2024-05-07 19:26:37,979 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-05-07 19:26:42,258 Running on GPU
2024-05-07 19:26:52,182 Found 6 citations for tools or databases
2024-05-07 19:26:52,182 Query 1/1: APBB1IP (length 172)
2024-05-07 19:26:55,654 Setting max_seq=512, max_extra_seq=1020
2024-05-07 19:29:17,410 alphafold2_ptm_model_1_seed_000 recycle=0 pLDDT=67.1 pTM=0.254
2024-05-07 19:29:19,028 alphafold2_ptm_model_1_seed_000 recycle=1 pLDDT=66.9 pTM=0.271 tol=5.36
2024-05-07 19:29:20,640 alphafold2_ptm_model_1_seed_000 recycle=2 pLDDT=67.5 pTM=0.278 tol=2.34
2024-05-07 19:29:22,253 alphafold2_ptm_model_1_seed_000 recycle=3 pLDDT=67.4 pTM=0.286 tol=2.57
2024-05-07 19:29:23,866 alphafold2_ptm_model_1_seed_000 recycle=4 pLDDT=67.8 pTM=0.291 tol=1.08
2024-05-07 19:29:25,478 alphafold2_ptm_model_1_seed_000 recycle=5 pLDDT=67.6 pTM=0.292 tol=1.18
2024-05-07 19:29:27,089 alphafold2_ptm_model_1_seed_000 recycle=6 pLDDT=67.9 pTM=0.296 tol=1.56
2024-05-07 19:29:28,702 alphafold2_ptm_model_1_seed_000 recycle=7 pLDDT=67.5 pTM=0.29 tol=1.66
2024-05-07 19:29:30,317 alphafold2_ptm_model_1_seed_000 recycle=8 pLDDT=67.6 pTM=0.292 tol=1.3
2024-05-07 19:29:31,931 alphafold2_ptm_model_1_seed_000 recycle=9 pLDDT=67.9 pTM=0.299 tol=1.65
2024-05-07 19:29:33,545 alphafold2_ptm_model_1_seed_000 recycle=10 pLDDT=67.9 pTM=0.301 tol=1.16
2024-05-07 19:29:35,159 alphafold2_ptm_model_1_seed_000 recycle=11 pLDDT=68.2 pTM=0.3 tol=1.38
2024-05-07 19:29:36,773 alphafold2_ptm_model_1_seed_000 recycle=12 pLDDT=67.8 pTM=0.296 tol=2.05
2024-05-07 19:29:38,388 alphafold2_ptm_model_1_seed_000 recycle=13 pLDDT=67.7 pTM=0.295 tol=1.62
2024-05-07 19:29:40,001 alphafold2_ptm_model_1_seed_000 recycle=14 pLDDT=67.6 pTM=0.297 tol=1.67
2024-05-07 19:29:41,614 alphafold2_ptm_model_1_seed_000 recycle=15 pLDDT=68.2 pTM=0.303 tol=2.24
2024-05-07 19:29:43,229 alphafold2_ptm_model_1_seed_000 recycle=16 pLDDT=68 pTM=0.3 tol=1.58
2024-05-07 19:29:44,843 alphafold2_ptm_model_1_seed_000 recycle=17 pLDDT=67.8 pTM=0.297 tol=1.31
2024-05-07 19:29:46,457 alphafold2_ptm_model_1_seed_000 recycle=18 pLDDT=68.1 pTM=0.299 tol=1.66
2024-05-07 19:29:48,071 alphafold2_ptm_model_1_seed_000 recycle=19 pLDDT=67.9 pTM=0.3 tol=1.63
2024-05-07 19:29:49,686 alphafold2_ptm_model_1_seed_000 recycle=20 pLDDT=68.4 pTM=0.304 tol=1.96
2024-05-07 19:29:51,300 alphafold2_ptm_model_1_seed_000 recycle=21 pLDDT=68.1 pTM=0.299 tol=1.37
2024-05-07 19:29:52,914 alphafold2_ptm_model_1_seed_000 recycle=22 pLDDT=68 pTM=0.301 tol=1.63
2024-05-07 19:29:54,527 alphafold2_ptm_model_1_seed_000 recycle=23 pLDDT=68.3 pTM=0.302 tol=1.33
2024-05-07 19:29:56,142 alphafold2_ptm_model_1_seed_000 recycle=24 pLDDT=68.1 pTM=0.303 tol=1.3
2024-05-07 19:29:57,756 alphafold2_ptm_model_1_seed_000 recycle=25 pLDDT=67.9 pTM=0.302 tol=1.65
2024-05-07 19:29:59,371 alphafold2_ptm_model_1_seed_000 recycle=26 pLDDT=67.8 pTM=0.297 tol=1.04
2024-05-07 19:30:00,985 alphafold2_ptm_model_1_seed_000 recycle=27 pLDDT=68 pTM=0.297 tol=1.59
2024-05-07 19:30:02,599 alphafold2_ptm_model_1_seed_000 recycle=28 pLDDT=67.9 pTM=0.296 tol=1.77
2024-05-07 19:30:04,213 alphafold2_ptm_model_1_seed_000 recycle=29 pLDDT=68.1 pTM=0.299 tol=1.88
2024-05-07 19:30:05,827 alphafold2_ptm_model_1_seed_000 recycle=30 pLDDT=68.2 pTM=0.3 tol=1.26
2024-05-07 19:30:05,827 alphafold2_ptm_model_1_seed_000 took 146.1s (30 recycles)
2024-05-07 19:30:07,476 alphafold2_ptm_model_2_seed_000 recycle=0 pLDDT=67.2 pTM=0.241
2024-05-07 19:30:09,092 alphafold2_ptm_model_2_seed_000 recycle=1 pLDDT=66.9 pTM=0.244 tol=7.55
2024-05-07 19:30:10,709 alphafold2_ptm_model_2_seed_000 recycle=2 pLDDT=66.9 pTM=0.245 tol=3.43
2024-05-07 19:30:12,325 alphafold2_ptm_model_2_seed_000 recycle=3 pLDDT=66.9 pTM=0.246 tol=3.54
2024-05-07 19:30:13,943 alphafold2_ptm_model_2_seed_000 recycle=4 pLDDT=66.8 pTM=0.247 tol=2.18
2024-05-07 19:30:15,559 alphafold2_ptm_model_2_seed_000 recycle=5 pLDDT=66.8 pTM=0.247 tol=1.78
2024-05-07 19:30:17,176 alphafold2_ptm_model_2_seed_000 recycle=6 pLDDT=66.9 pTM=0.248 tol=1.77
2024-05-07 19:30:18,792 alphafold2_ptm_model_2_seed_000 recycle=7 pLDDT=66.9 pTM=0.247 tol=1.14
2024-05-07 19:30:20,408 alphafold2_ptm_model_2_seed_000 recycle=8 pLDDT=66.8 pTM=0.247 tol=1.42
2024-05-07 19:30:22,024 alphafold2_ptm_model_2_seed_000 recycle=9 pLDDT=66.6 pTM=0.248 tol=1.07
2024-05-07 19:30:23,640 alphafold2_ptm_model_2_seed_000 recycle=10 pLDDT=66.9 pTM=0.248 tol=1.57
2024-05-07 19:30:25,256 alphafold2_ptm_model_2_seed_000 recycle=11 pLDDT=67.4 pTM=0.251 tol=1.94
2024-05-07 19:30:26,873 alphafold2_ptm_model_2_seed_000 recycle=12 pLDDT=66.9 pTM=0.25 tol=1.15
2024-05-07 19:30:28,488 alphafold2_ptm_model_2_seed_000 recycle=13 pLDDT=66.8 pTM=0.25 tol=1.37
2024-05-07 19:30:30,106 alphafold2_ptm_model_2_seed_000 recycle=14 pLDDT=66.6 pTM=0.25 tol=2.47
2024-05-07 19:30:31,721 alphafold2_ptm_model_2_seed_000 recycle=15 pLDDT=66.8 pTM=0.251 tol=1.19
2024-05-07 19:30:33,338 alphafold2_ptm_model_2_seed_000 recycle=16 pLDDT=66.9 pTM=0.251 tol=0.949
2024-05-07 19:30:34,953 alphafold2_ptm_model_2_seed_000 recycle=17 pLDDT=66.9 pTM=0.25 tol=0.398
2024-05-07 19:30:34,953 alphafold2_ptm_model_2_seed_000 took 29.1s (17 recycles)
2024-05-07 19:30:36,599 alphafold2_ptm_model_3_seed_000 recycle=0 pLDDT=62.7 pTM=0.217
2024-05-07 19:30:38,215 alphafold2_ptm_model_3_seed_000 recycle=1 pLDDT=62.1 pTM=0.217 tol=4.17
2024-05-07 19:30:39,831 alphafold2_ptm_model_3_seed_000 recycle=2 pLDDT=62.1 pTM=0.217 tol=3.03
2024-05-07 19:30:41,446 alphafold2_ptm_model_3_seed_000 recycle=3 pLDDT=62.1 pTM=0.217 tol=2.19
2024-05-07 19:30:43,063 alphafold2_ptm_model_3_seed_000 recycle=4 pLDDT=62.3 pTM=0.218 tol=1.46
2024-05-07 19:30:44,678 alphafold2_ptm_model_3_seed_000 recycle=5 pLDDT=62.6 pTM=0.218 tol=1.9
2024-05-07 19:30:46,294 alphafold2_ptm_model_3_seed_000 recycle=6 pLDDT=62.6 pTM=0.22 tol=1.58
2024-05-07 19:30:47,909 alphafold2_ptm_model_3_seed_000 recycle=7 pLDDT=62.4 pTM=0.218 tol=1.78
2024-05-07 19:30:49,524 alphafold2_ptm_model_3_seed_000 recycle=8 pLDDT=62.6 pTM=0.217 tol=1.56
2024-05-07 19:30:51,140 alphafold2_ptm_model_3_seed_000 recycle=9 pLDDT=62.3 pTM=0.217 tol=1.86
2024-05-07 19:30:52,756 alphafold2_ptm_model_3_seed_000 recycle=10 pLDDT=62.5 pTM=0.219 tol=2.29
2024-05-07 19:30:54,371 alphafold2_ptm_model_3_seed_000 recycle=11 pLDDT=62.8 pTM=0.219 tol=2.35
2024-05-07 19:30:55,988 alphafold2_ptm_model_3_seed_000 recycle=12 pLDDT=62.7 pTM=0.217 tol=2.63
2024-05-07 19:30:57,603 alphafold2_ptm_model_3_seed_000 recycle=13 pLDDT=62.3 pTM=0.217 tol=2.12
2024-05-07 19:30:59,219 alphafold2_ptm_model_3_seed_000 recycle=14 pLDDT=62.2 pTM=0.216 tol=1.65
2024-05-07 19:31:00,835 alphafold2_ptm_model_3_seed_000 recycle=15 pLDDT=62.6 pTM=0.219 tol=2.42
2024-05-07 19:31:02,451 alphafold2_ptm_model_3_seed_000 recycle=16 pLDDT=61.9 pTM=0.216 tol=1.68
2024-05-07 19:31:04,066 alphafold2_ptm_model_3_seed_000 recycle=17 pLDDT=62.2 pTM=0.219 tol=1.51
2024-05-07 19:31:05,683 alphafold2_ptm_model_3_seed_000 recycle=18 pLDDT=62.4 pTM=0.218 tol=2.17
2024-05-07 19:31:07,298 alphafold2_ptm_model_3_seed_000 recycle=19 pLDDT=62.7 pTM=0.218 tol=2.3
2024-05-07 19:31:08,914 alphafold2_ptm_model_3_seed_000 recycle=20 pLDDT=62.7 pTM=0.216 tol=2.28
2024-05-07 19:31:10,529 alphafold2_ptm_model_3_seed_000 recycle=21 pLDDT=62.5 pTM=0.216 tol=2.04
2024-05-07 19:31:12,146 alphafold2_ptm_model_3_seed_000 recycle=22 pLDDT=62.3 pTM=0.217 tol=2.22
2024-05-07 19:31:13,761 alphafold2_ptm_model_3_seed_000 recycle=23 pLDDT=62.7 pTM=0.218 tol=1.63
2024-05-07 19:31:15,377 alphafold2_ptm_model_3_seed_000 recycle=24 pLDDT=62.6 pTM=0.219 tol=1.78
2024-05-07 19:31:16,992 alphafold2_ptm_model_3_seed_000 recycle=25 pLDDT=62.6 pTM=0.219 tol=1.9
2024-05-07 19:31:18,608 alphafold2_ptm_model_3_seed_000 recycle=26 pLDDT=62.5 pTM=0.218 tol=1.98
2024-05-07 19:31:20,223 alphafold2_ptm_model_3_seed_000 recycle=27 pLDDT=62.7 pTM=0.219 tol=1.94
2024-05-07 19:31:21,839 alphafold2_ptm_model_3_seed_000 recycle=28 pLDDT=62.5 pTM=0.219 tol=1.78
2024-05-07 19:31:23,455 alphafold2_ptm_model_3_seed_000 recycle=29 pLDDT=62.2 pTM=0.217 tol=1.78
2024-05-07 19:31:25,071 alphafold2_ptm_model_3_seed_000 recycle=30 pLDDT=62.4 pTM=0.219 tol=1.43
2024-05-07 19:31:25,071 alphafold2_ptm_model_3_seed_000 took 50.1s (30 recycles)
2024-05-07 19:31:26,720 alphafold2_ptm_model_4_seed_000 recycle=0 pLDDT=66.2 pTM=0.249
2024-05-07 19:31:28,339 alphafold2_ptm_model_4_seed_000 recycle=1 pLDDT=66.6 pTM=0.253 tol=6.34
2024-05-07 19:31:29,958 alphafold2_ptm_model_4_seed_000 recycle=2 pLDDT=66.8 pTM=0.256 tol=2.57
2024-05-07 19:31:31,576 alphafold2_ptm_model_4_seed_000 recycle=3 pLDDT=67.1 pTM=0.255 tol=3.35
2024-05-07 19:31:33,196 alphafold2_ptm_model_4_seed_000 recycle=4 pLDDT=66.9 pTM=0.255 tol=3.62
2024-05-07 19:31:34,814 alphafold2_ptm_model_4_seed_000 recycle=5 pLDDT=67.2 pTM=0.258 tol=3.04
2024-05-07 19:31:36,434 alphafold2_ptm_model_4_seed_000 recycle=6 pLDDT=66.9 pTM=0.256 tol=3.01
2024-05-07 19:31:38,052 alphafold2_ptm_model_4_seed_000 recycle=7 pLDDT=67.1 pTM=0.26 tol=3.21
2024-05-07 19:31:39,671 alphafold2_ptm_model_4_seed_000 recycle=8 pLDDT=67 pTM=0.255 tol=3.23
2024-05-07 19:31:41,290 alphafold2_ptm_model_4_seed_000 recycle=9 pLDDT=67.1 pTM=0.258 tol=2.44
2024-05-07 19:31:42,909 alphafold2_ptm_model_4_seed_000 recycle=10 pLDDT=67.1 pTM=0.262 tol=1.48
2024-05-07 19:31:44,528 alphafold2_ptm_model_4_seed_000 recycle=11 pLDDT=67.1 pTM=0.259 tol=2.15
2024-05-07 19:31:46,147 alphafold2_ptm_model_4_seed_000 recycle=12 pLDDT=67.1 pTM=0.259 tol=1.93
2024-05-07 19:31:47,761 alphafold2_ptm_model_4_seed_000 recycle=13 pLDDT=66.9 pTM=0.257 tol=2.49
2024-05-07 19:31:49,376 alphafold2_ptm_model_4_seed_000 recycle=14 pLDDT=66.6 pTM=0.255 tol=2.15
2024-05-07 19:31:50,990 alphafold2_ptm_model_4_seed_000 recycle=15 pLDDT=66.9 pTM=0.257 tol=2.13
2024-05-07 19:31:52,605 alphafold2_ptm_model_4_seed_000 recycle=16 pLDDT=67 pTM=0.257 tol=3.04
2024-05-07 19:31:54,219 alphafold2_ptm_model_4_seed_000 recycle=17 pLDDT=67.1 pTM=0.258 tol=2.76
2024-05-07 19:31:55,834 alphafold2_ptm_model_4_seed_000 recycle=18 pLDDT=67.1 pTM=0.258 tol=1.66
2024-05-07 19:31:57,448 alphafold2_ptm_model_4_seed_000 recycle=19 pLDDT=67.1 pTM=0.255 tol=2.24
2024-05-07 19:31:59,063 alphafold2_ptm_model_4_seed_000 recycle=20 pLDDT=67.2 pTM=0.258 tol=2.14
2024-05-07 19:32:00,677 alphafold2_ptm_model_4_seed_000 recycle=21 pLDDT=66.9 pTM=0.256 tol=2.45
2024-05-07 19:32:02,292 alphafold2_ptm_model_4_seed_000 recycle=22 pLDDT=66.9 pTM=0.257 tol=2.94
2024-05-07 19:32:03,906 alphafold2_ptm_model_4_seed_000 recycle=23 pLDDT=67.1 pTM=0.257 tol=1.83
2024-05-07 19:32:05,521 alphafold2_ptm_model_4_seed_000 recycle=24 pLDDT=67 pTM=0.258 tol=1.43
2024-05-07 19:32:07,134 alphafold2_ptm_model_4_seed_000 recycle=25 pLDDT=67.1 pTM=0.255 tol=1.82
2024-05-07 19:32:08,749 alphafold2_ptm_model_4_seed_000 recycle=26 pLDDT=66.9 pTM=0.258 tol=1.91
2024-05-07 19:32:10,363 alphafold2_ptm_model_4_seed_000 recycle=27 pLDDT=67.2 pTM=0.258 tol=1.86
2024-05-07 19:32:11,978 alphafold2_ptm_model_4_seed_000 recycle=28 pLDDT=67.3 pTM=0.257 tol=2.02
2024-05-07 19:32:13,592 alphafold2_ptm_model_4_seed_000 recycle=29 pLDDT=67.2 pTM=0.257 tol=1.35
2024-05-07 19:32:15,207 alphafold2_ptm_model_4_seed_000 recycle=30 pLDDT=66.7 pTM=0.26 tol=1.94
2024-05-07 19:32:15,207 alphafold2_ptm_model_4_seed_000 took 50.1s (30 recycles)
2024-05-07 19:32:16,850 alphafold2_ptm_model_5_seed_000 recycle=0 pLDDT=65.7 pTM=0.242
2024-05-07 19:32:18,463 alphafold2_ptm_model_5_seed_000 recycle=1 pLDDT=65.8 pTM=0.247 tol=7.37
2024-05-07 19:32:20,076 alphafold2_ptm_model_5_seed_000 recycle=2 pLDDT=66.2 pTM=0.25 tol=6.44
2024-05-07 19:32:21,688 alphafold2_ptm_model_5_seed_000 recycle=3 pLDDT=66.6 pTM=0.253 tol=2.43
2024-05-07 19:32:23,301 alphafold2_ptm_model_5_seed_000 recycle=4 pLDDT=66.4 pTM=0.256 tol=2.78
2024-05-07 19:32:24,913 alphafold2_ptm_model_5_seed_000 recycle=5 pLDDT=66.9 pTM=0.259 tol=2.84
2024-05-07 19:32:26,525 alphafold2_ptm_model_5_seed_000 recycle=6 pLDDT=66.9 pTM=0.262 tol=2.43
2024-05-07 19:32:28,137 alphafold2_ptm_model_5_seed_000 recycle=7 pLDDT=66.7 pTM=0.26 tol=2.56
2024-05-07 19:32:29,750 alphafold2_ptm_model_5_seed_000 recycle=8 pLDDT=66.8 pTM=0.258 tol=1.81
2024-05-07 19:32:31,362 alphafold2_ptm_model_5_seed_000 recycle=9 pLDDT=66.6 pTM=0.258 tol=1.68
2024-05-07 19:32:32,975 alphafold2_ptm_model_5_seed_000 recycle=10 pLDDT=67.1 pTM=0.263 tol=2.74
2024-05-07 19:32:34,587 alphafold2_ptm_model_5_seed_000 recycle=11 pLDDT=67.9 pTM=0.267 tol=2.15
2024-05-07 19:32:36,200 alphafold2_ptm_model_5_seed_000 recycle=12 pLDDT=67.2 pTM=0.261 tol=2.89
2024-05-07 19:32:37,813 alphafold2_ptm_model_5_seed_000 recycle=13 pLDDT=66.7 pTM=0.259 tol=2.13
2024-05-07 19:32:39,425 alphafold2_ptm_model_5_seed_000 recycle=14 pLDDT=66.8 pTM=0.259 tol=1.91
2024-05-07 19:32:41,038 alphafold2_ptm_model_5_seed_000 recycle=15 pLDDT=66.9 pTM=0.26 tol=1.7
2024-05-07 19:32:42,651 alphafold2_ptm_model_5_seed_000 recycle=16 pLDDT=67.1 pTM=0.261 tol=2.42
2024-05-07 19:32:44,262 alphafold2_ptm_model_5_seed_000 recycle=17 pLDDT=66.7 pTM=0.258 tol=2.69
2024-05-07 19:32:45,875 alphafold2_ptm_model_5_seed_000 recycle=18 pLDDT=67 pTM=0.26 tol=2.35
2024-05-07 19:32:47,487 alphafold2_ptm_model_5_seed_000 recycle=19 pLDDT=67.5 pTM=0.264 tol=2.6
2024-05-07 19:32:49,099 alphafold2_ptm_model_5_seed_000 recycle=20 pLDDT=67.6 pTM=0.263 tol=2.18
2024-05-07 19:32:50,711 alphafold2_ptm_model_5_seed_000 recycle=21 pLDDT=67.1 pTM=0.261 tol=2.48
2024-05-07 19:32:52,324 alphafold2_ptm_model_5_seed_000 recycle=22 pLDDT=67.1 pTM=0.26 tol=2.13
2024-05-07 19:32:53,936 alphafold2_ptm_model_5_seed_000 recycle=23 pLDDT=67.2 pTM=0.259 tol=3.37
2024-05-07 19:32:55,549 alphafold2_ptm_model_5_seed_000 recycle=24 pLDDT=67.1 pTM=0.26 tol=2.21
2024-05-07 19:32:57,160 alphafold2_ptm_model_5_seed_000 recycle=25 pLDDT=67.3 pTM=0.264 tol=2.18
2024-05-07 19:32:58,773 alphafold2_ptm_model_5_seed_000 recycle=26 pLDDT=67.3 pTM=0.26 tol=2.95
2024-05-07 19:33:00,384 alphafold2_ptm_model_5_seed_000 recycle=27 pLDDT=67.6 pTM=0.26 tol=1.77
2024-05-07 19:33:01,998 alphafold2_ptm_model_5_seed_000 recycle=28 pLDDT=67.2 pTM=0.261 tol=2.39
2024-05-07 19:33:03,609 alphafold2_ptm_model_5_seed_000 recycle=29 pLDDT=67.5 pTM=0.26 tol=2.48
2024-05-07 19:33:05,221 alphafold2_ptm_model_5_seed_000 recycle=30 pLDDT=67.1 pTM=0.26 tol=2.46
2024-05-07 19:33:05,221 alphafold2_ptm_model_5_seed_000 took 50.0s (30 recycles)
2024-05-07 19:33:05,251 reranking models by 'plddt' metric
2024-05-07 19:33:15,297 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-05-07 19:33:22,667 Relaxation took 17.4s
2024-05-07 19:33:22,667 rank_001_alphafold2_ptm_model_1_seed_000 pLDDT=68.2 pTM=0.3
2024-05-07 19:33:25,629 Relaxation took 3.0s
2024-05-07 19:33:25,629 rank_002_alphafold2_ptm_model_5_seed_000 pLDDT=67.1 pTM=0.26
2024-05-07 19:33:28,721 Relaxation took 3.1s
2024-05-07 19:33:28,722 rank_003_alphafold2_ptm_model_2_seed_000 pLDDT=66.9 pTM=0.25
2024-05-07 19:33:31,721 Relaxation took 3.0s
2024-05-07 19:33:31,721 rank_004_alphafold2_ptm_model_4_seed_000 pLDDT=66.7 pTM=0.26
2024-05-07 19:33:34,782 Relaxation took 3.1s
2024-05-07 19:33:34,782 rank_005_alphafold2_ptm_model_3_seed_000 pLDDT=62.4 pTM=0.219
2024-05-07 19:33:35,675 Done