2024-07-26 02:43:23,769 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 02:43:24,107 Running on GPU
2024-07-26 02:43:25,945 Found 6 citations for tools or databases
2024-07-26 02:43:25,945 Query 1/1: CCNDBP1_WSB1 (length 781)
2024-07-26 02:43:26,391 Sleeping for 9s. Reason: PENDING
2024-07-26 02:43:35,815 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:43:45,231 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:43:52,642 Sleeping for 8s. Reason: RUNNING
2024-07-26 02:44:01,068 Sleeping for 5s. Reason: RUNNING
2024-07-26 02:44:06,497 Sleeping for 8s. Reason: RUNNING
2024-07-26 02:44:14,943 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:44:24,419 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:44:31,825 Sleeping for 8s. Reason: RUNNING
2024-07-26 02:44:40,254 Sleeping for 5s. Reason: RUNNING
2024-07-26 02:44:45,662 Sleeping for 6s. Reason: RUNNING
2024-07-26 02:44:52,075 Sleeping for 6s. Reason: RUNNING
2024-07-26 02:44:58,493 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:45:05,919 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:45:15,341 Sleeping for 5s. Reason: RUNNING
2024-07-26 02:45:20,763 Sleeping for 5s. Reason: RUNNING
2024-07-26 02:45:26,202 Sleeping for 6s. Reason: RUNNING
2024-07-26 02:45:32,631 Sleeping for 6s. Reason: RUNNING
2024-07-26 02:45:40,709 Sleeping for 6s. Reason: PENDING
2024-07-26 02:45:47,140 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:45:54,570 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:46:02,036 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:46:09,452 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:46:18,892 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:46:28,327 Sleeping for 7s. Reason: RUNNING
2024-07-26 02:46:35,827 Sleeping for 9s. Reason: RUNNING
2024-07-26 02:46:47,838 Setting max_seq=508, max_extra_seq=2048
2024-07-26 02:50:52,059 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74 pTM=0.518 ipTM=0.18
2024-07-26 02:51:08,008 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=72.4 pTM=0.504 ipTM=0.226 tol=10.9
2024-07-26 02:51:23,964 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.1 pTM=0.514 ipTM=0.195 tol=4.07
2024-07-26 02:51:39,947 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.2 pTM=0.512 ipTM=0.19 tol=1.15
2024-07-26 02:51:55,921 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.8 pTM=0.512 ipTM=0.2 tol=1.13
2024-07-26 02:52:11,927 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.1 pTM=0.508 ipTM=0.187 tol=0.778
2024-07-26 02:52:27,969 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74.4 pTM=0.509 ipTM=0.18 tol=0.458
2024-07-26 02:52:27,969 alphafold2_multimer_v3_model_1_seed_000 took 333.6s (6 recycles)
2024-07-26 02:52:44,559 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.5 pTM=0.516 ipTM=0.165
2024-07-26 02:53:00,655 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.9 pTM=0.575 ipTM=0.321 tol=12.4
2024-07-26 02:53:16,743 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.5 pTM=0.57 ipTM=0.293 tol=1.24
2024-07-26 02:53:32,871 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.1 pTM=0.523 ipTM=0.204 tol=7.13
2024-07-26 02:53:48,990 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=77.6 pTM=0.521 ipTM=0.196 tol=1.88
2024-07-26 02:54:05,129 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77.5 pTM=0.515 ipTM=0.169 tol=1.23
2024-07-26 02:54:21,260 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77.4 pTM=0.518 ipTM=0.187 tol=0.975
2024-07-26 02:54:37,408 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=77.6 pTM=0.516 ipTM=0.165 tol=2.71
2024-07-26 02:54:53,537 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77.4 pTM=0.516 ipTM=0.182 tol=1.3
2024-07-26 02:55:09,665 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=77.5 pTM=0.521 ipTM=0.183 tol=3
2024-07-26 02:55:25,784 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=77.8 pTM=0.539 ipTM=0.236 tol=1.2
2024-07-26 02:55:41,915 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=77.5 pTM=0.525 ipTM=0.198 tol=0.821
2024-07-26 02:55:58,056 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77.3 pTM=0.516 ipTM=0.174 tol=5.89
2024-07-26 02:56:14,206 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.5 pTM=0.516 ipTM=0.171 tol=1.26
2024-07-26 02:56:30,341 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.2 pTM=0.514 ipTM=0.172 tol=2.99
2024-07-26 02:56:46,475 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=77.8 pTM=0.533 ipTM=0.214 tol=1.83
2024-07-26 02:57:02,602 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.1 pTM=0.539 ipTM=0.23 tol=0.646
2024-07-26 02:57:18,766 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=77.2 pTM=0.52 ipTM=0.189 tol=7.38
2024-07-26 02:57:34,917 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=77.9 pTM=0.521 ipTM=0.188 tol=2.85
2024-07-26 02:57:51,072 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=77.2 pTM=0.512 ipTM=0.161 tol=2.81
2024-07-26 02:58:07,201 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=77.6 pTM=0.524 ipTM=0.205 tol=2.39
2024-07-26 02:58:23,324 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=77.4 pTM=0.53 ipTM=0.224 tol=1.23
2024-07-26 02:58:39,455 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=77.2 pTM=0.518 ipTM=0.193 tol=1.18
2024-07-26 02:58:55,572 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77.1 pTM=0.528 ipTM=0.233 tol=0.863
2024-07-26 02:59:11,683 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.5 pTM=0.539 ipTM=0.243 tol=0.687
2024-07-26 02:59:27,815 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=77.7 pTM=0.537 ipTM=0.227 tol=0.497
2024-07-26 02:59:27,816 alphafold2_multimer_v3_model_2_seed_000 took 419.4s (25 recycles)
2024-07-26 02:59:44,437 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.8 pTM=0.533 ipTM=0.212
2024-07-26 03:00:00,565 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.6 pTM=0.521 ipTM=0.16 tol=6.32
2024-07-26 03:00:16,694 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.9 pTM=0.587 ipTM=0.322 tol=9.23
2024-07-26 03:00:32,823 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.8 pTM=0.655 ipTM=0.483 tol=1.72
2024-07-26 03:00:48,959 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.5 pTM=0.56 ipTM=0.254 tol=0.994
2024-07-26 03:01:05,120 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.6 pTM=0.546 ipTM=0.22 tol=1.3
2024-07-26 03:01:21,253 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.6 pTM=0.65 ipTM=0.486 tol=1.52
2024-07-26 03:01:37,402 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.9 pTM=0.641 ipTM=0.453 tol=0.907
2024-07-26 03:01:53,534 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.6 pTM=0.595 ipTM=0.353 tol=0.772
2024-07-26 03:02:09,681 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=77.8 pTM=0.547 ipTM=0.227 tol=1.02
2024-07-26 03:02:25,815 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=77.2 pTM=0.543 ipTM=0.23 tol=0.72
2024-07-26 03:02:41,965 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.4 pTM=0.533 ipTM=0.194 tol=0.654
2024-07-26 03:02:58,115 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=76.8 pTM=0.532 ipTM=0.198 tol=0.889
2024-07-26 03:03:14,247 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.9 pTM=0.633 ipTM=0.444 tol=2.12
2024-07-26 03:03:30,379 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.6 pTM=0.635 ipTM=0.448 tol=1.35
2024-07-26 03:03:46,498 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=79.2 pTM=0.651 ipTM=0.472 tol=0.549
2024-07-26 03:04:02,628 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.7 pTM=0.59 ipTM=0.347 tol=0.323
2024-07-26 03:04:02,629 alphafold2_multimer_v3_model_3_seed_000 took 274.3s (16 recycles)
2024-07-26 03:04:19,275 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.9 pTM=0.526 ipTM=0.167
2024-07-26 03:04:35,400 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.7 pTM=0.597 ipTM=0.338 tol=13.3
2024-07-26 03:04:51,521 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.3 pTM=0.656 ipTM=0.478 tol=1.59
2024-07-26 03:05:07,638 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.9 pTM=0.6 ipTM=0.369 tol=0.706
2024-07-26 03:05:23,746 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.4 pTM=0.692 ipTM=0.563 tol=1.15
2024-07-26 03:05:39,876 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.2 pTM=0.67 ipTM=0.502 tol=1
2024-07-26 03:05:55,985 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.1 pTM=0.688 ipTM=0.541 tol=0.642
2024-07-26 03:06:12,098 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.9 pTM=0.643 ipTM=0.445 tol=0.429
2024-07-26 03:06:12,099 alphafold2_multimer_v3_model_4_seed_000 took 129.0s (7 recycles)
2024-07-26 03:06:28,729 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.9 pTM=0.535 ipTM=0.175
2024-07-26 03:06:44,889 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.6 pTM=0.533 ipTM=0.139 tol=6.77
2024-07-26 03:07:01,041 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.8 pTM=0.525 ipTM=0.135 tol=2.33
2024-07-26 03:07:17,176 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.2 pTM=0.675 ipTM=0.516 tol=8.59
2024-07-26 03:07:33,295 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.4 pTM=0.646 ipTM=0.453 tol=1.29
2024-07-26 03:07:49,434 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.8 pTM=0.646 ipTM=0.461 tol=0.927
2024-07-26 03:08:05,561 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.1 pTM=0.626 ipTM=0.416 tol=0.551
2024-07-26 03:08:21,711 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.6 pTM=0.572 ipTM=0.276 tol=0.721
2024-07-26 03:08:37,863 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.8 pTM=0.561 ipTM=0.281 tol=0.696
2024-07-26 03:08:53,986 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.4 pTM=0.6 ipTM=0.368 tol=0.541
2024-07-26 03:09:10,111 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.9 pTM=0.62 ipTM=0.402 tol=0.72
2024-07-26 03:09:26,241 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.4 pTM=0.568 ipTM=0.26 tol=0.769
2024-07-26 03:09:42,381 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=77.4 pTM=0.529 ipTM=0.186 tol=3.62
2024-07-26 03:09:58,550 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=77.4 pTM=0.529 ipTM=0.169 tol=1.36
2024-07-26 03:10:14,672 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.3 pTM=0.555 ipTM=0.26 tol=4.16
2024-07-26 03:10:30,776 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.1 pTM=0.602 ipTM=0.37 tol=1.1
2024-07-26 03:10:46,871 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.5 pTM=0.673 ipTM=0.517 tol=1
2024-07-26 03:11:02,978 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.7 pTM=0.59 ipTM=0.307 tol=0.774
2024-07-26 03:11:19,111 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=77.1 pTM=0.532 ipTM=0.2 tol=5.32
2024-07-26 03:11:35,252 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=77.2 pTM=0.535 ipTM=0.193 tol=2.77
2024-07-26 03:11:51,345 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.9 pTM=0.68 ipTM=0.542 tol=4.23
2024-07-26 03:12:07,450 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.4 pTM=0.64 ipTM=0.436 tol=0.649
2024-07-26 03:12:23,540 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.8 pTM=0.655 ipTM=0.484 tol=0.862
2024-07-26 03:12:39,652 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.2 pTM=0.638 ipTM=0.441 tol=0.735
2024-07-26 03:12:55,756 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78.1 pTM=0.59 ipTM=0.333 tol=0.502
2024-07-26 03:13:11,867 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=77.9 pTM=0.572 ipTM=0.286 tol=0.354
2024-07-26 03:13:11,867 alphafold2_multimer_v3_model_5_seed_000 took 419.3s (25 recycles)
2024-07-26 03:13:12,358 reranking models by 'multimer' metric
2024-07-26 03:13:13,549 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 03:13:48,855 Relaxation took 36.5s
2024-07-26 03:13:48,855 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.9 pTM=0.643 ipTM=0.445
2024-07-26 03:14:19,299 Relaxation took 30.4s
2024-07-26 03:14:19,299 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.7 pTM=0.59 ipTM=0.347
2024-07-26 03:14:46,300 Relaxation took 27.0s
2024-07-26 03:14:46,300 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.9 pTM=0.572 ipTM=0.286
2024-07-26 03:15:13,521 Relaxation took 27.2s
2024-07-26 03:15:13,521 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77.7 pTM=0.537 ipTM=0.227
2024-07-26 03:15:44,961 Relaxation took 31.4s
2024-07-26 03:15:44,961 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.4 pTM=0.509 ipTM=0.18
2024-07-26 03:15:46,592 Done