2024-07-26 04:14:02,151 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 04:14:02,460 Running on GPU
2024-07-26 04:14:04,256 Found 6 citations for tools or databases
2024-07-26 04:14:04,256 Query 1/1: CDKN2A_NAE1 (length 701)
2024-07-26 04:14:04,717 Sleeping for 7s. Reason: PENDING
2024-07-26 04:14:12,136 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:14:17,550 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:14:25,979 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:14:34,427 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:14:43,846 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:14:49,343 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:14:58,795 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:15:04,225 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:15:10,647 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:15:16,084 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:15:23,544 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:15:28,968 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:15:39,091 Sleeping for 10s. Reason: PENDING
2024-07-26 04:15:49,529 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:15:59,953 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:16:06,385 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:16:16,841 Sleeping for 6s. Reason: RUNNING
2024-07-26 04:16:25,535 Setting max_seq=508, max_extra_seq=2048
2024-07-26 04:19:26,427 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=85 pTM=0.747 ipTM=0.28
2024-07-26 04:19:35,993 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=85.8 pTM=0.747 ipTM=0.382 tol=8.19
2024-07-26 04:19:45,626 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.2 pTM=0.737 ipTM=0.228 tol=2.47
2024-07-26 04:19:55,263 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=84 pTM=0.729 ipTM=0.201 tol=1.14
2024-07-26 04:20:04,920 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=84.4 pTM=0.733 ipTM=0.216 tol=0.953
2024-07-26 04:20:14,595 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.3 pTM=0.75 ipTM=0.28 tol=1.6
2024-07-26 04:20:24,269 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.8 pTM=0.74 ipTM=0.247 tol=1.27
2024-07-26 04:20:33,976 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85 pTM=0.745 ipTM=0.247 tol=1.17
2024-07-26 04:20:43,662 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=85.2 pTM=0.744 ipTM=0.303 tol=1.11
2024-07-26 04:20:53,319 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=85 pTM=0.748 ipTM=0.371 tol=0.799
2024-07-26 04:21:03,049 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=85.2 pTM=0.75 ipTM=0.344 tol=0.764
2024-07-26 04:21:12,767 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.8 pTM=0.747 ipTM=0.322 tol=0.914
2024-07-26 04:21:22,464 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=84.9 pTM=0.747 ipTM=0.316 tol=2
2024-07-26 04:21:32,166 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.9 pTM=0.743 ipTM=0.305 tol=1.53
2024-07-26 04:21:41,890 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=85 pTM=0.741 ipTM=0.28 tol=1.25
2024-07-26 04:21:51,593 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=84.4 pTM=0.737 ipTM=0.27 tol=1.49
2024-07-26 04:22:01,274 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=84 pTM=0.727 ipTM=0.23 tol=2.71
2024-07-26 04:22:10,967 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=83.6 pTM=0.715 ipTM=0.156 tol=5.73
2024-07-26 04:22:20,680 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=83.6 pTM=0.719 ipTM=0.157 tol=4.78
2024-07-26 04:22:30,379 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=84.4 pTM=0.735 ipTM=0.237 tol=2.07
2024-07-26 04:22:40,071 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=84.9 pTM=0.745 ipTM=0.276 tol=1.09
2024-07-26 04:22:49,747 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=84.1 pTM=0.732 ipTM=0.219 tol=3.74
2024-07-26 04:22:59,465 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=84.6 pTM=0.733 ipTM=0.216 tol=2.22
2024-07-26 04:23:09,175 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=83.9 pTM=0.725 ipTM=0.203 tol=1.08
2024-07-26 04:23:18,852 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=83.8 pTM=0.725 ipTM=0.231 tol=1.33
2024-07-26 04:23:28,530 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=84.1 pTM=0.727 ipTM=0.247 tol=1.23
2024-07-26 04:23:38,208 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=83.8 pTM=0.724 ipTM=0.21 tol=0.599
2024-07-26 04:23:47,871 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=83.9 pTM=0.725 ipTM=0.232 tol=3.94
2024-07-26 04:23:57,584 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=83.4 pTM=0.715 ipTM=0.15 tol=3.9
2024-07-26 04:24:07,279 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.3 pTM=0.718 ipTM=0.152 tol=1.62
2024-07-26 04:24:16,968 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=83.6 pTM=0.721 ipTM=0.17 tol=2.34
2024-07-26 04:24:16,968 alphafold2_multimer_v3_model_1_seed_000 took 466.2s (30 recycles)
2024-07-26 04:24:26,980 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=83.5 pTM=0.72 ipTM=0.19
2024-07-26 04:24:36,716 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.7 pTM=0.718 ipTM=0.158 tol=7.58
2024-07-26 04:24:46,458 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=85.9 pTM=0.729 ipTM=0.214 tol=2.14
2024-07-26 04:24:56,187 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=85.9 pTM=0.733 ipTM=0.229 tol=0.95
2024-07-26 04:25:05,901 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=85.8 pTM=0.729 ipTM=0.212 tol=1.29
2024-07-26 04:25:15,649 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86 pTM=0.732 ipTM=0.23 tol=1.53
2024-07-26 04:25:25,369 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=86 pTM=0.732 ipTM=0.25 tol=1.38
2024-07-26 04:25:35,102 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=86.1 pTM=0.734 ipTM=0.238 tol=1.08
2024-07-26 04:25:44,840 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=86.2 pTM=0.736 ipTM=0.266 tol=0.568
2024-07-26 04:25:54,570 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=85.9 pTM=0.731 ipTM=0.239 tol=0.472
2024-07-26 04:25:54,570 alphafold2_multimer_v3_model_2_seed_000 took 97.3s (9 recycles)
2024-07-26 04:26:04,556 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=85.8 pTM=0.732 ipTM=0.375
2024-07-26 04:26:14,244 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=87.7 pTM=0.807 ipTM=0.567 tol=9.66
2024-07-26 04:26:23,944 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=87.7 pTM=0.778 ipTM=0.522 tol=4.34
2024-07-26 04:26:33,616 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=87.2 pTM=0.771 ipTM=0.437 tol=0.769
2024-07-26 04:26:43,322 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=87.5 pTM=0.778 ipTM=0.459 tol=0.688
2024-07-26 04:26:52,993 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=86.8 pTM=0.76 ipTM=0.381 tol=0.583
2024-07-26 04:27:02,678 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=87.2 pTM=0.778 ipTM=0.466 tol=0.724
2024-07-26 04:27:12,346 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=86.8 pTM=0.754 ipTM=0.358 tol=0.848
2024-07-26 04:27:22,044 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=86.9 pTM=0.77 ipTM=0.405 tol=0.649
2024-07-26 04:27:31,717 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=86.8 pTM=0.753 ipTM=0.361 tol=0.668
2024-07-26 04:27:41,420 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=86.6 pTM=0.759 ipTM=0.355 tol=0.645
2024-07-26 04:27:51,106 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=87.1 pTM=0.77 ipTM=0.425 tol=0.571
2024-07-26 04:28:00,790 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=86.2 pTM=0.743 ipTM=0.269 tol=0.92
2024-07-26 04:28:10,500 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=86.8 pTM=0.775 ipTM=0.396 tol=0.989
2024-07-26 04:28:20,164 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=86.8 pTM=0.756 ipTM=0.372 tol=0.641
2024-07-26 04:28:29,845 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=85.9 pTM=0.748 ipTM=0.29 tol=0.448
2024-07-26 04:28:29,845 alphafold2_multimer_v3_model_3_seed_000 took 155.0s (15 recycles)
2024-07-26 04:28:39,804 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=82.9 pTM=0.727 ipTM=0.244
2024-07-26 04:28:49,440 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=87.2 pTM=0.793 ipTM=0.652 tol=9.75
2024-07-26 04:28:59,076 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85.9 pTM=0.763 ipTM=0.49 tol=1.33
2024-07-26 04:29:08,714 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85 pTM=0.763 ipTM=0.427 tol=0.742
2024-07-26 04:29:18,356 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=84.8 pTM=0.759 ipTM=0.4 tol=0.673
2024-07-26 04:29:27,984 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=83.7 pTM=0.747 ipTM=0.303 tol=0.544
2024-07-26 04:29:37,642 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.5 pTM=0.755 ipTM=0.321 tol=0.814
2024-07-26 04:29:47,304 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.2 pTM=0.75 ipTM=0.29 tol=0.869
2024-07-26 04:29:56,988 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.1 pTM=0.745 ipTM=0.257 tol=2.06
2024-07-26 04:30:06,645 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84.1 pTM=0.747 ipTM=0.271 tol=0.694
2024-07-26 04:30:16,295 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84.6 pTM=0.752 ipTM=0.31 tol=1.25
2024-07-26 04:30:25,925 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.9 pTM=0.744 ipTM=0.292 tol=1.22
2024-07-26 04:30:35,587 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.8 pTM=0.745 ipTM=0.269 tol=0.829
2024-07-26 04:30:45,236 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=84.2 pTM=0.751 ipTM=0.31 tol=0.661
2024-07-26 04:30:54,862 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.9 pTM=0.743 ipTM=0.283 tol=0.683
2024-07-26 04:31:04,501 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=83.1 pTM=0.738 ipTM=0.258 tol=0.831
2024-07-26 04:31:14,152 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.6 pTM=0.741 ipTM=0.259 tol=0.761
2024-07-26 04:31:23,780 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=83.8 pTM=0.746 ipTM=0.281 tol=0.921
2024-07-26 04:31:33,416 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.9 pTM=0.743 ipTM=0.28 tol=0.455
2024-07-26 04:31:33,417 alphafold2_multimer_v3_model_4_seed_000 took 183.3s (18 recycles)
2024-07-26 04:31:43,417 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=84.8 pTM=0.738 ipTM=0.37
2024-07-26 04:31:53,130 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.1 pTM=0.724 ipTM=0.224 tol=8.98
2024-07-26 04:32:02,852 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=86.5 pTM=0.755 ipTM=0.407 tol=3.26
2024-07-26 04:32:12,586 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=85.9 pTM=0.731 ipTM=0.204 tol=2.74
2024-07-26 04:32:22,322 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.9 pTM=0.73 ipTM=0.198 tol=2.61
2024-07-26 04:32:32,064 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.8 pTM=0.73 ipTM=0.216 tol=1.49
2024-07-26 04:32:41,798 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.8 pTM=0.724 ipTM=0.186 tol=0.641
2024-07-26 04:32:51,542 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.9 pTM=0.726 ipTM=0.18 tol=0.541
2024-07-26 04:33:01,277 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.8 pTM=0.723 ipTM=0.17 tol=0.702
2024-07-26 04:33:10,993 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=85.3 pTM=0.723 ipTM=0.193 tol=0.596
2024-07-26 04:33:20,752 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=85.4 pTM=0.717 ipTM=0.155 tol=1.65
2024-07-26 04:33:30,500 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=85.2 pTM=0.723 ipTM=0.167 tol=1.48
2024-07-26 04:33:40,236 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=86.8 pTM=0.778 ipTM=0.457 tol=4.43
2024-07-26 04:33:49,977 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=85.8 pTM=0.726 ipTM=0.204 tol=2.36
2024-07-26 04:33:59,685 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=85 pTM=0.722 ipTM=0.172 tol=1.49
2024-07-26 04:34:09,421 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=85.1 pTM=0.72 ipTM=0.161 tol=1.54
2024-07-26 04:34:19,157 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=85.2 pTM=0.721 ipTM=0.153 tol=1.01
2024-07-26 04:34:28,873 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=86.1 pTM=0.756 ipTM=0.356 tol=3.65
2024-07-26 04:34:38,639 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=86.1 pTM=0.721 ipTM=0.154 tol=3.11
2024-07-26 04:34:48,360 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=85.1 pTM=0.724 ipTM=0.181 tol=1.78
2024-07-26 04:34:58,088 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=85.4 pTM=0.731 ipTM=0.215 tol=1.45
2024-07-26 04:35:07,826 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=85.4 pTM=0.73 ipTM=0.204 tol=1.25
2024-07-26 04:35:17,565 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=85.9 pTM=0.748 ipTM=0.297 tol=2.45
2024-07-26 04:35:27,312 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=85.6 pTM=0.727 ipTM=0.184 tol=2.39
2024-07-26 04:35:37,039 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=85.3 pTM=0.722 ipTM=0.167 tol=1.21
2024-07-26 04:35:46,767 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=85.1 pTM=0.717 ipTM=0.152 tol=1.67
2024-07-26 04:35:56,496 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=85.1 pTM=0.72 ipTM=0.154 tol=1.08
2024-07-26 04:36:06,249 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=86.1 pTM=0.75 ipTM=0.286 tol=3.66
2024-07-26 04:36:15,996 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=85.9 pTM=0.722 ipTM=0.177 tol=2.17
2024-07-26 04:36:25,708 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=85.3 pTM=0.721 ipTM=0.16 tol=1.44
2024-07-26 04:36:35,441 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=85.4 pTM=0.721 ipTM=0.16 tol=2.3
2024-07-26 04:36:35,442 alphafold2_multimer_v3_model_5_seed_000 took 301.7s (30 recycles)
2024-07-26 04:36:35,753 reranking models by 'multimer' metric
2024-07-26 04:36:36,779 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 04:36:58,504 Relaxation took 22.8s
2024-07-26 04:36:58,504 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.9 pTM=0.748 ipTM=0.29
2024-07-26 04:37:44,223 Relaxation took 45.7s
2024-07-26 04:37:44,223 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.9 pTM=0.743 ipTM=0.28
2024-07-26 04:38:02,724 Relaxation took 18.5s
2024-07-26 04:38:02,724 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=85.9 pTM=0.731 ipTM=0.239
2024-07-26 04:38:41,840 Relaxation took 39.1s
2024-07-26 04:38:41,840 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.6 pTM=0.721 ipTM=0.17
2024-07-26 04:39:28,282 Relaxation took 46.4s
2024-07-26 04:39:28,282 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.4 pTM=0.721 ipTM=0.16
2024-07-26 04:39:29,603 Done