2024-07-25 15:50:25,740 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:27,045 Running on GPU 2024-07-25 15:50:30,652 Found 6 citations for tools or databases 2024-07-25 15:50:30,652 Query 1/1: ABI2_FBXO42 (length 1192) 2024-07-25 15:50:37,191 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,219 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,246 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,273 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,300 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,327 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,354 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,382 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,409 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:31,436 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:37,463 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:43,491 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:49,518 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:55,545 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:01,572 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:09,244 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:15,272 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:21,300 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:27,327 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:33,354 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:39,381 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:45,408 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:51,435 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:57,462 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:03,490 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:09,517 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:15,544 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:21,571 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:27,593 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:33,621 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:40,053 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:46,080 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:52,107 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:58,135 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:04,162 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:10,189 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:16,216 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:22,243 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:28,270 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:34,297 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:40,324 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:46,351 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:52,378 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:58,405 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:04,432 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:07,987 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:57:34,588 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=46.5 pTM=0.44 ipTM=0.368 2024-07-25 15:58:06,769 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=47.5 pTM=0.438 ipTM=0.228 tol=12.9 2024-07-25 15:58:38,999 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=47.7 pTM=0.438 ipTM=0.221 tol=8.93 2024-07-25 15:59:11,329 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=47.7 pTM=0.437 ipTM=0.216 tol=6.08 2024-07-25 15:59:43,715 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=47.7 pTM=0.436 ipTM=0.223 tol=6.1 2024-07-25 16:00:16,124 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=47.5 pTM=0.436 ipTM=0.241 tol=5.68 2024-07-25 16:00:48,545 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=47.8 pTM=0.436 ipTM=0.241 tol=4.19 2024-07-25 16:01:20,971 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=47.6 pTM=0.435 ipTM=0.242 tol=6.11 2024-07-25 16:01:53,410 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=47.7 pTM=0.438 ipTM=0.249 tol=3.2 2024-07-25 16:02:25,847 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=47.7 pTM=0.438 ipTM=0.246 tol=7.88 2024-07-25 16:02:58,269 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=47.7 pTM=0.439 ipTM=0.246 tol=5.82 2024-07-25 16:03:30,719 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=47.3 pTM=0.437 ipTM=0.245 tol=7.09 2024-07-25 16:04:03,176 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=47.4 pTM=0.437 ipTM=0.243 tol=2.68 2024-07-25 16:04:35,661 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=47.4 pTM=0.438 ipTM=0.246 tol=7.02 2024-07-25 16:05:08,102 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=47.4 pTM=0.438 ipTM=0.244 tol=4.67 2024-07-25 16:05:40,547 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=47.2 pTM=0.436 ipTM=0.241 tol=5.73 2024-07-25 16:06:12,988 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=47.5 pTM=0.437 ipTM=0.244 tol=5.28 2024-07-25 16:06:45,444 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=47.6 pTM=0.437 ipTM=0.253 tol=4.77 2024-07-25 16:07:17,891 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=47.6 pTM=0.438 ipTM=0.248 tol=3.37 2024-07-25 16:07:50,340 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=47.4 pTM=0.436 ipTM=0.251 tol=2.37 2024-07-25 16:08:22,793 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=47.4 pTM=0.436 ipTM=0.248 tol=3.8 2024-07-25 16:08:55,245 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=47.3 pTM=0.436 ipTM=0.25 tol=4 2024-07-25 16:09:27,708 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=47.5 pTM=0.436 ipTM=0.253 tol=6.34 2024-07-25 16:10:00,189 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=47.6 pTM=0.437 ipTM=0.251 tol=4.5 2024-07-25 16:10:32,675 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=47.6 pTM=0.436 ipTM=0.251 tol=5.05 2024-07-25 16:11:05,167 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=47.6 pTM=0.437 ipTM=0.251 tol=4.78 2024-07-25 16:11:37,654 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=47.6 pTM=0.436 ipTM=0.245 tol=4.85 2024-07-25 16:12:10,130 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=47.6 pTM=0.435 ipTM=0.25 tol=4.62 2024-07-25 16:12:42,614 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=47.6 pTM=0.435 ipTM=0.243 tol=2.1 2024-07-25 16:13:15,074 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=47.4 pTM=0.435 ipTM=0.245 tol=2.48 2024-07-25 16:13:47,517 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=47.4 pTM=0.435 ipTM=0.245 tol=2.04 2024-07-25 16:13:47,518 alphafold2_multimer_v3_model_1_seed_000 took 1115.6s (30 recycles) 2024-07-25 16:14:20,888 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=47.9 pTM=0.44 ipTM=0.242 2024-07-25 16:14:53,406 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=49.2 pTM=0.448 ipTM=0.242 tol=18.6 2024-07-25 16:15:25,907 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=49.2 pTM=0.447 ipTM=0.224 tol=13.1 2024-07-25 16:15:58,405 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=48.9 pTM=0.443 ipTM=0.202 tol=9.3 2024-07-25 16:16:30,941 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=49.1 pTM=0.44 ipTM=0.208 tol=6.07 2024-07-25 16:17:03,491 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=49 pTM=0.44 ipTM=0.224 tol=5.54 2024-07-25 16:17:36,055 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=49.1 pTM=0.438 ipTM=0.237 tol=4.1 2024-07-25 16:18:08,615 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=49.2 pTM=0.438 ipTM=0.216 tol=6.85 2024-07-25 16:18:41,180 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=49.2 pTM=0.438 ipTM=0.203 tol=3.57 2024-07-25 16:19:13,760 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=49 pTM=0.439 ipTM=0.207 tol=7.48 2024-07-25 16:19:46,326 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=48.9 pTM=0.437 ipTM=0.207 tol=7.1 2024-07-25 16:20:18,903 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=48.9 pTM=0.439 ipTM=0.246 tol=4.86 2024-07-25 16:20:51,473 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=48.8 pTM=0.439 ipTM=0.288 tol=4.64 2024-07-25 16:21:24,076 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=49 pTM=0.438 ipTM=0.23 tol=3.7 2024-07-25 16:21:56,638 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=48.9 pTM=0.439 ipTM=0.209 tol=4.55 2024-07-25 16:22:29,186 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=48.7 pTM=0.437 ipTM=0.207 tol=7.02 2024-07-25 16:23:01,741 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=49.1 pTM=0.439 ipTM=0.295 tol=9.63 2024-07-25 16:23:34,309 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=48.9 pTM=0.438 ipTM=0.289 tol=8.45 2024-07-25 16:24:06,905 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=48.9 pTM=0.437 ipTM=0.232 tol=6.67 2024-07-25 16:24:39,498 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=48.8 pTM=0.436 ipTM=0.21 tol=6.07 2024-07-25 16:25:12,060 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=48.8 pTM=0.436 ipTM=0.203 tol=3.91 2024-07-25 16:25:44,622 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=49 pTM=0.438 ipTM=0.215 tol=5.95 2024-07-25 16:26:17,177 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=49.2 pTM=0.438 ipTM=0.236 tol=4.9 2024-07-25 16:26:49,730 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=49.3 pTM=0.438 ipTM=0.239 tol=5.19 2024-07-25 16:27:22,281 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=49.1 pTM=0.438 ipTM=0.236 tol=3.87 2024-07-25 16:27:54,861 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=48.9 pTM=0.438 ipTM=0.236 tol=6.02 2024-07-25 16:28:27,426 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=49.1 pTM=0.437 ipTM=0.235 tol=3.42 2024-07-25 16:29:00,002 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=49.1 pTM=0.437 ipTM=0.225 tol=3.49 2024-07-25 16:29:32,566 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=49 pTM=0.437 ipTM=0.221 tol=3.69 2024-07-25 16:30:05,127 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=48.9 pTM=0.438 ipTM=0.232 tol=4.09 2024-07-25 16:30:37,656 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=48.9 pTM=0.438 ipTM=0.235 tol=4.39 2024-07-25 16:30:37,657 alphafold2_multimer_v3_model_2_seed_000 took 1009.3s (30 recycles) 2024-07-25 16:31:11,139 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=47.5 pTM=0.439 ipTM=0.227 2024-07-25 16:31:43,828 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=48.5 pTM=0.437 ipTM=0.219 tol=15.2 2024-07-25 16:32:16,485 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=48.3 pTM=0.439 ipTM=0.232 tol=15.4 2024-07-25 16:32:49,140 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=48.1 pTM=0.436 ipTM=0.22 tol=7.27 2024-07-25 16:33:21,783 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=48.2 pTM=0.438 ipTM=0.209 tol=3.58 2024-07-25 16:33:54,416 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=48 pTM=0.438 ipTM=0.215 tol=4.82 2024-07-25 16:34:27,063 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=48.2 pTM=0.438 ipTM=0.215 tol=6.28 2024-07-25 16:34:59,704 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=48.1 pTM=0.437 ipTM=0.218 tol=7.64 2024-07-25 16:35:32,349 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=48.4 pTM=0.439 ipTM=0.219 tol=3.38 2024-07-25 16:36:04,987 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=48.3 pTM=0.438 ipTM=0.216 tol=7.16 2024-07-25 16:36:37,646 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=48.2 pTM=0.44 ipTM=0.22 tol=5.28 2024-07-25 16:37:10,290 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=47.9 pTM=0.438 ipTM=0.22 tol=7.44 2024-07-25 16:37:42,952 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=48.2 pTM=0.441 ipTM=0.224 tol=6.42 2024-07-25 16:38:15,600 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=48.1 pTM=0.439 ipTM=0.213 tol=5.34 2024-07-25 16:38:48,244 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=48.2 pTM=0.44 ipTM=0.221 tol=3.66 2024-07-25 16:39:20,892 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=48 pTM=0.439 ipTM=0.216 tol=4.55 2024-07-25 16:39:53,548 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=48.3 pTM=0.441 ipTM=0.224 tol=2.7 2024-07-25 16:40:26,175 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=48.4 pTM=0.44 ipTM=0.215 tol=2.7 2024-07-25 16:40:58,840 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=48.4 pTM=0.442 ipTM=0.226 tol=4.84 2024-07-25 16:41:31,490 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=48.1 pTM=0.44 ipTM=0.217 tol=2.6 2024-07-25 16:42:04,156 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=48.1 pTM=0.44 ipTM=0.219 tol=3.79 2024-07-25 16:42:36,816 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=48.2 pTM=0.439 ipTM=0.215 tol=3.4 2024-07-25 16:43:09,473 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=48.3 pTM=0.44 ipTM=0.221 tol=2.77 2024-07-25 16:43:42,150 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=48.4 pTM=0.439 ipTM=0.217 tol=4.1 2024-07-25 16:44:14,814 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=48.3 pTM=0.44 ipTM=0.221 tol=4.94 2024-07-25 16:44:47,469 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=48.2 pTM=0.44 ipTM=0.217 tol=5.5 2024-07-25 16:45:20,108 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=48.5 pTM=0.44 ipTM=0.218 tol=2.4 2024-07-25 16:45:52,753 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=48.3 pTM=0.439 ipTM=0.213 tol=2.52 2024-07-25 16:46:25,434 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=48.5 pTM=0.439 ipTM=0.216 tol=3.16 2024-07-25 16:46:58,097 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=48.4 pTM=0.439 ipTM=0.212 tol=2.44 2024-07-25 16:47:30,747 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=48.4 pTM=0.44 ipTM=0.219 tol=2.35 2024-07-25 16:47:30,748 alphafold2_multimer_v3_model_3_seed_000 took 1012.2s (30 recycles) 2024-07-25 16:48:04,206 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=44.9 pTM=0.451 ipTM=0.24 2024-07-25 16:48:36,832 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=46.2 pTM=0.453 ipTM=0.262 tol=18.3 2024-07-25 16:49:09,466 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=46.2 pTM=0.443 ipTM=0.227 tol=8.64 2024-07-25 16:49:42,144 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=46.4 pTM=0.44 ipTM=0.208 tol=8.1 2024-07-25 16:50:14,819 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=46.5 pTM=0.436 ipTM=0.207 tol=6.75 2024-07-25 16:50:47,506 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=46.2 pTM=0.438 ipTM=0.205 tol=7.45 2024-07-25 16:51:20,190 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=46.8 pTM=0.438 ipTM=0.209 tol=7.17 2024-07-25 16:51:52,881 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=46.6 pTM=0.436 ipTM=0.202 tol=6.89 2024-07-25 16:52:25,566 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=46.7 pTM=0.437 ipTM=0.212 tol=6.92 2024-07-25 16:52:58,272 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=46.8 pTM=0.437 ipTM=0.211 tol=3.54 2024-07-25 16:53:30,974 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=46.7 pTM=0.436 ipTM=0.212 tol=6.39 2024-07-25 16:54:03,656 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=46.6 pTM=0.437 ipTM=0.208 tol=3.37 2024-07-25 16:54:36,346 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=46.6 pTM=0.437 ipTM=0.217 tol=6.89 2024-07-25 16:55:09,012 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=46.5 pTM=0.44 ipTM=0.215 tol=7.3 2024-07-25 16:55:41,684 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=46.7 pTM=0.439 ipTM=0.214 tol=5.23 2024-07-25 16:56:14,377 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=46.5 pTM=0.436 ipTM=0.211 tol=5.48 2024-07-25 16:56:47,092 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=46.6 pTM=0.438 ipTM=0.211 tol=3.55 2024-07-25 16:57:19,783 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=46.9 pTM=0.438 ipTM=0.212 tol=3.11 2024-07-25 16:57:52,484 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=46.6 pTM=0.439 ipTM=0.215 tol=2.92 2024-07-25 16:58:25,170 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=46.6 pTM=0.436 ipTM=0.211 tol=4.01 2024-07-25 16:58:57,852 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=46.5 pTM=0.437 ipTM=0.211 tol=3.68 2024-07-25 16:59:30,507 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=46.7 pTM=0.434 ipTM=0.207 tol=3.39 2024-07-25 17:00:03,191 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=46.6 pTM=0.435 ipTM=0.21 tol=7.94 2024-07-25 17:00:35,876 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=46.7 pTM=0.436 ipTM=0.209 tol=6.11 2024-07-25 17:01:08,555 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=46.7 pTM=0.436 ipTM=0.212 tol=5.91 2024-07-25 17:01:41,236 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=46.5 pTM=0.436 ipTM=0.206 tol=7.65 2024-07-25 17:02:13,908 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=46.8 pTM=0.435 ipTM=0.213 tol=7.29 2024-07-25 17:02:46,555 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=46.6 pTM=0.435 ipTM=0.205 tol=5.88 2024-07-25 17:03:19,202 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=46.6 pTM=0.436 ipTM=0.208 tol=6.16 2024-07-25 17:03:51,842 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=46.8 pTM=0.436 ipTM=0.201 tol=6.38 2024-07-25 17:04:24,476 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=46.8 pTM=0.436 ipTM=0.211 tol=4.67 2024-07-25 17:04:24,477 alphafold2_multimer_v3_model_4_seed_000 took 1012.9s (30 recycles) 2024-07-25 17:04:57,945 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=45.9 pTM=0.45 ipTM=0.327 2024-07-25 17:05:30,592 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=47.7 pTM=0.447 ipTM=0.216 tol=16.8 2024-07-25 17:06:03,241 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=47.3 pTM=0.451 ipTM=0.235 tol=11.1 2024-07-25 17:06:35,914 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=47.8 pTM=0.451 ipTM=0.231 tol=12.9 2024-07-25 17:07:08,569 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=47.9 pTM=0.452 ipTM=0.225 tol=8.55 2024-07-25 17:07:41,239 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=48 pTM=0.451 ipTM=0.246 tol=4.35 2024-07-25 17:08:13,862 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=48.2 pTM=0.451 ipTM=0.281 tol=7.34 2024-07-25 17:08:46,476 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=48.2 pTM=0.452 ipTM=0.267 tol=6.39 2024-07-25 17:09:19,104 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=48.2 pTM=0.455 ipTM=0.239 tol=6.18 2024-07-25 17:09:51,762 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=48.4 pTM=0.453 ipTM=0.236 tol=5.26 2024-07-25 17:10:24,463 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=48.1 pTM=0.451 ipTM=0.258 tol=6.14 2024-07-25 17:10:57,168 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=48.1 pTM=0.449 ipTM=0.249 tol=5.46 2024-07-25 17:11:29,881 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=48 pTM=0.45 ipTM=0.256 tol=4.84 2024-07-25 17:12:02,567 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=47.9 pTM=0.451 ipTM=0.281 tol=6.03 2024-07-25 17:12:35,268 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=48 pTM=0.448 ipTM=0.266 tol=6.45 2024-07-25 17:13:07,980 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=47.9 pTM=0.448 ipTM=0.255 tol=4.62 2024-07-25 17:13:40,690 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=48.2 pTM=0.448 ipTM=0.251 tol=4.01 2024-07-25 17:14:13,342 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=48.4 pTM=0.447 ipTM=0.256 tol=3.98 2024-07-25 17:14:46,043 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=48.2 pTM=0.448 ipTM=0.26 tol=3.16 2024-07-25 17:15:18,746 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=47.9 pTM=0.449 ipTM=0.259 tol=2.42 2024-07-25 17:15:51,463 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=47.8 pTM=0.448 ipTM=0.242 tol=6.31 2024-07-25 17:16:24,160 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=48 pTM=0.446 ipTM=0.236 tol=7.08 2024-07-25 17:16:56,821 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=48.2 pTM=0.451 ipTM=0.261 tol=6.25 2024-07-25 17:17:29,453 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=48.2 pTM=0.448 ipTM=0.255 tol=3.93 2024-07-25 17:18:02,064 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=48 pTM=0.451 ipTM=0.245 tol=6.9 2024-07-25 17:18:34,705 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=48 pTM=0.451 ipTM=0.262 tol=6.25 2024-07-25 17:19:07,354 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=48.1 pTM=0.451 ipTM=0.256 tol=2.94 2024-07-25 17:19:40,026 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=47.8 pTM=0.449 ipTM=0.241 tol=3.06 2024-07-25 17:20:12,698 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=47.8 pTM=0.45 ipTM=0.243 tol=7.93 2024-07-25 17:20:45,367 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=47.8 pTM=0.448 ipTM=0.252 tol=3.99 2024-07-25 17:21:18,047 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=47.9 pTM=0.445 ipTM=0.249 tol=4.09 2024-07-25 17:21:18,048 alphafold2_multimer_v3_model_5_seed_000 took 1012.7s (30 recycles) 2024-07-25 17:21:18,921 reranking models by 'multimer' metric 2024-07-25 17:21:22,330 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 17:23:33,643 Relaxation took 134.7s 2024-07-25 17:23:33,644 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=47.9 pTM=0.445 ipTM=0.249 2024-07-25 17:25:17,693 Relaxation took 104.0s 2024-07-25 17:25:17,693 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=47.4 pTM=0.435 ipTM=0.245 2024-07-25 17:27:37,536 Relaxation took 139.8s 2024-07-25 17:27:37,536 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=48.9 pTM=0.438 ipTM=0.235 2024-07-25 17:29:35,641 Relaxation took 118.1s 2024-07-25 17:29:35,641 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=48.4 pTM=0.44 ipTM=0.219 2024-07-25 17:31:28,472 Relaxation took 112.8s 2024-07-25 17:31:28,473 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=46.8 pTM=0.436 ipTM=0.211 2024-07-25 17:31:30,929 Done