2024-07-25 15:50:25,740 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:27,015 Running on GPU 2024-07-25 15:50:30,652 Found 6 citations for tools or databases 2024-07-25 15:50:30,652 Query 1/1: AEBP2_COPS7B (length 782) 2024-07-25 15:50:37,131 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,158 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,186 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,212 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,239 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,266 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,293 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,320 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,347 Timeout while fetching result from MSA server. 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Retrying... 2024-07-25 15:52:45,410 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:51,437 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:57,464 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:03,491 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:09,517 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:15,544 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:21,571 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:27,598 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:33,625 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:39,960 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:45,987 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:52,014 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:58,041 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:04,068 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:10,095 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:16,122 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:22,149 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:28,175 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:34,202 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:40,229 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:46,256 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:52,283 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:58,309 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:04,336 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:06,646 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:57:45,221 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=48.6 pTM=0.354 ipTM=0.219 2024-07-25 15:57:57,643 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=49.2 pTM=0.366 ipTM=0.295 tol=16.9 2024-07-25 15:58:10,076 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=50.4 pTM=0.379 ipTM=0.448 tol=11.4 2024-07-25 15:58:22,547 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=50 pTM=0.369 ipTM=0.395 tol=6.61 2024-07-25 15:58:35,045 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=50.1 pTM=0.37 ipTM=0.412 tol=3.38 2024-07-25 15:58:47,555 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=50 pTM=0.37 ipTM=0.406 tol=2.34 2024-07-25 15:59:00,086 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=49.5 pTM=0.368 ipTM=0.389 tol=2.45 2024-07-25 15:59:12,624 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=49.9 pTM=0.375 ipTM=0.431 tol=2.67 2024-07-25 15:59:25,172 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=50.3 pTM=0.379 ipTM=0.443 tol=5.27 2024-07-25 15:59:37,716 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=50.7 pTM=0.38 ipTM=0.456 tol=4.97 2024-07-25 15:59:50,273 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=51 pTM=0.383 ipTM=0.458 tol=2.25 2024-07-25 16:00:02,836 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=51 pTM=0.385 ipTM=0.449 tol=3.25 2024-07-25 16:00:15,397 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=51.4 pTM=0.389 ipTM=0.459 tol=2.39 2024-07-25 16:00:27,962 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=51.5 pTM=0.391 ipTM=0.471 tol=2.64 2024-07-25 16:00:40,529 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=51.7 pTM=0.395 ipTM=0.477 tol=2.56 2024-07-25 16:00:53,089 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=51.5 pTM=0.393 ipTM=0.469 tol=2.54 2024-07-25 16:01:05,659 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=51.9 pTM=0.397 ipTM=0.491 tol=3.06 2024-07-25 16:01:18,218 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=51.7 pTM=0.406 ipTM=0.506 tol=3.13 2024-07-25 16:01:30,781 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=51.6 pTM=0.401 ipTM=0.503 tol=2.93 2024-07-25 16:01:43,352 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=51.8 pTM=0.41 ipTM=0.521 tol=2.8 2024-07-25 16:01:55,928 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=51.8 pTM=0.405 ipTM=0.519 tol=3.1 2024-07-25 16:02:08,497 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=51.9 pTM=0.404 ipTM=0.506 tol=5.04 2024-07-25 16:02:21,071 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=52 pTM=0.404 ipTM=0.515 tol=3.27 2024-07-25 16:02:33,645 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=51.9 pTM=0.405 ipTM=0.504 tol=5 2024-07-25 16:02:46,223 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=52.2 pTM=0.408 ipTM=0.529 tol=1.68 2024-07-25 16:02:58,800 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=51.9 pTM=0.408 ipTM=0.521 tol=2.11 2024-07-25 16:03:11,383 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=52 pTM=0.405 ipTM=0.518 tol=2.2 2024-07-25 16:03:23,960 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=51.9 pTM=0.406 ipTM=0.517 tol=3.1 2024-07-25 16:03:36,540 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=51.8 pTM=0.405 ipTM=0.521 tol=1.72 2024-07-25 16:03:49,107 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=51.8 pTM=0.406 ipTM=0.513 tol=1.57 2024-07-25 16:04:01,672 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=52 pTM=0.407 ipTM=0.527 tol=2.16 2024-07-25 16:04:01,673 alphafold2_multimer_v3_model_1_seed_000 took 530.2s (30 recycles) 2024-07-25 16:04:14,620 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=48.9 pTM=0.334 ipTM=0.169 2024-07-25 16:04:27,189 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=48.9 pTM=0.343 ipTM=0.23 tol=11.1 2024-07-25 16:04:39,771 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=50.6 pTM=0.349 ipTM=0.294 tol=7.77 2024-07-25 16:04:52,349 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=50.7 pTM=0.346 ipTM=0.249 tol=4.71 2024-07-25 16:05:04,934 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=50.5 pTM=0.347 ipTM=0.243 tol=5.89 2024-07-25 16:05:17,522 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=50.8 pTM=0.35 ipTM=0.3 tol=5.18 2024-07-25 16:05:30,100 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=51.2 pTM=0.354 ipTM=0.263 tol=3.26 2024-07-25 16:05:42,682 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=51.9 pTM=0.36 ipTM=0.32 tol=3.32 2024-07-25 16:05:55,265 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=52.3 pTM=0.361 ipTM=0.312 tol=2.88 2024-07-25 16:06:07,855 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=52.7 pTM=0.364 ipTM=0.342 tol=2.69 2024-07-25 16:06:20,453 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=52.7 pTM=0.363 ipTM=0.336 tol=2.28 2024-07-25 16:06:33,050 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=52.8 pTM=0.365 ipTM=0.35 tol=2.25 2024-07-25 16:06:45,644 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=52.8 pTM=0.366 ipTM=0.362 tol=1.85 2024-07-25 16:06:58,242 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=52.1 pTM=0.362 ipTM=0.328 tol=2.31 2024-07-25 16:07:10,845 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=52.8 pTM=0.368 ipTM=0.373 tol=2.52 2024-07-25 16:07:23,445 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=52.7 pTM=0.369 ipTM=0.37 tol=2.43 2024-07-25 16:07:36,049 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=52.7 pTM=0.368 ipTM=0.349 tol=3.88 2024-07-25 16:07:48,657 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=52.7 pTM=0.367 ipTM=0.349 tol=2.83 2024-07-25 16:08:01,245 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=52.8 pTM=0.371 ipTM=0.365 tol=3.58 2024-07-25 16:08:13,845 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=52.7 pTM=0.366 ipTM=0.345 tol=3.92 2024-07-25 16:08:26,453 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=53.1 pTM=0.371 ipTM=0.406 tol=5.4 2024-07-25 16:08:39,048 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=53 pTM=0.37 ipTM=0.384 tol=4.41 2024-07-25 16:08:51,647 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=53.4 pTM=0.371 ipTM=0.407 tol=6.05 2024-07-25 16:09:04,243 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=53.4 pTM=0.374 ipTM=0.418 tol=4.15 2024-07-25 16:09:16,838 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=53.4 pTM=0.372 ipTM=0.398 tol=3.14 2024-07-25 16:09:29,438 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=53.1 pTM=0.372 ipTM=0.385 tol=4.11 2024-07-25 16:09:42,045 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=53 pTM=0.371 ipTM=0.359 tol=3.37 2024-07-25 16:09:54,658 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=53.2 pTM=0.371 ipTM=0.386 tol=3.45 2024-07-25 16:10:07,267 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=53.1 pTM=0.374 ipTM=0.404 tol=2.97 2024-07-25 16:10:19,869 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=53 pTM=0.371 ipTM=0.404 tol=3.65 2024-07-25 16:10:32,479 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=53.3 pTM=0.374 ipTM=0.416 tol=4.29 2024-07-25 16:10:32,480 alphafold2_multimer_v3_model_2_seed_000 took 390.4s (30 recycles) 2024-07-25 16:10:45,539 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=48.4 pTM=0.344 ipTM=0.154 2024-07-25 16:10:58,210 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=49.5 pTM=0.35 ipTM=0.263 tol=19.2 2024-07-25 16:11:10,870 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=49.7 pTM=0.345 ipTM=0.267 tol=6.54 2024-07-25 16:11:23,523 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=50.2 pTM=0.343 ipTM=0.214 tol=5.16 2024-07-25 16:11:36,185 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=50.7 pTM=0.347 ipTM=0.219 tol=3.76 2024-07-25 16:11:48,863 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=49.9 pTM=0.341 ipTM=0.181 tol=7.63 2024-07-25 16:12:01,538 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=50.6 pTM=0.345 ipTM=0.202 tol=9.02 2024-07-25 16:12:14,214 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=50.2 pTM=0.347 ipTM=0.228 tol=4.82 2024-07-25 16:12:26,887 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=51 pTM=0.358 ipTM=0.312 tol=5.79 2024-07-25 16:12:39,553 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=50.8 pTM=0.355 ipTM=0.304 tol=5.37 2024-07-25 16:12:52,217 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=50.8 pTM=0.354 ipTM=0.292 tol=5.79 2024-07-25 16:13:04,888 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=50.4 pTM=0.347 ipTM=0.248 tol=5.63 2024-07-25 16:13:17,549 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=50.8 pTM=0.352 ipTM=0.276 tol=9.15 2024-07-25 16:13:30,231 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=50.6 pTM=0.345 ipTM=0.222 tol=5.17 2024-07-25 16:13:42,903 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=50.8 pTM=0.356 ipTM=0.2 tol=5.21 2024-07-25 16:13:55,549 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=51.5 pTM=0.39 ipTM=0.436 tol=6.18 2024-07-25 16:14:08,193 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=52 pTM=0.393 ipTM=0.434 tol=3.09 2024-07-25 16:14:20,833 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=52.1 pTM=0.404 ipTM=0.46 tol=2.47 2024-07-25 16:14:33,479 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=51.8 pTM=0.398 ipTM=0.448 tol=2.38 2024-07-25 16:14:46,109 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=52.2 pTM=0.412 ipTM=0.505 tol=4.79 2024-07-25 16:14:58,744 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=52.6 pTM=0.413 ipTM=0.502 tol=6.49 2024-07-25 16:15:11,371 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=52.6 pTM=0.411 ipTM=0.508 tol=2.19 2024-07-25 16:15:24,009 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=52.8 pTM=0.416 ipTM=0.519 tol=1.93 2024-07-25 16:15:36,649 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=52.4 pTM=0.412 ipTM=0.517 tol=4.26 2024-07-25 16:15:49,296 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=52.3 pTM=0.414 ipTM=0.526 tol=6.09 2024-07-25 16:16:01,934 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=52.1 pTM=0.414 ipTM=0.523 tol=3.01 2024-07-25 16:16:14,579 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=52.4 pTM=0.417 ipTM=0.526 tol=2.36 2024-07-25 16:16:27,217 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=52 pTM=0.41 ipTM=0.512 tol=2.44 2024-07-25 16:16:39,859 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=52.3 pTM=0.414 ipTM=0.516 tol=2.01 2024-07-25 16:16:52,489 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=52 pTM=0.409 ipTM=0.504 tol=2.66 2024-07-25 16:17:05,128 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=52.2 pTM=0.415 ipTM=0.527 tol=2.02 2024-07-25 16:17:05,129 alphafold2_multimer_v3_model_3_seed_000 took 392.3s (30 recycles) 2024-07-25 16:17:18,150 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=46.8 pTM=0.343 ipTM=0.282 2024-07-25 16:17:30,789 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=47.4 pTM=0.327 ipTM=0.152 tol=14.8 2024-07-25 16:17:43,427 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=48 pTM=0.329 ipTM=0.152 tol=8.33 2024-07-25 16:17:56,069 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=48 pTM=0.331 ipTM=0.159 tol=6.47 2024-07-25 16:18:08,719 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=48.6 pTM=0.33 ipTM=0.155 tol=5.56 2024-07-25 16:18:21,364 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=48.3 pTM=0.329 ipTM=0.142 tol=2.5 2024-07-25 16:18:34,012 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=48.9 pTM=0.332 ipTM=0.149 tol=3.34 2024-07-25 16:18:46,659 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=48.7 pTM=0.331 ipTM=0.164 tol=5.09 2024-07-25 16:18:59,307 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=49.1 pTM=0.331 ipTM=0.156 tol=4.71 2024-07-25 16:19:11,961 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=49.2 pTM=0.33 ipTM=0.158 tol=3.01 2024-07-25 16:19:24,619 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=49.2 pTM=0.331 ipTM=0.156 tol=3.2 2024-07-25 16:19:37,269 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=48.9 pTM=0.33 ipTM=0.165 tol=3.15 2024-07-25 16:19:49,912 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=49.2 pTM=0.333 ipTM=0.172 tol=8.12 2024-07-25 16:20:02,566 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=48.9 pTM=0.333 ipTM=0.165 tol=4.18 2024-07-25 16:20:15,216 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=48.6 pTM=0.332 ipTM=0.176 tol=3.43 2024-07-25 16:20:27,866 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=48.5 pTM=0.328 ipTM=0.155 tol=3.49 2024-07-25 16:20:40,518 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=49.4 pTM=0.333 ipTM=0.177 tol=3.85 2024-07-25 16:20:53,172 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=49.1 pTM=0.33 ipTM=0.159 tol=3.27 2024-07-25 16:21:05,823 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=48.6 pTM=0.331 ipTM=0.175 tol=2.29 2024-07-25 16:21:18,470 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=48.7 pTM=0.329 ipTM=0.159 tol=2.31 2024-07-25 16:21:31,120 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=48.9 pTM=0.329 ipTM=0.164 tol=3.05 2024-07-25 16:21:43,757 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=48.8 pTM=0.327 ipTM=0.138 tol=2.62 2024-07-25 16:21:56,401 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=49 pTM=0.328 ipTM=0.141 tol=2.31 2024-07-25 16:22:09,054 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=48.9 pTM=0.329 ipTM=0.154 tol=2.19 2024-07-25 16:22:21,708 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=49.1 pTM=0.332 ipTM=0.16 tol=2.58 2024-07-25 16:22:34,344 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=48.3 pTM=0.334 ipTM=0.184 tol=2.96 2024-07-25 16:22:46,988 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=48.8 pTM=0.331 ipTM=0.161 tol=4.06 2024-07-25 16:22:59,633 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=48.9 pTM=0.331 ipTM=0.167 tol=2.99 2024-07-25 16:23:12,282 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=48.8 pTM=0.329 ipTM=0.156 tol=3.06 2024-07-25 16:23:24,920 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=48.8 pTM=0.329 ipTM=0.158 tol=2.2 2024-07-25 16:23:37,564 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=49.1 pTM=0.329 ipTM=0.166 tol=2.9 2024-07-25 16:23:37,564 alphafold2_multimer_v3_model_4_seed_000 took 392.0s (30 recycles) 2024-07-25 16:23:50,623 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=47.9 pTM=0.373 ipTM=0.542 2024-07-25 16:24:03,325 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=49.1 pTM=0.328 ipTM=0.134 tol=12.1 2024-07-25 16:24:16,024 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=49.9 pTM=0.332 ipTM=0.135 tol=12.4 2024-07-25 16:24:28,729 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=49.2 pTM=0.334 ipTM=0.276 tol=10.5 2024-07-25 16:24:41,452 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=50 pTM=0.33 ipTM=0.143 tol=12.5 2024-07-25 16:24:54,147 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=50.2 pTM=0.332 ipTM=0.132 tol=8.62 2024-07-25 16:25:06,843 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=50.7 pTM=0.332 ipTM=0.136 tol=5.61 2024-07-25 16:25:19,520 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=50.8 pTM=0.336 ipTM=0.163 tol=5.8 2024-07-25 16:25:32,214 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=50.1 pTM=0.337 ipTM=0.28 tol=9.08 2024-07-25 16:25:44,925 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=50.6 pTM=0.331 ipTM=0.131 tol=6.58 2024-07-25 16:25:57,631 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=50.4 pTM=0.334 ipTM=0.17 tol=5.18 2024-07-25 16:26:10,334 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=50.4 pTM=0.33 ipTM=0.134 tol=3.58 2024-07-25 16:26:23,034 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=50.7 pTM=0.333 ipTM=0.14 tol=4.88 2024-07-25 16:26:35,727 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=50.5 pTM=0.334 ipTM=0.139 tol=6.16 2024-07-25 16:26:48,418 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=50.5 pTM=0.336 ipTM=0.163 tol=4.12 2024-07-25 16:27:01,114 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=49.8 pTM=0.338 ipTM=0.305 tol=7.11 2024-07-25 16:27:13,833 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=50.4 pTM=0.332 ipTM=0.143 tol=9.29 2024-07-25 16:27:26,529 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=50.7 pTM=0.337 ipTM=0.193 tol=7.13 2024-07-25 16:27:39,225 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=50 pTM=0.332 ipTM=0.224 tol=5.16 2024-07-25 16:27:51,944 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=50.5 pTM=0.329 ipTM=0.14 tol=5.98 2024-07-25 16:28:04,650 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=50.7 pTM=0.337 ipTM=0.334 tol=5.92 2024-07-25 16:28:17,364 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=50.1 pTM=0.328 ipTM=0.161 tol=6.14 2024-07-25 16:28:30,072 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=50.6 pTM=0.335 ipTM=0.28 tol=8.12 2024-07-25 16:28:42,801 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=50.2 pTM=0.33 ipTM=0.143 tol=8.41 2024-07-25 16:28:55,524 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=50.6 pTM=0.331 ipTM=0.128 tol=6.68 2024-07-25 16:29:08,249 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=50.4 pTM=0.332 ipTM=0.146 tol=3.76 2024-07-25 16:29:20,951 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=50.2 pTM=0.343 ipTM=0.342 tol=7.63 2024-07-25 16:29:33,676 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=50.3 pTM=0.331 ipTM=0.156 tol=4.41 2024-07-25 16:29:46,384 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=50.3 pTM=0.332 ipTM=0.165 tol=3.92 2024-07-25 16:29:59,108 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=50.4 pTM=0.328 ipTM=0.128 tol=4.77 2024-07-25 16:30:11,827 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=50.4 pTM=0.33 ipTM=0.129 tol=3.95 2024-07-25 16:30:11,827 alphafold2_multimer_v3_model_5_seed_000 took 393.9s (30 recycles) 2024-07-25 16:30:12,218 reranking models by 'multimer' metric 2024-07-25 16:30:15,299 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 16:31:06,211 Relaxation took 54.0s 2024-07-25 16:31:06,211 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=52.2 pTM=0.415 ipTM=0.527 2024-07-25 16:31:52,693 Relaxation took 46.5s 2024-07-25 16:31:52,693 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=52 pTM=0.407 ipTM=0.527 2024-07-25 16:32:36,470 Relaxation took 43.8s 2024-07-25 16:32:36,470 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=53.3 pTM=0.374 ipTM=0.416 2024-07-25 16:33:21,537 Relaxation took 45.1s 2024-07-25 16:33:21,537 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=49.1 pTM=0.329 ipTM=0.166 2024-07-25 16:34:14,697 Relaxation took 53.2s 2024-07-25 16:34:14,697 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=50.4 pTM=0.33 ipTM=0.129 2024-07-25 16:34:16,053 Done