2024-07-25 15:50:25,740 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:27,044 Running on GPU 2024-07-25 15:50:30,652 Found 6 citations for tools or databases 2024-07-25 15:50:30,652 Query 1/1: AASDHPPT_FBXO6 (length 602) 2024-07-25 15:50:37,179 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,206 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,234 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,261 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,288 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,315 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,342 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,369 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,396 Timeout while fetching result from MSA server. 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Retrying... 2024-07-25 15:55:06,318 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:57:43,162 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.9 pTM=0.547 ipTM=0.215 2024-07-25 15:57:50,659 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.7 pTM=0.543 ipTM=0.194 tol=2.59 2024-07-25 15:57:58,173 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.2 pTM=0.575 ipTM=0.271 tol=6.45 2024-07-25 15:58:05,701 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.7 pTM=0.553 ipTM=0.213 tol=4.46 2024-07-25 15:58:13,202 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.9 pTM=0.545 ipTM=0.206 tol=2.7 2024-07-25 15:58:20,704 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.9 pTM=0.545 ipTM=0.206 tol=0.478 2024-07-25 15:58:20,705 alphafold2_multimer_v3_model_1_seed_000 took 189.2s (5 recycles) 2024-07-25 15:58:28,445 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80 pTM=0.527 ipTM=0.17 2024-07-25 15:58:35,949 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.1 pTM=0.539 ipTM=0.187 tol=6.16 2024-07-25 15:58:43,464 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.8 pTM=0.534 ipTM=0.179 tol=1.23 2024-07-25 15:58:50,983 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.2 pTM=0.529 ipTM=0.17 tol=2.89 2024-07-25 15:58:58,508 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.3 pTM=0.531 ipTM=0.176 tol=0.776 2024-07-25 15:59:06,033 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.4 pTM=0.533 ipTM=0.176 tol=1.55 2024-07-25 15:59:13,562 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.7 pTM=0.541 ipTM=0.189 tol=1.96 2024-07-25 15:59:21,085 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.7 pTM=0.538 ipTM=0.186 tol=0.37 2024-07-25 15:59:21,086 alphafold2_multimer_v3_model_2_seed_000 took 60.1s (7 recycles) 2024-07-25 15:59:28,826 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.4 pTM=0.525 ipTM=0.177 2024-07-25 15:59:36,339 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.2 pTM=0.559 ipTM=0.226 tol=6.33 2024-07-25 15:59:43,872 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.8 pTM=0.549 ipTM=0.207 tol=7.88 2024-07-25 15:59:51,400 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.9 pTM=0.547 ipTM=0.202 tol=2.05 2024-07-25 15:59:58,927 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.2 pTM=0.55 ipTM=0.21 tol=0.833 2024-07-25 16:00:06,447 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.9 pTM=0.55 ipTM=0.211 tol=0.681 2024-07-25 16:00:13,980 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.7 pTM=0.56 ipTM=0.234 tol=0.662 2024-07-25 16:00:21,504 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.1 pTM=0.552 ipTM=0.217 tol=0.628 2024-07-25 16:00:29,030 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.6 pTM=0.556 ipTM=0.228 tol=0.523 2024-07-25 16:00:36,556 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.1 pTM=0.554 ipTM=0.218 tol=0.543 2024-07-25 16:00:44,082 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.6 pTM=0.553 ipTM=0.219 tol=0.693 2024-07-25 16:00:51,605 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.8 pTM=0.551 ipTM=0.221 tol=0.75 2024-07-25 16:00:59,135 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.6 pTM=0.545 ipTM=0.204 tol=0.542 2024-07-25 16:01:06,657 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.5 pTM=0.549 ipTM=0.208 tol=0.321 2024-07-25 16:01:06,658 alphafold2_multimer_v3_model_3_seed_000 took 105.3s (13 recycles) 2024-07-25 16:01:14,409 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.7 pTM=0.535 ipTM=0.187 2024-07-25 16:01:21,940 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=78.6 pTM=0.548 ipTM=0.206 tol=10.3 2024-07-25 16:01:29,474 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.9 pTM=0.53 ipTM=0.163 tol=2.74 2024-07-25 16:01:37,007 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.9 pTM=0.534 ipTM=0.18 tol=2.08 2024-07-25 16:01:44,551 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.4 pTM=0.528 ipTM=0.158 tol=2.97 2024-07-25 16:01:52,098 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.8 pTM=0.531 ipTM=0.173 tol=1.92 2024-07-25 16:01:59,641 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.6 pTM=0.527 ipTM=0.165 tol=2.36 2024-07-25 16:02:07,187 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.2 pTM=0.529 ipTM=0.159 tol=1.23 2024-07-25 16:02:14,731 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.7 pTM=0.527 ipTM=0.165 tol=0.986 2024-07-25 16:02:22,278 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.1 pTM=0.524 ipTM=0.153 tol=0.651 2024-07-25 16:02:29,826 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.7 pTM=0.525 ipTM=0.156 tol=0.77 2024-07-25 16:02:37,363 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.9 pTM=0.524 ipTM=0.151 tol=0.554 2024-07-25 16:02:44,910 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.6 pTM=0.524 ipTM=0.154 tol=0.318 2024-07-25 16:02:44,910 alphafold2_multimer_v3_model_4_seed_000 took 98.0s (12 recycles) 2024-07-25 16:02:52,652 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.526 ipTM=0.178 2024-07-25 16:03:00,186 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.3 pTM=0.551 ipTM=0.206 tol=2.92 2024-07-25 16:03:07,734 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.9 pTM=0.565 ipTM=0.229 tol=3.16 2024-07-25 16:03:15,285 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.9 pTM=0.552 ipTM=0.204 tol=1.37 2024-07-25 16:03:22,868 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.9 pTM=0.556 ipTM=0.214 tol=0.79 2024-07-25 16:03:30,431 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.2 pTM=0.547 ipTM=0.196 tol=0.55 2024-07-25 16:03:38,011 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.1 pTM=0.56 ipTM=0.223 tol=0.724 2024-07-25 16:03:45,580 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.4 pTM=0.55 ipTM=0.198 tol=0.257 2024-07-25 16:03:45,580 alphafold2_multimer_v3_model_5_seed_000 took 60.4s (7 recycles) 2024-07-25 16:03:45,818 reranking models by 'multimer' metric 2024-07-25 16:03:48,810 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 16:04:22,042 Relaxation took 36.2s 2024-07-25 16:04:22,042 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.5 pTM=0.549 ipTM=0.208 2024-07-25 16:04:36,898 Relaxation took 14.9s 2024-07-25 16:04:36,899 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.9 pTM=0.545 ipTM=0.206 2024-07-25 16:04:51,041 Relaxation took 14.1s 2024-07-25 16:04:51,041 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.4 pTM=0.55 ipTM=0.198 2024-07-25 16:05:22,433 Relaxation took 31.4s 2024-07-25 16:05:22,434 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.7 pTM=0.538 ipTM=0.186 2024-07-25 16:05:45,925 Relaxation took 23.5s 2024-07-25 16:05:45,925 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.6 pTM=0.524 ipTM=0.154 2024-07-25 16:05:47,084 Done