2024-07-26 09:51:05,399 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 09:51:07,040 Running on GPU
2024-07-26 09:51:11,343 Found 6 citations for tools or databases
2024-07-26 09:51:11,343 Query 1/1: ENC1_KLHL17 (length 1231)
2024-07-26 09:51:11,837 Sleeping for 8s. Reason: PENDING
2024-07-26 09:51:20,273 Sleeping for 5s. Reason: RUNNING
2024-07-26 09:51:25,678 Sleeping for 9s. Reason: RUNNING
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2024-07-26 09:52:25,657 Sleeping for 9s. Reason: RUNNING
2024-07-26 09:52:35,082 Sleeping for 9s. Reason: RUNNING
2024-07-26 09:52:44,501 Sleeping for 6s. Reason: RUNNING
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2024-07-26 09:53:01,346 Sleeping for 7s. Reason: RUNNING
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2024-07-26 09:53:17,187 Sleeping for 10s. Reason: RUNNING
2024-07-26 09:53:27,622 Sleeping for 6s. Reason: RUNNING
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2024-07-26 09:53:41,471 Sleeping for 6s. Reason: RUNNING
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2024-07-26 09:54:21,595 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:54:29,017 Sleeping for 8s. Reason: RUNNING
2024-07-26 09:54:37,456 Sleeping for 6s. Reason: RUNNING
2024-07-26 09:54:45,957 Sleeping for 9s. Reason: PENDING
2024-07-26 09:54:55,379 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:55:02,791 Sleeping for 10s. Reason: RUNNING
2024-07-26 09:55:13,216 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:55:20,663 Sleeping for 10s. Reason: RUNNING
2024-07-26 09:55:31,081 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:55:38,489 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:55:45,927 Sleeping for 9s. Reason: RUNNING
2024-07-26 09:55:55,349 Sleeping for 9s. Reason: RUNNING
2024-07-26 09:56:04,763 Sleeping for 6s. Reason: RUNNING
2024-07-26 09:56:11,191 Sleeping for 9s. Reason: RUNNING
2024-07-26 09:56:20,622 Sleeping for 8s. Reason: RUNNING
2024-07-26 09:56:29,048 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:56:36,468 Sleeping for 9s. Reason: RUNNING
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2024-07-26 09:56:51,328 Sleeping for 7s. Reason: RUNNING
2024-07-26 09:57:04,566 Setting max_seq=508, max_extra_seq=2048
2024-07-26 10:00:44,915 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=83.4 pTM=0.605 ipTM=0.587
2024-07-26 10:01:22,179 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=83.9 pTM=0.606 ipTM=0.595 tol=9.32
2024-07-26 10:01:59,589 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=83.9 pTM=0.608 ipTM=0.591 tol=3.57
2024-07-26 10:02:37,084 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=83.4 pTM=0.596 ipTM=0.569 tol=2.8
2024-07-26 10:03:14,683 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=84 pTM=0.596 ipTM=0.578 tol=2.77
2024-07-26 10:03:52,311 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=84.1 pTM=0.595 ipTM=0.579 tol=2.17
2024-07-26 10:04:29,995 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84 pTM=0.587 ipTM=0.574 tol=2.47
2024-07-26 10:05:07,713 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=83.9 pTM=0.584 ipTM=0.571 tol=1.74
2024-07-26 10:05:45,445 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=83.9 pTM=0.587 ipTM=0.565 tol=0.708
2024-07-26 10:06:23,193 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.9 pTM=0.583 ipTM=0.563 tol=0.898
2024-07-26 10:07:00,935 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=83.8 pTM=0.578 ipTM=0.562 tol=1.87
2024-07-26 10:07:38,716 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83.5 pTM=0.577 ipTM=0.555 tol=1.54
2024-07-26 10:08:16,360 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=83.6 pTM=0.578 ipTM=0.55 tol=0.742
2024-07-26 10:08:53,751 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=83.8 pTM=0.58 ipTM=0.559 tol=0.754
2024-07-26 10:09:31,007 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=83.7 pTM=0.578 ipTM=0.562 tol=1.31
2024-07-26 10:10:08,198 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=83.6 pTM=0.576 ipTM=0.56 tol=1.57
2024-07-26 10:10:45,405 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=83.6 pTM=0.57 ipTM=0.555 tol=0.688
2024-07-26 10:11:22,620 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=83.5 pTM=0.571 ipTM=0.544 tol=1.67
2024-07-26 10:11:59,825 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=83.4 pTM=0.57 ipTM=0.55 tol=1.05
2024-07-26 10:12:37,095 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=83.8 pTM=0.584 ipTM=0.558 tol=1.35
2024-07-26 10:13:14,432 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=83.6 pTM=0.576 ipTM=0.555 tol=0.86
2024-07-26 10:13:51,838 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=83.5 pTM=0.572 ipTM=0.554 tol=1.38
2024-07-26 10:14:29,331 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=83.6 pTM=0.577 ipTM=0.551 tol=3.93
2024-07-26 10:15:06,905 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=83.3 pTM=0.57 ipTM=0.547 tol=3.22
2024-07-26 10:15:44,561 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=83.4 pTM=0.574 ipTM=0.55 tol=1.17
2024-07-26 10:16:22,293 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=83.2 pTM=0.571 ipTM=0.543 tol=1.49
2024-07-26 10:17:00,050 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=83.3 pTM=0.57 ipTM=0.541 tol=0.939
2024-07-26 10:17:37,805 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=83.2 pTM=0.569 ipTM=0.54 tol=1.04
2024-07-26 10:18:15,557 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=83.4 pTM=0.576 ipTM=0.547 tol=1.67
2024-07-26 10:18:53,297 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=83.4 pTM=0.578 ipTM=0.544 tol=3.08
2024-07-26 10:19:31,043 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=83.5 pTM=0.574 ipTM=0.548 tol=2.08
2024-07-26 10:19:31,044 alphafold2_multimer_v3_model_1_seed_000 took 1343.1s (30 recycles)
2024-07-26 10:20:09,842 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=84.1 pTM=0.622 ipTM=0.611
2024-07-26 10:20:47,692 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85 pTM=0.634 ipTM=0.614 tol=9.14
2024-07-26 10:21:25,463 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.4 pTM=0.617 ipTM=0.585 tol=4.92
2024-07-26 10:22:03,230 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.1 pTM=0.615 ipTM=0.581 tol=3.4
2024-07-26 10:22:40,988 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.608 ipTM=0.578 tol=5.32
2024-07-26 10:23:18,752 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.1 pTM=0.609 ipTM=0.58 tol=4.45
2024-07-26 10:23:56,517 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=83.9 pTM=0.604 ipTM=0.571 tol=4.71
2024-07-26 10:24:34,279 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=83.9 pTM=0.602 ipTM=0.564 tol=2.94
2024-07-26 10:25:12,078 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=83.8 pTM=0.606 ipTM=0.57 tol=3.67
2024-07-26 10:25:49,886 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=83.7 pTM=0.604 ipTM=0.567 tol=1.08
2024-07-26 10:26:27,663 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=83.9 pTM=0.604 ipTM=0.566 tol=2.36
2024-07-26 10:27:05,402 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=83.8 pTM=0.606 ipTM=0.572 tol=2.5
2024-07-26 10:27:43,123 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=83.4 pTM=0.604 ipTM=0.562 tol=1.06
2024-07-26 10:28:20,874 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=83.8 pTM=0.604 ipTM=0.571 tol=2.04
2024-07-26 10:28:58,634 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=83.8 pTM=0.604 ipTM=0.573 tol=0.722
2024-07-26 10:29:36,365 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=83.4 pTM=0.6 ipTM=0.562 tol=1.12
2024-07-26 10:30:14,127 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=83.7 pTM=0.602 ipTM=0.567 tol=0.461
2024-07-26 10:30:14,128 alphafold2_multimer_v3_model_2_seed_000 took 642.2s (16 recycles)
2024-07-26 10:30:53,042 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=84.1 pTM=0.674 ipTM=0.659
2024-07-26 10:31:30,910 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=84.8 pTM=0.686 ipTM=0.674 tol=7.72
2024-07-26 10:32:08,748 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=84.5 pTM=0.661 ipTM=0.636 tol=7.77
2024-07-26 10:32:46,590 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=84.9 pTM=0.659 ipTM=0.627 tol=2.25
2024-07-26 10:33:24,446 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=84.9 pTM=0.663 ipTM=0.636 tol=1.41
2024-07-26 10:34:02,318 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=84.7 pTM=0.649 ipTM=0.627 tol=5.27
2024-07-26 10:34:40,167 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=84.4 pTM=0.637 ipTM=0.616 tol=0.73
2024-07-26 10:35:18,055 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=84.4 pTM=0.633 ipTM=0.606 tol=0.856
2024-07-26 10:35:55,947 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=84.3 pTM=0.636 ipTM=0.606 tol=0.659
2024-07-26 10:36:33,835 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=84.2 pTM=0.632 ipTM=0.596 tol=2.22
2024-07-26 10:37:11,716 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=84.3 pTM=0.633 ipTM=0.604 tol=1.83
2024-07-26 10:37:49,588 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=84 pTM=0.627 ipTM=0.594 tol=4.41
2024-07-26 10:38:27,444 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=84.2 pTM=0.634 ipTM=0.597 tol=5.47
2024-07-26 10:39:05,291 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=84.1 pTM=0.628 ipTM=0.596 tol=5.96
2024-07-26 10:39:43,121 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=84.1 pTM=0.626 ipTM=0.597 tol=1.1
2024-07-26 10:40:20,948 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=83.8 pTM=0.623 ipTM=0.583 tol=1.03
2024-07-26 10:40:58,772 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=83.2 pTM=0.628 ipTM=0.581 tol=5.59
2024-07-26 10:41:36,580 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=83.6 pTM=0.621 ipTM=0.57 tol=3.59
2024-07-26 10:42:14,362 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=83.4 pTM=0.618 ipTM=0.569 tol=1.25
2024-07-26 10:42:52,155 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=83.5 pTM=0.624 ipTM=0.575 tol=1.12
2024-07-26 10:43:29,959 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=83.6 pTM=0.625 ipTM=0.578 tol=1.94
2024-07-26 10:44:07,808 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=83.5 pTM=0.632 ipTM=0.584 tol=4.45
2024-07-26 10:44:45,620 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=82.6 pTM=0.604 ipTM=0.54 tol=1.78
2024-07-26 10:45:23,436 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=83 pTM=0.621 ipTM=0.554 tol=0.735
2024-07-26 10:46:01,278 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=83.1 pTM=0.614 ipTM=0.547 tol=1.51
2024-07-26 10:46:39,123 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=83.2 pTM=0.618 ipTM=0.556 tol=1.12
2024-07-26 10:47:16,965 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=82.9 pTM=0.61 ipTM=0.547 tol=1.33
2024-07-26 10:47:54,785 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=82.6 pTM=0.606 ipTM=0.527 tol=2.41
2024-07-26 10:48:32,595 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=82.9 pTM=0.624 ipTM=0.545 tol=1.2
2024-07-26 10:49:10,396 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=82.8 pTM=0.609 ipTM=0.536 tol=2.12
2024-07-26 10:49:48,197 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=82.9 pTM=0.613 ipTM=0.546 tol=0.466
2024-07-26 10:49:48,198 alphafold2_multimer_v3_model_3_seed_000 took 1173.1s (30 recycles)
2024-07-26 10:50:26,951 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.6 pTM=0.662 ipTM=0.625
2024-07-26 10:51:04,865 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=85.2 pTM=0.683 ipTM=0.641 tol=5.54
2024-07-26 10:51:42,796 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=85.4 pTM=0.68 ipTM=0.636 tol=2.83
2024-07-26 10:52:20,722 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.6 pTM=0.683 ipTM=0.642 tol=0.905
2024-07-26 10:52:58,666 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.9 pTM=0.682 ipTM=0.645 tol=0.391
2024-07-26 10:52:58,667 alphafold2_multimer_v3_model_4_seed_000 took 189.6s (4 recycles)
2024-07-26 10:53:37,490 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=82.6 pTM=0.61 ipTM=0.571
2024-07-26 10:54:15,360 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=84.5 pTM=0.668 ipTM=0.656 tol=11.5
2024-07-26 10:54:53,253 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=84.2 pTM=0.642 ipTM=0.612 tol=5.48
2024-07-26 10:55:31,145 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=84.9 pTM=0.644 ipTM=0.612 tol=4.97
2024-07-26 10:56:09,004 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=85.1 pTM=0.659 ipTM=0.629 tol=2.9
2024-07-26 10:56:46,902 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85 pTM=0.654 ipTM=0.63 tol=0.964
2024-07-26 10:57:24,791 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=85.1 pTM=0.656 ipTM=0.63 tol=0.6
2024-07-26 10:58:02,657 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.1 pTM=0.653 ipTM=0.626 tol=2.17
2024-07-26 10:58:40,525 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.1 pTM=0.655 ipTM=0.627 tol=1.53
2024-07-26 10:59:18,393 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=85.1 pTM=0.655 ipTM=0.623 tol=1.49
2024-07-26 10:59:56,222 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=85.1 pTM=0.656 ipTM=0.632 tol=2.42
2024-07-26 11:00:34,068 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=85 pTM=0.652 ipTM=0.626 tol=0.358
2024-07-26 11:00:34,069 alphafold2_multimer_v3_model_5_seed_000 took 454.4s (11 recycles)
2024-07-26 11:00:35,050 reranking models by 'multimer' metric
2024-07-26 11:00:38,647 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 11:01:55,057 Relaxation took 80.0s
2024-07-26 11:01:55,057 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=85.9 pTM=0.682 ipTM=0.645
2024-07-26 11:03:40,061 Relaxation took 105.0s
2024-07-26 11:03:40,061 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85 pTM=0.652 ipTM=0.626
2024-07-26 11:05:30,192 Relaxation took 110.1s
2024-07-26 11:05:30,192 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.7 pTM=0.602 ipTM=0.567
2024-07-26 11:06:52,127 Relaxation took 81.9s
2024-07-26 11:06:52,127 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.9 pTM=0.613 ipTM=0.546
2024-07-26 11:07:36,583 Relaxation took 44.5s
2024-07-26 11:07:36,583 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.5 pTM=0.574 ipTM=0.548
2024-07-26 11:07:39,077 Done