2024-07-25 15:50:25,739 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:27,127 Running on GPU 2024-07-25 15:50:30,650 Found 6 citations for tools or databases 2024-07-25 15:50:30,650 Query 1/1: AEBP2_RAB40C (length 799) 2024-07-25 15:50:37,199 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,226 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,254 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,281 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,308 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,335 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,362 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,389 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,415 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:31,442 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:37,469 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:43,496 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:49,523 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:55,550 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:01,576 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:09,296 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:15,324 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:21,352 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:27,379 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:33,405 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:39,432 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:45,459 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:51,486 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:57,513 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:03,540 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:09,567 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:15,594 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:21,620 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:27,647 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:33,674 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:40,105 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:46,132 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:52,159 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:58,186 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:04,213 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:10,240 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:16,267 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:22,294 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:28,320 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:34,348 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:40,374 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:46,401 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:52,428 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:58,455 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:04,482 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:07,489 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:57:59,267 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=42 pTM=0.319 ipTM=0.191 2024-07-25 15:58:12,566 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=40.7 pTM=0.308 ipTM=0.218 tol=12.1 2024-07-25 15:58:25,953 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=41.2 pTM=0.3 ipTM=0.18 tol=10.9 2024-07-25 15:58:39,382 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=41.4 pTM=0.301 ipTM=0.171 tol=9.96 2024-07-25 15:58:52,824 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=42.2 pTM=0.301 ipTM=0.175 tol=6.76 2024-07-25 15:59:06,257 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=42.3 pTM=0.302 ipTM=0.169 tol=4.44 2024-07-25 15:59:19,699 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=42.3 pTM=0.306 ipTM=0.176 tol=4.57 2024-07-25 15:59:33,174 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=42.7 pTM=0.304 ipTM=0.186 tol=4.37 2024-07-25 15:59:46,669 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=42.5 pTM=0.305 ipTM=0.186 tol=5.34 2024-07-25 16:00:00,176 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=42.6 pTM=0.304 ipTM=0.189 tol=6.73 2024-07-25 16:00:13,694 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=42.8 pTM=0.303 ipTM=0.179 tol=5.41 2024-07-25 16:00:27,223 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=42.8 pTM=0.304 ipTM=0.19 tol=6.24 2024-07-25 16:00:40,755 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=42.8 pTM=0.305 ipTM=0.186 tol=4.29 2024-07-25 16:00:54,299 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=42.9 pTM=0.306 ipTM=0.188 tol=4.15 2024-07-25 16:01:07,846 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=42.7 pTM=0.305 ipTM=0.194 tol=3.58 2024-07-25 16:01:21,400 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=42.9 pTM=0.306 ipTM=0.197 tol=3.06 2024-07-25 16:01:34,957 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=42.8 pTM=0.307 ipTM=0.19 tol=2.62 2024-07-25 16:01:48,521 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=43 pTM=0.306 ipTM=0.181 tol=3.38 2024-07-25 16:02:02,098 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=42.8 pTM=0.308 ipTM=0.185 tol=2.76 2024-07-25 16:02:15,666 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=43.1 pTM=0.307 ipTM=0.182 tol=2.92 2024-07-25 16:02:29,235 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=43 pTM=0.31 ipTM=0.189 tol=3.95 2024-07-25 16:02:42,813 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=43.3 pTM=0.308 ipTM=0.19 tol=3.94 2024-07-25 16:02:56,394 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=43.2 pTM=0.306 ipTM=0.184 tol=3.21 2024-07-25 16:03:09,970 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=43.2 pTM=0.309 ipTM=0.181 tol=3.32 2024-07-25 16:03:23,548 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=42.9 pTM=0.311 ipTM=0.182 tol=6.36 2024-07-25 16:03:37,120 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=43.3 pTM=0.313 ipTM=0.189 tol=6.63 2024-07-25 16:03:50,711 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=43.2 pTM=0.31 ipTM=0.185 tol=6.74 2024-07-25 16:04:04,297 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=43.3 pTM=0.307 ipTM=0.177 tol=7.21 2024-07-25 16:04:17,905 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=42.7 pTM=0.308 ipTM=0.179 tol=7.99 2024-07-25 16:04:31,487 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=43.2 pTM=0.31 ipTM=0.19 tol=3.48 2024-07-25 16:04:45,087 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=42.8 pTM=0.305 ipTM=0.185 tol=4.24 2024-07-25 16:04:45,088 alphafold2_multimer_v3_model_1_seed_000 took 573.5s (30 recycles) 2024-07-25 16:04:59,017 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=40.8 pTM=0.306 ipTM=0.183 2024-07-25 16:05:12,584 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=42.4 pTM=0.312 ipTM=0.176 tol=18.1 2024-07-25 16:05:26,167 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=43.1 pTM=0.308 ipTM=0.172 tol=16.2 2024-07-25 16:05:39,753 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=43.4 pTM=0.308 ipTM=0.169 tol=8.05 2024-07-25 16:05:53,341 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=44.1 pTM=0.307 ipTM=0.17 tol=4.82 2024-07-25 16:06:06,912 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=44.6 pTM=0.304 ipTM=0.16 tol=6.89 2024-07-25 16:06:20,492 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=44.4 pTM=0.307 ipTM=0.179 tol=4.51 2024-07-25 16:06:34,071 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=44.9 pTM=0.305 ipTM=0.161 tol=6.69 2024-07-25 16:06:47,650 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=45 pTM=0.306 ipTM=0.169 tol=8.16 2024-07-25 16:07:01,230 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=44.8 pTM=0.304 ipTM=0.156 tol=4.42 2024-07-25 16:07:14,800 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=45.2 pTM=0.307 ipTM=0.175 tol=3.09 2024-07-25 16:07:28,398 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=45.2 pTM=0.306 ipTM=0.165 tol=3.57 2024-07-25 16:07:41,980 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=45.2 pTM=0.307 ipTM=0.172 tol=6.64 2024-07-25 16:07:55,563 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=44.9 pTM=0.305 ipTM=0.165 tol=7.38 2024-07-25 16:08:09,141 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=44.8 pTM=0.308 ipTM=0.175 tol=4.73 2024-07-25 16:08:22,721 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=44.8 pTM=0.306 ipTM=0.167 tol=3.69 2024-07-25 16:08:36,309 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=45.1 pTM=0.31 ipTM=0.178 tol=3.84 2024-07-25 16:08:49,894 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=45 pTM=0.313 ipTM=0.186 tol=3.27 2024-07-25 16:09:03,474 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=45.2 pTM=0.31 ipTM=0.175 tol=2.65 2024-07-25 16:09:17,058 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=45.2 pTM=0.312 ipTM=0.192 tol=2.67 2024-07-25 16:09:30,640 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=45.2 pTM=0.309 ipTM=0.18 tol=3.24 2024-07-25 16:09:44,236 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=45.3 pTM=0.31 ipTM=0.199 tol=2.68 2024-07-25 16:09:57,833 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=45.4 pTM=0.308 ipTM=0.177 tol=2.64 2024-07-25 16:10:11,447 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=45.1 pTM=0.31 ipTM=0.182 tol=1.96 2024-07-25 16:10:25,066 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=45.2 pTM=0.309 ipTM=0.182 tol=3.89 2024-07-25 16:10:38,682 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=45.2 pTM=0.311 ipTM=0.184 tol=3.62 2024-07-25 16:10:52,277 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=45.4 pTM=0.307 ipTM=0.186 tol=4.43 2024-07-25 16:11:05,874 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=45.4 pTM=0.308 ipTM=0.181 tol=2.82 2024-07-25 16:11:19,460 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=45.4 pTM=0.308 ipTM=0.197 tol=6.07 2024-07-25 16:11:33,086 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=45 pTM=0.305 ipTM=0.177 tol=3.59 2024-07-25 16:11:46,688 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=45.2 pTM=0.305 ipTM=0.177 tol=6.46 2024-07-25 16:11:46,689 alphafold2_multimer_v3_model_2_seed_000 took 421.2s (30 recycles) 2024-07-25 16:12:00,732 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=43.4 pTM=0.358 ipTM=0.52 2024-07-25 16:12:14,400 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=43.8 pTM=0.335 ipTM=0.382 tol=16.4 2024-07-25 16:12:28,065 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=42.8 pTM=0.316 ipTM=0.304 tol=9.01 2024-07-25 16:12:41,747 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=42.5 pTM=0.303 ipTM=0.186 tol=6.01 2024-07-25 16:12:55,425 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=42.3 pTM=0.301 ipTM=0.18 tol=3.84 2024-07-25 16:13:09,111 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=42.3 pTM=0.298 ipTM=0.166 tol=4.87 2024-07-25 16:13:22,799 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=42.3 pTM=0.299 ipTM=0.174 tol=3.8 2024-07-25 16:13:36,484 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=42.7 pTM=0.297 ipTM=0.161 tol=5.25 2024-07-25 16:13:50,168 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=42.3 pTM=0.301 ipTM=0.175 tol=3.63 2024-07-25 16:14:03,844 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=42.3 pTM=0.297 ipTM=0.156 tol=4.84 2024-07-25 16:14:17,516 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=42.3 pTM=0.297 ipTM=0.16 tol=3.65 2024-07-25 16:14:31,202 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=42.3 pTM=0.298 ipTM=0.157 tol=2.72 2024-07-25 16:14:44,890 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=42.3 pTM=0.299 ipTM=0.169 tol=2.69 2024-07-25 16:14:58,570 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=42.3 pTM=0.296 ipTM=0.156 tol=2.47 2024-07-25 16:15:12,264 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=42.2 pTM=0.296 ipTM=0.16 tol=2.74 2024-07-25 16:15:25,940 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=42.6 pTM=0.296 ipTM=0.155 tol=2.54 2024-07-25 16:15:39,622 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=42.3 pTM=0.302 ipTM=0.182 tol=3.55 2024-07-25 16:15:53,313 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=42.5 pTM=0.299 ipTM=0.158 tol=3.35 2024-07-25 16:16:06,992 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=42.6 pTM=0.299 ipTM=0.164 tol=2.5 2024-07-25 16:16:20,678 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=42.4 pTM=0.298 ipTM=0.158 tol=3.4 2024-07-25 16:16:34,351 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=42.5 pTM=0.3 ipTM=0.179 tol=2.35 2024-07-25 16:16:48,024 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=42.4 pTM=0.297 ipTM=0.157 tol=2.62 2024-07-25 16:17:01,705 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=42.4 pTM=0.299 ipTM=0.168 tol=2.53 2024-07-25 16:17:15,388 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=42.2 pTM=0.297 ipTM=0.158 tol=2.52 2024-07-25 16:17:29,077 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=42.2 pTM=0.299 ipTM=0.17 tol=2.99 2024-07-25 16:17:42,756 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=42.4 pTM=0.298 ipTM=0.163 tol=4.41 2024-07-25 16:17:56,451 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=42.5 pTM=0.3 ipTM=0.177 tol=3.62 2024-07-25 16:18:10,164 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=42.2 pTM=0.296 ipTM=0.158 tol=2.5 2024-07-25 16:18:23,855 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=42 pTM=0.298 ipTM=0.166 tol=3.66 2024-07-25 16:18:37,539 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=42.1 pTM=0.297 ipTM=0.159 tol=2.97 2024-07-25 16:18:51,246 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=42.1 pTM=0.299 ipTM=0.17 tol=4.62 2024-07-25 16:18:51,246 alphafold2_multimer_v3_model_3_seed_000 took 424.2s (30 recycles) 2024-07-25 16:19:05,253 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=39.7 pTM=0.303 ipTM=0.172 2024-07-25 16:19:18,911 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=42.2 pTM=0.32 ipTM=0.286 tol=15.8 2024-07-25 16:19:32,575 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=42.5 pTM=0.316 ipTM=0.254 tol=9.41 2024-07-25 16:19:46,248 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=42.2 pTM=0.306 ipTM=0.199 tol=7.27 2024-07-25 16:19:59,947 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=42.2 pTM=0.302 ipTM=0.169 tol=10 2024-07-25 16:20:13,631 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=42.9 pTM=0.301 ipTM=0.165 tol=8.28 2024-07-25 16:20:27,327 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=43.2 pTM=0.298 ipTM=0.161 tol=7.79 2024-07-25 16:20:41,026 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=43.3 pTM=0.306 ipTM=0.21 tol=7.08 2024-07-25 16:20:54,725 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=43.7 pTM=0.304 ipTM=0.174 tol=6.73 2024-07-25 16:21:08,382 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=43.5 pTM=0.306 ipTM=0.17 tol=4.8 2024-07-25 16:21:22,042 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=43.7 pTM=0.303 ipTM=0.171 tol=5.34 2024-07-25 16:21:35,696 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=43.7 pTM=0.302 ipTM=0.165 tol=4.6 2024-07-25 16:21:49,335 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=44 pTM=0.302 ipTM=0.168 tol=3.51 2024-07-25 16:22:02,987 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=43.5 pTM=0.302 ipTM=0.157 tol=3.95 2024-07-25 16:22:16,656 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=43.3 pTM=0.304 ipTM=0.174 tol=6.28 2024-07-25 16:22:30,303 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=43.2 pTM=0.301 ipTM=0.157 tol=6.03 2024-07-25 16:22:43,941 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=43.9 pTM=0.309 ipTM=0.187 tol=3.95 2024-07-25 16:22:57,575 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=43.8 pTM=0.305 ipTM=0.169 tol=3.18 2024-07-25 16:23:11,205 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=44.3 pTM=0.31 ipTM=0.186 tol=4.27 2024-07-25 16:23:24,847 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=43.9 pTM=0.304 ipTM=0.169 tol=3.59 2024-07-25 16:23:38,448 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=44.6 pTM=0.322 ipTM=0.272 tol=4.94 2024-07-25 16:23:52,072 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=44.1 pTM=0.31 ipTM=0.178 tol=3.25 2024-07-25 16:24:05,704 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=44.5 pTM=0.313 ipTM=0.189 tol=3.67 2024-07-25 16:24:19,371 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=43.8 pTM=0.306 ipTM=0.175 tol=5.3 2024-07-25 16:24:33,018 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=43.8 pTM=0.317 ipTM=0.198 tol=5.48 2024-07-25 16:24:46,654 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=43.9 pTM=0.308 ipTM=0.18 tol=2.09 2024-07-25 16:25:00,288 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=43.7 pTM=0.31 ipTM=0.179 tol=2.66 2024-07-25 16:25:13,928 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=43.8 pTM=0.303 ipTM=0.169 tol=3.44 2024-07-25 16:25:27,562 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=43.9 pTM=0.311 ipTM=0.198 tol=6.62 2024-07-25 16:25:41,207 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=44.1 pTM=0.304 ipTM=0.167 tol=7.21 2024-07-25 16:25:54,834 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=43.7 pTM=0.308 ipTM=0.178 tol=3.04 2024-07-25 16:25:54,835 alphafold2_multimer_v3_model_4_seed_000 took 423.2s (30 recycles) 2024-07-25 16:26:08,869 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=41.2 pTM=0.325 ipTM=0.314 2024-07-25 16:26:22,522 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=42.1 pTM=0.333 ipTM=0.336 tol=13 2024-07-25 16:26:36,190 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=41.9 pTM=0.328 ipTM=0.273 tol=21.7 2024-07-25 16:26:49,845 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=43 pTM=0.312 ipTM=0.19 tol=17.3 2024-07-25 16:27:03,507 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=43.1 pTM=0.308 ipTM=0.192 tol=6.92 2024-07-25 16:27:17,168 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=43.4 pTM=0.302 ipTM=0.172 tol=3.75 2024-07-25 16:27:30,827 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=43.3 pTM=0.302 ipTM=0.161 tol=6.46 2024-07-25 16:27:44,480 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=44.2 pTM=0.3 ipTM=0.149 tol=3.07 2024-07-25 16:27:58,152 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=43.8 pTM=0.299 ipTM=0.151 tol=7.2 2024-07-25 16:28:11,840 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=43.5 pTM=0.299 ipTM=0.144 tol=6.55 2024-07-25 16:28:25,536 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=43.6 pTM=0.297 ipTM=0.145 tol=4.43 2024-07-25 16:28:39,215 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=43.6 pTM=0.298 ipTM=0.148 tol=3.57 2024-07-25 16:28:52,906 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=43.6 pTM=0.296 ipTM=0.148 tol=3.44 2024-07-25 16:29:06,598 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=43.3 pTM=0.296 ipTM=0.149 tol=4.68 2024-07-25 16:29:20,288 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=43.4 pTM=0.296 ipTM=0.15 tol=10.8 2024-07-25 16:29:33,984 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=43.7 pTM=0.298 ipTM=0.151 tol=6.59 2024-07-25 16:29:47,685 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=43.3 pTM=0.299 ipTM=0.158 tol=5.46 2024-07-25 16:30:01,389 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=43.5 pTM=0.299 ipTM=0.155 tol=9.23 2024-07-25 16:30:15,092 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=43.6 pTM=0.298 ipTM=0.154 tol=6.29 2024-07-25 16:30:28,794 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=43.4 pTM=0.301 ipTM=0.159 tol=6.18 2024-07-25 16:30:42,482 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=43.3 pTM=0.298 ipTM=0.159 tol=5.51 2024-07-25 16:30:56,183 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=43.5 pTM=0.3 ipTM=0.158 tol=10.7 2024-07-25 16:31:09,895 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=43.6 pTM=0.297 ipTM=0.155 tol=3.81 2024-07-25 16:31:23,601 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=43.6 pTM=0.299 ipTM=0.152 tol=8.2 2024-07-25 16:31:37,318 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=43.4 pTM=0.298 ipTM=0.153 tol=5.84 2024-07-25 16:31:51,060 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=43.5 pTM=0.298 ipTM=0.155 tol=7.85 2024-07-25 16:32:04,778 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=43.6 pTM=0.297 ipTM=0.155 tol=6.3 2024-07-25 16:32:18,482 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=43.2 pTM=0.297 ipTM=0.149 tol=8.4 2024-07-25 16:32:32,193 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=42.9 pTM=0.299 ipTM=0.157 tol=6.66 2024-07-25 16:32:45,906 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=43.5 pTM=0.3 ipTM=0.165 tol=7.71 2024-07-25 16:32:59,642 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=43.6 pTM=0.296 ipTM=0.156 tol=9.12 2024-07-25 16:32:59,643 alphafold2_multimer_v3_model_5_seed_000 took 424.4s (30 recycles) 2024-07-25 16:33:00,046 reranking models by 'multimer' metric 2024-07-25 16:33:02,948 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 16:34:14,894 Relaxation took 74.8s 2024-07-25 16:34:14,894 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=42.8 pTM=0.305 ipTM=0.185 2024-07-25 16:34:59,813 Relaxation took 44.9s 2024-07-25 16:34:59,814 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=43.7 pTM=0.308 ipTM=0.178 2024-07-25 16:35:55,590 Relaxation took 55.8s 2024-07-25 16:35:55,590 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=45.2 pTM=0.305 ipTM=0.177 2024-07-25 16:36:51,564 Relaxation took 56.0s 2024-07-25 16:36:51,564 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=42.1 pTM=0.299 ipTM=0.17 2024-07-25 16:37:52,260 Relaxation took 60.7s 2024-07-25 16:37:52,261 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=43.6 pTM=0.296 ipTM=0.156 2024-07-25 16:37:53,631 Done