2024-07-26 04:10:50,084 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 04:10:50,427 Running on GPU
2024-07-26 04:10:52,280 Found 6 citations for tools or databases
2024-07-26 04:10:52,280 Query 1/1: CDKN2A_LRRC14 (length 660)
2024-07-26 04:10:52,736 Sleeping for 7s. Reason: PENDING
2024-07-26 04:11:00,161 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:11:09,596 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:11:17,029 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:11:24,445 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:11:31,879 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:11:40,336 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:11:46,788 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:11:55,220 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:12:01,631 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:12:11,053 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:12:19,496 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:12:28,934 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:12:39,383 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:12:49,807 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:13:01,706 Sleeping for 8s. Reason: PENDING
2024-07-26 04:13:10,138 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:13:19,569 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:13:24,996 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:13:32,426 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:13:39,849 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:13:48,285 Setting max_seq=508, max_extra_seq=2048
2024-07-26 04:17:01,562 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78 pTM=0.713 ipTM=0.283
2024-07-26 04:17:13,486 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.8 pTM=0.717 ipTM=0.291 tol=3.35
2024-07-26 04:17:25,402 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.8 pTM=0.715 ipTM=0.301 tol=1.88
2024-07-26 04:17:37,329 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.8 pTM=0.709 ipTM=0.277 tol=1.25
2024-07-26 04:17:49,255 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.1 pTM=0.731 ipTM=0.348 tol=2.7
2024-07-26 04:18:01,197 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.9 pTM=0.767 ipTM=0.48 tol=1.85
2024-07-26 04:18:13,135 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.8 pTM=0.767 ipTM=0.483 tol=0.872
2024-07-26 04:18:25,078 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.1 pTM=0.772 ipTM=0.499 tol=0.56
2024-07-26 04:18:37,038 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.2 pTM=0.788 ipTM=0.556 tol=0.396
2024-07-26 04:18:37,039 alphafold2_multimer_v3_model_1_seed_000 took 282.0s (8 recycles)
2024-07-26 04:18:49,384 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.5 pTM=0.718 ipTM=0.31
2024-07-26 04:19:01,404 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.9 pTM=0.722 ipTM=0.323 tol=3.8
2024-07-26 04:19:13,401 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.5 pTM=0.723 ipTM=0.343 tol=1.54
2024-07-26 04:19:25,413 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.3 pTM=0.719 ipTM=0.331 tol=2.38
2024-07-26 04:19:37,405 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.5 pTM=0.795 ipTM=0.62 tol=3.03
2024-07-26 04:19:49,388 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.8 pTM=0.797 ipTM=0.641 tol=1.17
2024-07-26 04:20:01,385 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.7 pTM=0.776 ipTM=0.551 tol=1.68
2024-07-26 04:20:13,433 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.1 pTM=0.758 ipTM=0.475 tol=0.459
2024-07-26 04:20:13,433 alphafold2_multimer_v3_model_2_seed_000 took 96.0s (7 recycles)
2024-07-26 04:20:25,813 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.9 pTM=0.787 ipTM=0.541
2024-07-26 04:20:37,822 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80 pTM=0.769 ipTM=0.479 tol=4.14
2024-07-26 04:20:49,835 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.1 pTM=0.748 ipTM=0.391 tol=1.17
2024-07-26 04:21:01,884 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.3 pTM=0.806 ipTM=0.642 tol=0.785
2024-07-26 04:21:13,924 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=82.2 pTM=0.816 ipTM=0.705 tol=2.33
2024-07-26 04:21:25,940 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=82.6 pTM=0.823 ipTM=0.736 tol=0.934
2024-07-26 04:21:37,955 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=82.2 pTM=0.812 ipTM=0.683 tol=0.893
2024-07-26 04:21:49,984 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=82.2 pTM=0.813 ipTM=0.685 tol=1.62
2024-07-26 04:22:02,052 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=81.8 pTM=0.804 ipTM=0.648 tol=1.82
2024-07-26 04:22:14,084 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=82.1 pTM=0.814 ipTM=0.689 tol=1.66
2024-07-26 04:22:26,080 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.6 pTM=0.801 ipTM=0.638 tol=2.2
2024-07-26 04:22:38,119 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.9 pTM=0.813 ipTM=0.669 tol=0.836
2024-07-26 04:22:50,177 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=81.1 pTM=0.792 ipTM=0.584 tol=0.906
2024-07-26 04:23:02,232 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.6 pTM=0.787 ipTM=0.559 tol=1.35
2024-07-26 04:23:14,282 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.6 pTM=0.775 ipTM=0.494 tol=0.414
2024-07-26 04:23:14,283 alphafold2_multimer_v3_model_3_seed_000 took 180.5s (14 recycles)
2024-07-26 04:23:26,724 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.3 pTM=0.786 ipTM=0.533
2024-07-26 04:23:38,782 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.9 pTM=0.823 ipTM=0.725 tol=1.95
2024-07-26 04:23:50,838 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=83.6 pTM=0.842 ipTM=0.772 tol=0.681
2024-07-26 04:24:02,904 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=83.6 pTM=0.841 ipTM=0.78 tol=0.792
2024-07-26 04:24:14,979 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=83.2 pTM=0.835 ipTM=0.762 tol=0.544
2024-07-26 04:24:27,037 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.8 pTM=0.843 ipTM=0.788 tol=0.622
2024-07-26 04:24:39,073 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=83.8 pTM=0.84 ipTM=0.784 tol=0.796
2024-07-26 04:24:51,114 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.1 pTM=0.847 ipTM=0.805 tol=0.82
2024-07-26 04:25:03,177 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=83.9 pTM=0.844 ipTM=0.796 tol=0.975
2024-07-26 04:25:15,253 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84 pTM=0.845 ipTM=0.802 tol=0.688
2024-07-26 04:25:27,302 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=83.9 pTM=0.844 ipTM=0.799 tol=0.429
2024-07-26 04:25:27,302 alphafold2_multimer_v3_model_4_seed_000 took 132.7s (10 recycles)
2024-07-26 04:25:39,693 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.8 pTM=0.736 ipTM=0.346
2024-07-26 04:25:51,759 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.9 pTM=0.836 ipTM=0.765 tol=4
2024-07-26 04:26:03,824 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=83 pTM=0.834 ipTM=0.77 tol=2.92
2024-07-26 04:26:15,886 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.4 pTM=0.822 ipTM=0.711 tol=1.03
2024-07-26 04:26:27,911 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.6 pTM=0.823 ipTM=0.723 tol=0.691
2024-07-26 04:26:39,927 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82.9 pTM=0.832 ipTM=0.748 tol=1.92
2024-07-26 04:26:51,943 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=82.6 pTM=0.823 ipTM=0.724 tol=0.923
2024-07-26 04:27:03,961 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=82.5 pTM=0.823 ipTM=0.722 tol=0.953
2024-07-26 04:27:15,982 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=82.6 pTM=0.823 ipTM=0.72 tol=0.754
2024-07-26 04:27:27,987 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=82.6 pTM=0.825 ipTM=0.732 tol=1.16
2024-07-26 04:27:40,001 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=82.2 pTM=0.821 ipTM=0.716 tol=0.766
2024-07-26 04:27:52,037 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=82.6 pTM=0.829 ipTM=0.736 tol=0.798
2024-07-26 04:28:04,052 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=82.6 pTM=0.825 ipTM=0.724 tol=1.13
2024-07-26 04:28:16,074 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=83.2 pTM=0.836 ipTM=0.754 tol=0.585
2024-07-26 04:28:28,105 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=83.1 pTM=0.833 ipTM=0.746 tol=0.388
2024-07-26 04:28:28,106 alphafold2_multimer_v3_model_5_seed_000 took 180.4s (14 recycles)
2024-07-26 04:28:28,465 reranking models by 'multimer' metric
2024-07-26 04:28:31,106 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 04:28:58,735 Relaxation took 30.3s
2024-07-26 04:28:58,735 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.9 pTM=0.844 ipTM=0.799
2024-07-26 04:29:20,804 Relaxation took 22.1s
2024-07-26 04:29:20,805 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=83.1 pTM=0.833 ipTM=0.746
2024-07-26 04:29:41,766 Relaxation took 21.0s
2024-07-26 04:29:41,766 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.2 pTM=0.788 ipTM=0.556
2024-07-26 04:30:17,640 Relaxation took 35.9s
2024-07-26 04:30:17,640 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.6 pTM=0.775 ipTM=0.494
2024-07-26 04:30:58,832 Relaxation took 41.2s
2024-07-26 04:30:58,832 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.1 pTM=0.758 ipTM=0.475
2024-07-26 04:31:00,282 Done