2024-07-26 04:48:53,628 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 04:48:53,929 Running on GPU
2024-07-26 04:48:56,140 Found 6 citations for tools or databases
2024-07-26 04:48:56,140 Query 1/1: CKS1B_FBXL4 (length 700)
2024-07-26 04:48:56,597 Sleeping for 10s. Reason: PENDING
2024-07-26 04:49:07,009 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:49:16,433 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:49:23,871 Sleeping for 8s. Reason: RUNNING
2024-07-26 04:49:32,322 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:49:37,733 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:49:43,160 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:49:52,603 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:49:58,042 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:50:04,949 Sleeping for 5s. Reason: PENDING
2024-07-26 04:50:10,387 Sleeping for 5s. Reason: RUNNING
2024-07-26 04:50:15,816 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:50:26,236 Sleeping for 10s. Reason: RUNNING
2024-07-26 04:50:36,700 Sleeping for 7s. Reason: RUNNING
2024-07-26 04:50:44,188 Sleeping for 9s. Reason: RUNNING
2024-07-26 04:50:55,666 Setting max_seq=508, max_extra_seq=2048
2024-07-26 04:53:12,206 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.8 pTM=0.752 ipTM=0.126
2024-07-26 04:53:22,237 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.3 pTM=0.765 ipTM=0.269 tol=12.4
2024-07-26 04:53:32,247 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79 pTM=0.763 ipTM=0.287 tol=0.986
2024-07-26 04:53:42,258 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79 pTM=0.759 ipTM=0.239 tol=0.565
2024-07-26 04:53:52,305 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.6 pTM=0.766 ipTM=0.266 tol=0.981
2024-07-26 04:54:02,341 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.4 pTM=0.761 ipTM=0.221 tol=0.702
2024-07-26 04:54:12,379 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.8 pTM=0.766 ipTM=0.272 tol=0.632
2024-07-26 04:54:22,426 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.5 pTM=0.764 ipTM=0.242 tol=0.569
2024-07-26 04:54:32,476 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.4 pTM=0.765 ipTM=0.262 tol=0.546
2024-07-26 04:54:42,533 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.2 pTM=0.758 ipTM=0.205 tol=0.476
2024-07-26 04:54:42,533 alphafold2_multimer_v3_model_1_seed_000 took 222.0s (9 recycles)
2024-07-26 04:54:52,878 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.7 pTM=0.756 ipTM=0.222
2024-07-26 04:55:02,986 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.2 pTM=0.77 ipTM=0.304 tol=2.5
2024-07-26 04:55:13,100 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.4 pTM=0.773 ipTM=0.315 tol=2.33
2024-07-26 04:55:23,226 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.6 pTM=0.767 ipTM=0.239 tol=1.77
2024-07-26 04:55:33,328 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.6 pTM=0.77 ipTM=0.252 tol=1.18
2024-07-26 04:55:43,444 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=80 pTM=0.77 ipTM=0.234 tol=0.747
2024-07-26 04:55:53,559 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=80.1 pTM=0.771 ipTM=0.249 tol=0.676
2024-07-26 04:56:03,688 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=80.1 pTM=0.772 ipTM=0.246 tol=0.581
2024-07-26 04:56:13,816 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=80.1 pTM=0.774 ipTM=0.258 tol=0.425
2024-07-26 04:56:13,817 alphafold2_multimer_v3_model_2_seed_000 took 91.0s (8 recycles)
2024-07-26 04:56:24,185 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.2 pTM=0.761 ipTM=0.221
2024-07-26 04:56:34,304 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.9 pTM=0.775 ipTM=0.316 tol=4.35
2024-07-26 04:56:44,402 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.8 pTM=0.778 ipTM=0.359 tol=4.2
2024-07-26 04:56:54,470 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.5 pTM=0.771 ipTM=0.309 tol=1.51
2024-07-26 04:57:04,560 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.8 pTM=0.775 ipTM=0.318 tol=1.22
2024-07-26 04:57:14,677 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.9 pTM=0.777 ipTM=0.322 tol=0.941
2024-07-26 04:57:24,778 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.9 pTM=0.778 ipTM=0.329 tol=0.788
2024-07-26 04:57:34,901 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.9 pTM=0.777 ipTM=0.317 tol=1.5
2024-07-26 04:57:44,999 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.8 pTM=0.776 ipTM=0.318 tol=0.748
2024-07-26 04:57:55,120 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.9 pTM=0.776 ipTM=0.312 tol=1.91
2024-07-26 04:58:05,201 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.8 pTM=0.775 ipTM=0.325 tol=1.68
2024-07-26 04:58:15,313 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.9 pTM=0.775 ipTM=0.315 tol=1.87
2024-07-26 04:58:25,437 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.1 pTM=0.778 ipTM=0.33 tol=1.27
2024-07-26 04:58:35,560 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.1 pTM=0.778 ipTM=0.327 tol=0.997
2024-07-26 04:58:45,661 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.9 pTM=0.777 ipTM=0.325 tol=1.17
2024-07-26 04:58:55,777 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80 pTM=0.777 ipTM=0.319 tol=0.919
2024-07-26 04:59:05,887 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.9 pTM=0.777 ipTM=0.324 tol=0.791
2024-07-26 04:59:16,021 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.2 pTM=0.78 ipTM=0.325 tol=1.35
2024-07-26 04:59:26,132 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.1 pTM=0.778 ipTM=0.327 tol=1.17
2024-07-26 04:59:36,261 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.2 pTM=0.778 ipTM=0.315 tol=0.982
2024-07-26 04:59:46,366 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.1 pTM=0.777 ipTM=0.312 tol=1.2
2024-07-26 04:59:56,475 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.1 pTM=0.777 ipTM=0.314 tol=2.05
2024-07-26 05:00:06,604 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.2 pTM=0.778 ipTM=0.317 tol=2.07
2024-07-26 05:00:16,700 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.1 pTM=0.776 ipTM=0.303 tol=2.01
2024-07-26 05:00:26,809 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.1 pTM=0.777 ipTM=0.309 tol=1.24
2024-07-26 05:00:36,916 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=80 pTM=0.778 ipTM=0.322 tol=2.22
2024-07-26 05:00:47,054 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80.2 pTM=0.78 ipTM=0.329 tol=2.02
2024-07-26 05:00:57,133 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=80.1 pTM=0.776 ipTM=0.304 tol=2.47
2024-07-26 05:01:07,255 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.3 pTM=0.78 ipTM=0.324 tol=1.4
2024-07-26 05:01:17,364 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=80.1 pTM=0.778 ipTM=0.316 tol=2.02
2024-07-26 05:01:27,464 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.1 pTM=0.779 ipTM=0.319 tol=1.42
2024-07-26 05:01:27,465 alphafold2_multimer_v3_model_3_seed_000 took 313.3s (30 recycles)
2024-07-26 05:01:37,902 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.5 pTM=0.759 ipTM=0.167
2024-07-26 05:01:48,035 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.1 pTM=0.776 ipTM=0.308 tol=3.52
2024-07-26 05:01:58,158 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.2 pTM=0.783 ipTM=0.359 tol=1.46
2024-07-26 05:02:08,287 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.5 pTM=0.781 ipTM=0.34 tol=0.844
2024-07-26 05:02:18,400 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.4 pTM=0.784 ipTM=0.362 tol=0.769
2024-07-26 05:02:28,558 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.9 pTM=0.785 ipTM=0.348 tol=1.08
2024-07-26 05:02:38,733 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.9 pTM=0.788 ipTM=0.366 tol=1.09
2024-07-26 05:02:48,894 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80 pTM=0.785 ipTM=0.349 tol=0.915
2024-07-26 05:02:59,056 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.9 pTM=0.788 ipTM=0.364 tol=0.788
2024-07-26 05:03:09,176 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.6 pTM=0.783 ipTM=0.351 tol=1.1
2024-07-26 05:03:19,340 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.9 pTM=0.788 ipTM=0.371 tol=1.21
2024-07-26 05:03:29,491 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.9 pTM=0.786 ipTM=0.347 tol=0.7
2024-07-26 05:03:39,650 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80 pTM=0.789 ipTM=0.375 tol=0.604
2024-07-26 05:03:49,796 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.1 pTM=0.785 ipTM=0.348 tol=0.584
2024-07-26 05:03:59,951 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.9 pTM=0.789 ipTM=0.371 tol=1.04
2024-07-26 05:04:10,107 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.1 pTM=0.787 ipTM=0.356 tol=1.16
2024-07-26 05:04:20,250 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.9 pTM=0.787 ipTM=0.37 tol=0.776
2024-07-26 05:04:30,399 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.9 pTM=0.785 ipTM=0.351 tol=0.7
2024-07-26 05:04:40,556 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.9 pTM=0.789 ipTM=0.374 tol=0.612
2024-07-26 05:04:50,738 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.1 pTM=0.786 ipTM=0.352 tol=0.737
2024-07-26 05:05:00,874 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80 pTM=0.788 ipTM=0.37 tol=1.01
2024-07-26 05:05:11,036 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.2 pTM=0.787 ipTM=0.345 tol=0.806
2024-07-26 05:05:21,201 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=79.9 pTM=0.789 ipTM=0.367 tol=1.06
2024-07-26 05:05:31,359 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.1 pTM=0.784 ipTM=0.337 tol=1.32
2024-07-26 05:05:41,524 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80 pTM=0.79 ipTM=0.374 tol=0.709
2024-07-26 05:05:51,683 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.2 pTM=0.786 ipTM=0.357 tol=0.757
2024-07-26 05:06:01,852 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.1 pTM=0.791 ipTM=0.385 tol=0.638
2024-07-26 05:06:11,988 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80 pTM=0.786 ipTM=0.35 tol=0.922
2024-07-26 05:06:22,150 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80 pTM=0.79 ipTM=0.373 tol=1.43
2024-07-26 05:06:32,323 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.2 pTM=0.786 ipTM=0.348 tol=1.93
2024-07-26 05:06:42,483 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80 pTM=0.789 ipTM=0.368 tol=1.4
2024-07-26 05:06:42,484 alphafold2_multimer_v3_model_4_seed_000 took 314.7s (30 recycles)
2024-07-26 05:06:52,885 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=78.1 pTM=0.772 ipTM=0.332
2024-07-26 05:07:03,020 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.5 pTM=0.771 ipTM=0.309 tol=3.34
2024-07-26 05:07:13,162 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.4 pTM=0.77 ipTM=0.268 tol=1.61
2024-07-26 05:07:23,271 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.4 pTM=0.773 ipTM=0.29 tol=4.57
2024-07-26 05:07:33,378 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.7 pTM=0.772 ipTM=0.265 tol=1.13
2024-07-26 05:07:43,528 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80 pTM=0.776 ipTM=0.277 tol=0.984
2024-07-26 05:07:53,689 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.9 pTM=0.778 ipTM=0.282 tol=0.724
2024-07-26 05:08:03,826 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.8 pTM=0.778 ipTM=0.286 tol=0.61
2024-07-26 05:08:13,961 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.8 pTM=0.777 ipTM=0.28 tol=0.954
2024-07-26 05:08:24,101 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.8 pTM=0.778 ipTM=0.283 tol=1.21
2024-07-26 05:08:34,227 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.8 pTM=0.781 ipTM=0.317 tol=1.81
2024-07-26 05:08:44,339 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.6 pTM=0.781 ipTM=0.311 tol=1.09
2024-07-26 05:08:54,471 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.8 pTM=0.781 ipTM=0.312 tol=1.71
2024-07-26 05:09:04,610 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80 pTM=0.78 ipTM=0.3 tol=0.854
2024-07-26 05:09:14,743 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.8 pTM=0.777 ipTM=0.284 tol=0.779
2024-07-26 05:09:24,879 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.9 pTM=0.779 ipTM=0.291 tol=0.914
2024-07-26 05:09:34,986 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.7 pTM=0.776 ipTM=0.281 tol=1.21
2024-07-26 05:09:45,123 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80 pTM=0.778 ipTM=0.276 tol=0.785
2024-07-26 05:09:55,258 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.8 pTM=0.778 ipTM=0.282 tol=1.64
2024-07-26 05:10:05,401 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80 pTM=0.783 ipTM=0.315 tol=1.6
2024-07-26 05:10:15,534 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.1 pTM=0.783 ipTM=0.31 tol=1.46
2024-07-26 05:10:25,669 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.9 pTM=0.781 ipTM=0.303 tol=0.708
2024-07-26 05:10:35,837 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=80.2 pTM=0.784 ipTM=0.329 tol=1.04
2024-07-26 05:10:45,986 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.9 pTM=0.783 ipTM=0.323 tol=1.09
2024-07-26 05:10:56,123 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80 pTM=0.78 ipTM=0.304 tol=2.54
2024-07-26 05:11:06,258 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.9 pTM=0.777 ipTM=0.281 tol=0.892
2024-07-26 05:11:16,399 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.8 pTM=0.778 ipTM=0.285 tol=0.842
2024-07-26 05:11:26,527 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.6 pTM=0.779 ipTM=0.297 tol=0.645
2024-07-26 05:11:36,663 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.8 pTM=0.78 ipTM=0.294 tol=0.983
2024-07-26 05:11:46,794 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.8 pTM=0.78 ipTM=0.295 tol=0.969
2024-07-26 05:11:56,929 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=79.8 pTM=0.779 ipTM=0.29 tol=1.22
2024-07-26 05:11:56,930 alphafold2_multimer_v3_model_5_seed_000 took 314.1s (30 recycles)
2024-07-26 05:11:57,237 reranking models by 'multimer' metric
2024-07-26 05:11:58,163 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 05:13:25,137 Relaxation took 87.9s
2024-07-26 05:13:25,137 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80 pTM=0.789 ipTM=0.368
2024-07-26 05:14:02,964 Relaxation took 37.8s
2024-07-26 05:14:02,965 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.1 pTM=0.779 ipTM=0.319
2024-07-26 05:14:27,295 Relaxation took 24.3s
2024-07-26 05:14:27,295 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.8 pTM=0.779 ipTM=0.29
2024-07-26 05:15:09,629 Relaxation took 42.3s
2024-07-26 05:15:09,629 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.1 pTM=0.774 ipTM=0.258
2024-07-26 05:15:44,382 Relaxation took 34.8s
2024-07-26 05:15:44,382 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.2 pTM=0.758 ipTM=0.205
2024-07-26 05:15:45,699 Done