2024-07-25 15:50:25,735 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-25 15:50:26,486 Running on GPU 2024-07-25 15:50:30,622 Found 6 citations for tools or databases 2024-07-25 15:50:30,622 Query 1/1: AJUBA_FBXO5 (length 985) 2024-07-25 15:50:37,134 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:43,161 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:49,189 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:50:55,216 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:01,241 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:07,268 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:13,295 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:19,323 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:25,350 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:31,377 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:37,404 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:43,432 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:49,460 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:51:55,488 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:01,515 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:09,253 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:15,281 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:21,308 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:27,335 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:33,362 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:39,389 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:45,416 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:51,444 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:52:57,471 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:03,498 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:09,525 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:15,552 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:21,580 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:27,607 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:33,634 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:39,932 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:45,960 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:51,987 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:53:58,014 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:04,043 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:10,070 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:16,098 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:22,125 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:28,152 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:34,180 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:40,207 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:46,234 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:52,261 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:54:58,287 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:04,314 Timeout while fetching result from MSA server. Retrying... 2024-07-25 15:55:07,399 Setting max_seq=508, max_extra_seq=2048 2024-07-25 15:59:24,636 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=37.8 pTM=0.234 ipTM=0.141 2024-07-25 15:59:50,172 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=36.9 pTM=0.231 ipTM=0.208 tol=17.5 2024-07-25 16:00:15,777 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=36 pTM=0.226 ipTM=0.159 tol=8.94 2024-07-25 16:00:41,430 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=36 pTM=0.221 ipTM=0.154 tol=5.88 2024-07-25 16:01:07,114 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=36.3 pTM=0.22 ipTM=0.154 tol=5.73 2024-07-25 16:01:32,804 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=36.3 pTM=0.218 ipTM=0.155 tol=5.91 2024-07-25 16:01:58,498 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=36.1 pTM=0.217 ipTM=0.155 tol=7.01 2024-07-25 16:02:24,174 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=36.3 pTM=0.219 ipTM=0.157 tol=5.55 2024-07-25 16:02:49,851 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=35.8 pTM=0.215 ipTM=0.158 tol=6.04 2024-07-25 16:03:15,531 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=35.9 pTM=0.223 ipTM=0.166 tol=7.85 2024-07-25 16:03:41,228 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=35.8 pTM=0.221 ipTM=0.155 tol=6.71 2024-07-25 16:04:06,926 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=35.8 pTM=0.219 ipTM=0.15 tol=5.64 2024-07-25 16:04:32,630 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=36 pTM=0.221 ipTM=0.151 tol=4.73 2024-07-25 16:04:58,335 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=35.8 pTM=0.216 ipTM=0.149 tol=4.75 2024-07-25 16:05:24,047 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=35.8 pTM=0.212 ipTM=0.147 tol=4.75 2024-07-25 16:05:49,754 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=35.5 pTM=0.212 ipTM=0.166 tol=6.36 2024-07-25 16:06:15,483 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=35.6 pTM=0.221 ipTM=0.168 tol=6.13 2024-07-25 16:06:41,216 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=35.4 pTM=0.217 ipTM=0.153 tol=5.02 2024-07-25 16:07:06,930 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=35.5 pTM=0.216 ipTM=0.151 tol=3.2 2024-07-25 16:07:32,658 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=35.9 pTM=0.217 ipTM=0.149 tol=3.37 2024-07-25 16:07:58,386 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=36 pTM=0.218 ipTM=0.15 tol=4.69 2024-07-25 16:08:24,131 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=35.8 pTM=0.217 ipTM=0.152 tol=8.06 2024-07-25 16:08:49,846 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=35.9 pTM=0.218 ipTM=0.151 tol=5.79 2024-07-25 16:09:15,577 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=36 pTM=0.215 ipTM=0.15 tol=3.87 2024-07-25 16:09:41,298 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=36.1 pTM=0.218 ipTM=0.149 tol=6.52 2024-07-25 16:10:07,001 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=35.8 pTM=0.216 ipTM=0.149 tol=6.25 2024-07-25 16:10:32,710 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=36 pTM=0.219 ipTM=0.153 tol=6.48 2024-07-25 16:10:58,415 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=35.8 pTM=0.214 ipTM=0.151 tol=3.46 2024-07-25 16:11:24,136 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=35.8 pTM=0.223 ipTM=0.161 tol=4.34 2024-07-25 16:11:49,844 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=35.6 pTM=0.216 ipTM=0.154 tol=2.71 2024-07-25 16:12:15,554 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=36.2 pTM=0.224 ipTM=0.161 tol=2.66 2024-07-25 16:12:15,554 alphafold2_multimer_v3_model_1_seed_000 took 1021.0s (30 recycles) 2024-07-25 16:12:41,988 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=37.4 pTM=0.243 ipTM=0.146 2024-07-25 16:13:07,694 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=37.7 pTM=0.227 ipTM=0.145 tol=15.1 2024-07-25 16:13:33,415 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=38.6 pTM=0.229 ipTM=0.15 tol=11.6 2024-07-25 16:13:59,155 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=38.9 pTM=0.228 ipTM=0.149 tol=9.38 2024-07-25 16:14:24,891 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=39.3 pTM=0.228 ipTM=0.149 tol=7.38 2024-07-25 16:14:50,609 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=39.6 pTM=0.233 ipTM=0.151 tol=8.43 2024-07-25 16:15:16,318 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=39.6 pTM=0.234 ipTM=0.153 tol=5.86 2024-07-25 16:15:42,027 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=39.8 pTM=0.234 ipTM=0.154 tol=7.8 2024-07-25 16:16:07,726 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=39.6 pTM=0.233 ipTM=0.155 tol=4.99 2024-07-25 16:16:33,424 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=39.3 pTM=0.231 ipTM=0.149 tol=6.01 2024-07-25 16:16:59,126 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=39.3 pTM=0.231 ipTM=0.152 tol=3.72 2024-07-25 16:17:24,819 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=39.4 pTM=0.233 ipTM=0.153 tol=3.85 2024-07-25 16:17:50,522 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=39.4 pTM=0.234 ipTM=0.153 tol=4.12 2024-07-25 16:18:16,219 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=39.5 pTM=0.233 ipTM=0.154 tol=4.04 2024-07-25 16:18:41,901 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=39.6 pTM=0.233 ipTM=0.153 tol=3.67 2024-07-25 16:19:07,597 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=39.2 pTM=0.233 ipTM=0.152 tol=3.24 2024-07-25 16:19:33,294 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=39.2 pTM=0.235 ipTM=0.155 tol=5.75 2024-07-25 16:19:58,991 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=39.3 pTM=0.232 ipTM=0.15 tol=4.3 2024-07-25 16:20:24,677 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=39.4 pTM=0.235 ipTM=0.153 tol=4.12 2024-07-25 16:20:50,371 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=39.7 pTM=0.237 ipTM=0.152 tol=3.34 2024-07-25 16:21:16,074 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=39.6 pTM=0.236 ipTM=0.149 tol=2.84 2024-07-25 16:21:41,778 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=39.7 pTM=0.239 ipTM=0.155 tol=2.36 2024-07-25 16:22:07,474 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=39.6 pTM=0.236 ipTM=0.149 tol=2.32 2024-07-25 16:22:33,196 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=39.9 pTM=0.238 ipTM=0.155 tol=1.96 2024-07-25 16:22:58,910 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=39.9 pTM=0.241 ipTM=0.155 tol=3.87 2024-07-25 16:23:24,647 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=39.8 pTM=0.238 ipTM=0.153 tol=2.88 2024-07-25 16:23:50,372 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=39.8 pTM=0.238 ipTM=0.154 tol=4.1 2024-07-25 16:24:16,104 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=39.7 pTM=0.237 ipTM=0.153 tol=3.57 2024-07-25 16:24:41,851 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=39.5 pTM=0.237 ipTM=0.154 tol=3.85 2024-07-25 16:25:07,583 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=39.6 pTM=0.237 ipTM=0.153 tol=3.51 2024-07-25 16:25:33,319 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=39.7 pTM=0.237 ipTM=0.152 tol=4.07 2024-07-25 16:25:33,319 alphafold2_multimer_v3_model_2_seed_000 took 797.0s (30 recycles) 2024-07-25 16:25:59,994 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=38.7 pTM=0.241 ipTM=0.139 2024-07-25 16:26:25,883 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=36.6 pTM=0.243 ipTM=0.144 tol=26.1 2024-07-25 16:26:51,799 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=36.1 pTM=0.229 ipTM=0.135 tol=14.8 2024-07-25 16:27:17,717 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=36.2 pTM=0.226 ipTM=0.138 tol=13.7 2024-07-25 16:27:43,626 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=36.6 pTM=0.226 ipTM=0.135 tol=11.2 2024-07-25 16:28:09,553 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=36.4 pTM=0.226 ipTM=0.137 tol=7.1 2024-07-25 16:28:35,486 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=36 pTM=0.231 ipTM=0.156 tol=13.1 2024-07-25 16:29:01,385 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=35.9 pTM=0.228 ipTM=0.143 tol=9.09 2024-07-25 16:29:27,296 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=35.9 pTM=0.223 ipTM=0.142 tol=8.02 2024-07-25 16:29:53,196 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=36 pTM=0.225 ipTM=0.14 tol=7.03 2024-07-25 16:30:19,109 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=36.1 pTM=0.223 ipTM=0.135 tol=6.68 2024-07-25 16:30:45,022 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=35.9 pTM=0.222 ipTM=0.148 tol=8.34 2024-07-25 16:31:10,936 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=36 pTM=0.226 ipTM=0.141 tol=8.39 2024-07-25 16:31:36,844 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=36.2 pTM=0.224 ipTM=0.142 tol=12.7 2024-07-25 16:32:02,769 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=35.8 pTM=0.223 ipTM=0.139 tol=7.39 2024-07-25 16:32:28,703 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=35.5 pTM=0.223 ipTM=0.14 tol=9.51 2024-07-25 16:32:54,612 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=35.6 pTM=0.225 ipTM=0.152 tol=6.98 2024-07-25 16:33:20,531 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=35.7 pTM=0.223 ipTM=0.151 tol=5.87 2024-07-25 16:33:46,453 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=35.7 pTM=0.23 ipTM=0.146 tol=7.28 2024-07-25 16:34:12,383 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=35.7 pTM=0.227 ipTM=0.144 tol=5.98 2024-07-25 16:34:38,294 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=35.8 pTM=0.226 ipTM=0.142 tol=4.69 2024-07-25 16:35:04,174 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=35.8 pTM=0.226 ipTM=0.146 tol=8.42 2024-07-25 16:35:30,081 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=35.9 pTM=0.225 ipTM=0.146 tol=6.02 2024-07-25 16:35:55,971 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=35.9 pTM=0.226 ipTM=0.142 tol=6.09 2024-07-25 16:36:21,854 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=35.8 pTM=0.227 ipTM=0.142 tol=4.12 2024-07-25 16:36:47,743 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=36 pTM=0.227 ipTM=0.158 tol=3.7 2024-07-25 16:37:13,627 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=36 pTM=0.226 ipTM=0.142 tol=4.25 2024-07-25 16:37:39,531 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=36 pTM=0.224 ipTM=0.139 tol=5.09 2024-07-25 16:38:05,411 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=35.7 pTM=0.227 ipTM=0.142 tol=4.63 2024-07-25 16:38:31,300 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=35.7 pTM=0.224 ipTM=0.141 tol=4.08 2024-07-25 16:38:57,192 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=35.4 pTM=0.224 ipTM=0.141 tol=4.51 2024-07-25 16:38:57,193 alphafold2_multimer_v3_model_3_seed_000 took 803.1s (30 recycles) 2024-07-25 16:39:23,828 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=37.8 pTM=0.243 ipTM=0.235 2024-07-25 16:39:49,702 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=37.2 pTM=0.233 ipTM=0.142 tol=13.9 2024-07-25 16:40:15,580 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=37.2 pTM=0.232 ipTM=0.168 tol=8.12 2024-07-25 16:40:41,472 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=36.8 pTM=0.227 ipTM=0.137 tol=8.92 2024-07-25 16:41:07,390 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=37.1 pTM=0.225 ipTM=0.132 tol=7.37 2024-07-25 16:41:33,294 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=36.8 pTM=0.226 ipTM=0.152 tol=10.2 2024-07-25 16:41:59,209 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=36.9 pTM=0.235 ipTM=0.211 tol=10.5 2024-07-25 16:42:25,107 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=36.7 pTM=0.223 ipTM=0.145 tol=9.41 2024-07-25 16:42:51,018 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=37.2 pTM=0.222 ipTM=0.143 tol=9.73 2024-07-25 16:43:16,919 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=37 pTM=0.221 ipTM=0.14 tol=5.85 2024-07-25 16:43:42,824 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=37.2 pTM=0.22 ipTM=0.135 tol=4.74 2024-07-25 16:44:08,705 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=37.1 pTM=0.229 ipTM=0.206 tol=4.46 2024-07-25 16:44:34,602 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=36.8 pTM=0.224 ipTM=0.14 tol=8.97 2024-07-25 16:45:00,477 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=37.1 pTM=0.228 ipTM=0.17 tol=4.5 2024-07-25 16:45:26,346 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=36.9 pTM=0.226 ipTM=0.14 tol=4.18 2024-07-25 16:45:52,214 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=36.7 pTM=0.224 ipTM=0.138 tol=4.79 2024-07-25 16:46:18,095 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=36.7 pTM=0.228 ipTM=0.185 tol=4.06 2024-07-25 16:46:43,966 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=36.6 pTM=0.223 ipTM=0.135 tol=4.05 2024-07-25 16:47:09,822 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=36.3 pTM=0.221 ipTM=0.134 tol=5.96 2024-07-25 16:47:35,683 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=36.8 pTM=0.223 ipTM=0.134 tol=6.11 2024-07-25 16:48:01,553 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=37 pTM=0.223 ipTM=0.148 tol=6.71 2024-07-25 16:48:27,412 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=36.6 pTM=0.223 ipTM=0.135 tol=4.61 2024-07-25 16:48:53,265 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=36.9 pTM=0.222 ipTM=0.134 tol=5.4 2024-07-25 16:49:19,129 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=37.1 pTM=0.224 ipTM=0.133 tol=5.65 2024-07-25 16:49:45,014 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=37.2 pTM=0.225 ipTM=0.134 tol=6.94 2024-07-25 16:50:10,887 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=37 pTM=0.223 ipTM=0.132 tol=7.38 2024-07-25 16:50:36,761 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=37 pTM=0.224 ipTM=0.135 tol=4.43 2024-07-25 16:51:02,638 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=37 pTM=0.222 ipTM=0.139 tol=4.21 2024-07-25 16:51:28,523 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=36.9 pTM=0.225 ipTM=0.14 tol=3.94 2024-07-25 16:51:54,396 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=36.9 pTM=0.222 ipTM=0.148 tol=5.92 2024-07-25 16:52:20,282 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=37.1 pTM=0.225 ipTM=0.139 tol=6.07 2024-07-25 16:52:20,283 alphafold2_multimer_v3_model_4_seed_000 took 802.3s (30 recycles) 2024-07-25 16:52:46,991 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=38.1 pTM=0.232 ipTM=0.128 2024-07-25 16:53:12,888 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=37.3 pTM=0.233 ipTM=0.134 tol=21.1 2024-07-25 16:53:38,792 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=37.5 pTM=0.226 ipTM=0.136 tol=11.5 2024-07-25 16:54:04,730 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=37.5 pTM=0.223 ipTM=0.138 tol=10 2024-07-25 16:54:30,656 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=38.3 pTM=0.226 ipTM=0.139 tol=9.94 2024-07-25 16:54:56,595 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=38.4 pTM=0.225 ipTM=0.14 tol=9.21 2024-07-25 16:55:22,535 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=38.5 pTM=0.23 ipTM=0.142 tol=5.64 2024-07-25 16:55:48,468 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=38.6 pTM=0.234 ipTM=0.145 tol=9.11 2024-07-25 16:56:14,396 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=38.4 pTM=0.231 ipTM=0.147 tol=5.89 2024-07-25 16:56:40,332 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=38.4 pTM=0.23 ipTM=0.144 tol=5.95 2024-07-25 16:57:06,271 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=38.6 pTM=0.232 ipTM=0.144 tol=6.3 2024-07-25 16:57:32,192 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=38.7 pTM=0.235 ipTM=0.146 tol=7.43 2024-07-25 16:57:58,117 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=38.5 pTM=0.23 ipTM=0.145 tol=5.13 2024-07-25 16:58:24,057 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=38.5 pTM=0.229 ipTM=0.145 tol=4.7 2024-07-25 16:58:49,979 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=38.7 pTM=0.23 ipTM=0.146 tol=7.36 2024-07-25 16:59:15,890 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=38.4 pTM=0.232 ipTM=0.147 tol=10.3 2024-07-25 16:59:41,824 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=38.3 pTM=0.229 ipTM=0.144 tol=6.85 2024-07-25 17:00:07,736 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=38 pTM=0.227 ipTM=0.143 tol=9.85 2024-07-25 17:00:33,663 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=38.2 pTM=0.227 ipTM=0.143 tol=8.1 2024-07-25 17:00:59,580 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=38.5 pTM=0.231 ipTM=0.148 tol=8.23 2024-07-25 17:01:25,498 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=38.5 pTM=0.232 ipTM=0.147 tol=5.11 2024-07-25 17:01:51,409 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=38.3 pTM=0.231 ipTM=0.145 tol=7.72 2024-07-25 17:02:17,325 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=38.2 pTM=0.229 ipTM=0.142 tol=8.11 2024-07-25 17:02:43,219 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=38.6 pTM=0.234 ipTM=0.145 tol=6.39 2024-07-25 17:03:09,119 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=38.5 pTM=0.232 ipTM=0.148 tol=5.95 2024-07-25 17:03:35,027 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=38.8 pTM=0.234 ipTM=0.145 tol=5.31 2024-07-25 17:04:00,911 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=38.5 pTM=0.236 ipTM=0.15 tol=5.91 2024-07-25 17:04:26,809 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=38.6 pTM=0.232 ipTM=0.149 tol=4.22 2024-07-25 17:04:52,696 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=38.7 pTM=0.235 ipTM=0.151 tol=4.68 2024-07-25 17:05:18,584 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=38.7 pTM=0.238 ipTM=0.152 tol=5.99 2024-07-25 17:05:44,488 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=38.4 pTM=0.235 ipTM=0.152 tol=6.07 2024-07-25 17:05:44,489 alphafold2_multimer_v3_model_5_seed_000 took 803.4s (30 recycles) 2024-07-25 17:05:45,252 reranking models by 'multimer' metric 2024-07-25 17:05:46,594 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-25 17:08:03,357 Relaxation took 138.1s 2024-07-25 17:08:03,357 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=36.2 pTM=0.224 ipTM=0.161 2024-07-25 17:09:57,092 Relaxation took 113.7s 2024-07-25 17:09:57,092 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=39.7 pTM=0.237 ipTM=0.152 2024-07-25 17:11:52,895 Relaxation took 115.8s 2024-07-25 17:11:52,895 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=38.4 pTM=0.235 ipTM=0.152 2024-07-25 17:14:04,051 Relaxation took 131.2s 2024-07-25 17:14:04,051 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=35.4 pTM=0.224 ipTM=0.141 2024-07-25 17:16:39,017 Relaxation took 155.0s 2024-07-25 17:16:39,018 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=37.1 pTM=0.225 ipTM=0.139 2024-07-25 17:16:41,086 Done