipTM=0.903
2024-05-07 05:20:34,085 Relaxation took 17.7s
2024-05-07 05:20:34,086 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=87.8 pTM=0.832 ipTM=0.901
2024-05-07 05:20:55,101 Relaxation took 21.0s
2024-05-07 05:20:55,101 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=88.2 pTM=0.839 ipTM=0.899
2024-05-07 05:21:17,918 Relaxation took 22.8s
2024-05-07 05:21:17,918 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=88.2 pTM=0.834 ipTM=0.899
2024-05-07 05:21:38,735 Relaxation took 20.8s
2024-05-07 05:21:38,735 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=87.4 pTM=0.822 ipTM=0.889
2024-05-07 05:21:40,113 Done