2024-07-25 15:50:25,740 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:27,059 Running on GPU 2024-07-25 15:50:30,651 Found 6 citations for tools or databases 2024-07-25 15:50:30,652 Query 1/1: AJUBA_ASB2 (length 1173) 2024-07-25 15:50:37,188 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,215 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,243 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,270 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,297 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,324 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,351 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,379 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,405 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:31,432 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:37,459 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:43,486 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:49,513 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:55,540 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:01,567 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:09,241 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:15,269 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:21,297 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:27,324 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:33,351 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:39,378 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:45,405 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:51,432 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:52:57,459 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:03,485 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:09,512 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:15,539 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:21,566 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:27,593 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:33,620 Timeout while submitting to MSA server. Retrying... 2024-07-25 15:53:40,057 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:46,084 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:52,111 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:58,138 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:04,165 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:10,192 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:16,219 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:22,246 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:28,273 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:34,300 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:40,326 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:46,353 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:52,380 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:58,407 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:04,434 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:07,699 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:58:28,605 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=57.7 pTM=0.507 ipTM=0.305 2024-07-25 15:59:01,284 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=57.7 pTM=0.516 ipTM=0.297 tol=10.4 2024-07-25 15:59:34,112 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=57.3 pTM=0.51 ipTM=0.257 tol=7.33 2024-07-25 16:00:07,030 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=56.7 pTM=0.51 ipTM=0.283 tol=5.53 2024-07-25 16:00:40,047 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=56.4 pTM=0.515 ipTM=0.278 tol=4.8 2024-07-25 16:01:13,103 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=56 pTM=0.503 ipTM=0.271 tol=4.56 2024-07-25 16:01:46,190 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=56.1 pTM=0.505 ipTM=0.252 tol=3.82 2024-07-25 16:02:19,313 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=56.1 pTM=0.51 ipTM=0.275 tol=3.31 2024-07-25 16:02:52,486 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=56.4 pTM=0.507 ipTM=0.273 tol=4.52 2024-07-25 16:03:25,682 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=56.5 pTM=0.507 ipTM=0.271 tol=2.8 2024-07-25 16:03:58,871 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=56.5 pTM=0.505 ipTM=0.28 tol=3.23 2024-07-25 16:04:32,030 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=56.2 pTM=0.503 ipTM=0.276 tol=2.68 2024-07-25 16:05:05,185 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=56.6 pTM=0.505 ipTM=0.284 tol=2.28 2024-07-25 16:05:38,345 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=56.4 pTM=0.506 ipTM=0.287 tol=2.46 2024-07-25 16:06:11,508 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=56.6 pTM=0.507 ipTM=0.288 tol=1.9 2024-07-25 16:06:44,666 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=56.2 pTM=0.506 ipTM=0.286 tol=2.74 2024-07-25 16:07:17,845 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=56.7 pTM=0.507 ipTM=0.284 tol=2.88 2024-07-25 16:07:50,963 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=56.4 pTM=0.504 ipTM=0.297 tol=3.2 2024-07-25 16:08:24,083 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=56.6 pTM=0.504 ipTM=0.292 tol=1.77 2024-07-25 16:08:57,228 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=56.5 pTM=0.507 ipTM=0.289 tol=2.08 2024-07-25 16:09:30,417 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=56.6 pTM=0.508 ipTM=0.286 tol=1.58 2024-07-25 16:10:03,596 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=56.5 pTM=0.506 ipTM=0.291 tol=2.04 2024-07-25 16:10:36,782 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=56.4 pTM=0.507 ipTM=0.293 tol=2.06 2024-07-25 16:11:09,963 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=56.3 pTM=0.505 ipTM=0.286 tol=2.14 2024-07-25 16:11:43,124 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=56.5 pTM=0.506 ipTM=0.291 tol=2.18 2024-07-25 16:12:16,282 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=56.4 pTM=0.505 ipTM=0.282 tol=2.15 2024-07-25 16:12:49,472 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=56.6 pTM=0.507 ipTM=0.294 tol=2.03 2024-07-25 16:13:22,688 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=56.5 pTM=0.508 ipTM=0.289 tol=1.69 2024-07-25 16:13:55,904 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=56.8 pTM=0.507 ipTM=0.29 tol=2 2024-07-25 16:14:29,115 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=56.7 pTM=0.506 ipTM=0.289 tol=1.61 2024-07-25 16:15:02,338 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=56.5 pTM=0.506 ipTM=0.288 tol=2.26 2024-07-25 16:15:02,339 alphafold2_multimer_v3_model_1_seed_000 took 1190.2s (30 recycles) 2024-07-25 16:15:36,527 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=57.1 pTM=0.507 ipTM=0.339 2024-07-25 16:16:09,840 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.4 pTM=0.509 ipTM=0.306 tol=9.92 2024-07-25 16:16:43,155 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=57.5 pTM=0.507 ipTM=0.277 tol=13.1 2024-07-25 16:17:16,507 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=57.2 pTM=0.509 ipTM=0.267 tol=9.17 2024-07-25 16:17:49,842 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=56.9 pTM=0.508 ipTM=0.261 tol=10.9 2024-07-25 16:18:23,170 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=57.2 pTM=0.506 ipTM=0.262 tol=6.69 2024-07-25 16:18:56,504 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=57.2 pTM=0.506 ipTM=0.246 tol=5.51 2024-07-25 16:19:29,842 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=57.2 pTM=0.507 ipTM=0.245 tol=5.43 2024-07-25 16:20:03,169 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=57.4 pTM=0.509 ipTM=0.247 tol=6.26 2024-07-25 16:20:36,502 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=57.4 pTM=0.507 ipTM=0.256 tol=6.06 2024-07-25 16:21:09,828 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=57.3 pTM=0.506 ipTM=0.234 tol=10.1 2024-07-25 16:21:43,172 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=57 pTM=0.508 ipTM=0.231 tol=10.4 2024-07-25 16:22:16,531 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=57.5 pTM=0.507 ipTM=0.247 tol=6.23 2024-07-25 16:22:49,899 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=57.1 pTM=0.508 ipTM=0.252 tol=6.96 2024-07-25 16:23:23,245 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=57.2 pTM=0.508 ipTM=0.245 tol=6.05 2024-07-25 16:23:56,558 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=56.9 pTM=0.504 ipTM=0.252 tol=4.98 2024-07-25 16:24:29,886 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=57.2 pTM=0.509 ipTM=0.257 tol=9.4 2024-07-25 16:25:03,198 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=57 pTM=0.506 ipTM=0.259 tol=5.66 2024-07-25 16:25:36,494 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=57.4 pTM=0.511 ipTM=0.246 tol=6.36 2024-07-25 16:26:09,805 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=57 pTM=0.51 ipTM=0.244 tol=4.59 2024-07-25 16:26:43,129 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=57.3 pTM=0.51 ipTM=0.247 tol=6.01 2024-07-25 16:27:16,474 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=56.9 pTM=0.509 ipTM=0.256 tol=7.54 2024-07-25 16:27:49,775 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=56.8 pTM=0.506 ipTM=0.251 tol=5.77 2024-07-25 16:28:23,072 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=56.9 pTM=0.507 ipTM=0.242 tol=4.78 2024-07-25 16:28:56,368 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=57.1 pTM=0.509 ipTM=0.251 tol=8.26 2024-07-25 16:29:29,660 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=57.1 pTM=0.51 ipTM=0.253 tol=7.02 2024-07-25 16:30:02,999 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=57.2 pTM=0.512 ipTM=0.258 tol=6.4 2024-07-25 16:30:36,350 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=57.1 pTM=0.511 ipTM=0.249 tol=4.71 2024-07-25 16:31:09,642 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=56.8 pTM=0.511 ipTM=0.247 tol=7.34 2024-07-25 16:31:42,957 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=56.8 pTM=0.509 ipTM=0.227 tol=7.11 2024-07-25 16:32:16,285 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=56.9 pTM=0.511 ipTM=0.256 tol=5.08 2024-07-25 16:32:16,286 alphafold2_multimer_v3_model_2_seed_000 took 1033.1s (30 recycles) 2024-07-25 16:32:50,514 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=57.5 pTM=0.512 ipTM=0.359 2024-07-25 16:33:23,867 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=56.5 pTM=0.507 ipTM=0.249 tol=13.1 2024-07-25 16:33:57,280 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=56.4 pTM=0.5 ipTM=0.266 tol=6.7 2024-07-25 16:34:30,693 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=56.2 pTM=0.502 ipTM=0.239 tol=7.66 2024-07-25 16:35:04,053 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=56 pTM=0.502 ipTM=0.242 tol=5.09 2024-07-25 16:35:37,391 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=55.8 pTM=0.5 ipTM=0.237 tol=10.8 2024-07-25 16:36:10,715 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=55.9 pTM=0.501 ipTM=0.238 tol=8.45 2024-07-25 16:36:44,050 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=56.1 pTM=0.503 ipTM=0.234 tol=5.71 2024-07-25 16:37:17,423 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=56.2 pTM=0.505 ipTM=0.242 tol=5.32 2024-07-25 16:37:50,784 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=56.4 pTM=0.504 ipTM=0.239 tol=5.39 2024-07-25 16:38:24,118 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=56.3 pTM=0.499 ipTM=0.234 tol=7.38 2024-07-25 16:38:57,457 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=56 pTM=0.503 ipTM=0.232 tol=5.49 2024-07-25 16:39:30,768 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=56.3 pTM=0.501 ipTM=0.233 tol=6.25 2024-07-25 16:40:04,083 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=56.1 pTM=0.499 ipTM=0.24 tol=6.3 2024-07-25 16:40:37,369 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=55.8 pTM=0.502 ipTM=0.242 tol=5.08 2024-07-25 16:41:10,636 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=55.9 pTM=0.504 ipTM=0.234 tol=4.8 2024-07-25 16:41:43,920 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=55.9 pTM=0.503 ipTM=0.236 tol=3.01 2024-07-25 16:42:17,213 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=55.8 pTM=0.504 ipTM=0.243 tol=3.68 2024-07-25 16:42:50,519 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=56.2 pTM=0.509 ipTM=0.234 tol=4.43 2024-07-25 16:43:23,844 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=56.4 pTM=0.505 ipTM=0.23 tol=6 2024-07-25 16:43:57,130 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=56.1 pTM=0.503 ipTM=0.222 tol=5.42 2024-07-25 16:44:30,368 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=56.4 pTM=0.506 ipTM=0.237 tol=5.07 2024-07-25 16:45:03,593 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=55.9 pTM=0.503 ipTM=0.222 tol=4.2 2024-07-25 16:45:36,799 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=56.2 pTM=0.505 ipTM=0.23 tol=5.23 2024-07-25 16:46:10,037 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=55.8 pTM=0.504 ipTM=0.22 tol=3.86 2024-07-25 16:46:43,317 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=56 pTM=0.507 ipTM=0.225 tol=3.71 2024-07-25 16:47:16,617 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=56.2 pTM=0.508 ipTM=0.221 tol=5.09 2024-07-25 16:47:49,921 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=56 pTM=0.505 ipTM=0.229 tol=3.93 2024-07-25 16:48:23,242 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=56.1 pTM=0.506 ipTM=0.225 tol=2.77 2024-07-25 16:48:56,560 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=55.8 pTM=0.506 ipTM=0.229 tol=2.82 2024-07-25 16:49:29,891 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=55.9 pTM=0.508 ipTM=0.219 tol=4.26 2024-07-25 16:49:29,892 alphafold2_multimer_v3_model_3_seed_000 took 1032.8s (30 recycles) 2024-07-25 16:50:04,087 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=56.1 pTM=0.526 ipTM=0.364 2024-07-25 16:50:37,431 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=55.4 pTM=0.518 ipTM=0.246 tol=15.3 2024-07-25 16:51:10,817 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=55.5 pTM=0.513 ipTM=0.258 tol=10.5 2024-07-25 16:51:44,199 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=55.2 pTM=0.515 ipTM=0.221 tol=11.7 2024-07-25 16:52:17,580 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=55.6 pTM=0.512 ipTM=0.249 tol=7.85 2024-07-25 16:52:50,946 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=55.1 pTM=0.515 ipTM=0.219 tol=5.57 2024-07-25 16:53:24,326 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=55.2 pTM=0.509 ipTM=0.219 tol=4.75 2024-07-25 16:53:57,716 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=55.1 pTM=0.51 ipTM=0.209 tol=7.09 2024-07-25 16:54:31,129 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=55.6 pTM=0.513 ipTM=0.246 tol=9.39 2024-07-25 16:55:04,519 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=55.5 pTM=0.513 ipTM=0.226 tol=8.7 2024-07-25 16:55:37,931 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=55.6 pTM=0.508 ipTM=0.236 tol=10.8 2024-07-25 16:56:11,343 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=55.4 pTM=0.512 ipTM=0.215 tol=9.38 2024-07-25 16:56:44,774 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=55.6 pTM=0.511 ipTM=0.242 tol=5.91 2024-07-25 16:57:18,167 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=55.2 pTM=0.512 ipTM=0.213 tol=5.98 2024-07-25 16:57:51,590 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=55.2 pTM=0.512 ipTM=0.246 tol=7.91 2024-07-25 16:58:24,992 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=55.1 pTM=0.512 ipTM=0.219 tol=6.45 2024-07-25 16:58:58,401 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=55.4 pTM=0.514 ipTM=0.263 tol=5.63 2024-07-25 16:59:31,792 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=55.2 pTM=0.51 ipTM=0.213 tol=5.27 2024-07-25 17:00:05,166 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=55.3 pTM=0.51 ipTM=0.216 tol=6.53 2024-07-25 17:00:38,509 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=55.3 pTM=0.515 ipTM=0.214 tol=7.25 2024-07-25 17:01:11,895 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=55.8 pTM=0.512 ipTM=0.254 tol=5.48 2024-07-25 17:01:45,265 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=55.3 pTM=0.51 ipTM=0.213 tol=5.32 2024-07-25 17:02:18,639 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=55.3 pTM=0.512 ipTM=0.246 tol=5.75 2024-07-25 17:02:51,980 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=55.2 pTM=0.51 ipTM=0.215 tol=10.1 2024-07-25 17:03:25,359 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=55.1 pTM=0.51 ipTM=0.246 tol=8.25 2024-07-25 17:03:58,737 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=55.4 pTM=0.513 ipTM=0.224 tol=9.11 2024-07-25 17:04:32,172 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=55.6 pTM=0.514 ipTM=0.256 tol=5.45 2024-07-25 17:05:05,576 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=55.4 pTM=0.511 ipTM=0.22 tol=9.96 2024-07-25 17:05:38,983 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=55.4 pTM=0.511 ipTM=0.215 tol=7.92 2024-07-25 17:06:12,391 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=55.6 pTM=0.511 ipTM=0.206 tol=5.5 2024-07-25 17:06:45,801 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=55.3 pTM=0.511 ipTM=0.203 tol=4.4 2024-07-25 17:06:45,802 alphafold2_multimer_v3_model_4_seed_000 took 1035.1s (30 recycles) 2024-07-25 17:07:20,040 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=56.3 pTM=0.514 ipTM=0.414 2024-07-25 17:07:53,396 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=56 pTM=0.51 ipTM=0.23 tol=14.6 2024-07-25 17:08:26,791 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=55.9 pTM=0.505 ipTM=0.247 tol=8.13 2024-07-25 17:09:00,230 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=55.7 pTM=0.51 ipTM=0.223 tol=8.54 2024-07-25 17:09:33,618 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=55.8 pTM=0.513 ipTM=0.323 tol=8.4 2024-07-25 17:10:07,030 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=55.8 pTM=0.505 ipTM=0.208 tol=9.59 2024-07-25 17:10:40,418 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=55.8 pTM=0.508 ipTM=0.208 tol=5.12 2024-07-25 17:11:13,824 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=55.6 pTM=0.509 ipTM=0.217 tol=5.34 2024-07-25 17:11:47,251 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=55.7 pTM=0.512 ipTM=0.234 tol=6.17 2024-07-25 17:12:20,707 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=56.1 pTM=0.509 ipTM=0.214 tol=4.83 2024-07-25 17:12:54,170 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=55.8 pTM=0.526 ipTM=0.461 tol=8.95 2024-07-25 17:13:27,649 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=55.9 pTM=0.506 ipTM=0.214 tol=7.32 2024-07-25 17:14:01,104 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=55.5 pTM=0.507 ipTM=0.212 tol=4.51 2024-07-25 17:14:34,554 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=55.7 pTM=0.51 ipTM=0.224 tol=8.43 2024-07-25 17:15:07,992 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=55.7 pTM=0.507 ipTM=0.216 tol=6.63 2024-07-25 17:15:41,377 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=55.7 pTM=0.509 ipTM=0.221 tol=8.4 2024-07-25 17:16:14,801 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=55.8 pTM=0.508 ipTM=0.222 tol=5.95 2024-07-25 17:16:48,178 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=55.8 pTM=0.51 ipTM=0.226 tol=9.48 2024-07-25 17:17:21,590 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=55.8 pTM=0.503 ipTM=0.209 tol=8.79 2024-07-25 17:17:54,999 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=56 pTM=0.51 ipTM=0.22 tol=7.72 2024-07-25 17:18:28,419 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=55.8 pTM=0.509 ipTM=0.211 tol=5.83 2024-07-25 17:19:01,849 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=56 pTM=0.511 ipTM=0.223 tol=3.88 2024-07-25 17:19:35,265 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=55.8 pTM=0.505 ipTM=0.208 tol=6.15 2024-07-25 17:20:08,711 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=56.1 pTM=0.509 ipTM=0.219 tol=5.38 2024-07-25 17:20:42,143 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=55.9 pTM=0.507 ipTM=0.211 tol=8.19 2024-07-25 17:21:15,577 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=55.7 pTM=0.511 ipTM=0.226 tol=7.59 2024-07-25 17:21:49,007 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=55.8 pTM=0.509 ipTM=0.213 tol=8.81 2024-07-25 17:22:22,418 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=56.1 pTM=0.509 ipTM=0.21 tol=8.7 2024-07-25 17:22:55,844 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=55.7 pTM=0.512 ipTM=0.217 tol=7.21 2024-07-25 17:23:29,314 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=55.6 pTM=0.51 ipTM=0.223 tol=6.6 2024-07-25 17:24:02,810 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=55.7 pTM=0.511 ipTM=0.218 tol=7.97 2024-07-25 17:24:02,811 alphafold2_multimer_v3_model_5_seed_000 took 1036.2s (30 recycles) 2024-07-25 17:24:03,632 reranking models by 'multimer' metric 2024-07-25 17:24:07,043 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 17:25:57,190 Relaxation took 113.6s 2024-07-25 17:25:57,190 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=56.5 pTM=0.506 ipTM=0.288 2024-07-25 17:28:16,738 Relaxation took 139.5s 2024-07-25 17:28:16,738 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=56.9 pTM=0.511 ipTM=0.256 2024-07-25 17:30:12,023 Relaxation took 115.3s 2024-07-25 17:30:12,023 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=55.9 pTM=0.508 ipTM=0.219 2024-07-25 17:32:44,686 Relaxation took 152.7s 2024-07-25 17:32:44,686 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=55.7 pTM=0.511 ipTM=0.218 2024-07-25 17:34:43,692 Relaxation took 119.0s 2024-07-25 17:34:43,692 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=55.3 pTM=0.511 ipTM=0.203 2024-07-25 17:34:45,980 Done