2024-07-26 19:19:32,156 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 19:19:32,532 Running on GPU
2024-07-26 19:19:36,225 Found 6 citations for tools or databases
2024-07-26 19:19:36,225 Query 1/1: HTR3A_BTRC (length 1083)
2024-07-26 19:19:36,664 Sleeping for 7s. Reason: PENDING
2024-07-26 19:19:44,082 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:19:50,515 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:19:55,974 Sleeping for 8s. Reason: RUNNING
2024-07-26 19:20:04,425 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:20:09,872 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:20:17,292 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:20:24,723 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:20:30,144 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:20:37,566 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:20:44,008 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:20:49,437 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:20:54,859 Sleeping for 8s. Reason: RUNNING
2024-07-26 19:21:03,290 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:21:10,718 Sleeping for 8s. Reason: RUNNING
2024-07-26 19:21:19,137 Sleeping for 10s. Reason: RUNNING
2024-07-26 19:21:29,563 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:21:34,976 Sleeping for 10s. Reason: RUNNING
2024-07-26 19:21:45,393 Sleeping for 8s. Reason: RUNNING
2024-07-26 19:21:55,682 Sleeping for 9s. Reason: PENDING
2024-07-26 19:22:05,098 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:22:11,528 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:22:17,975 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:22:24,394 Sleeping for 8s. Reason: RUNNING
2024-07-26 19:22:32,843 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:22:39,268 Sleeping for 6s. Reason: RUNNING
2024-07-26 19:22:45,727 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:22:51,145 Sleeping for 10s. Reason: RUNNING
2024-07-26 19:23:01,553 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:23:06,990 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:23:14,411 Sleeping for 9s. Reason: RUNNING
2024-07-26 19:23:23,842 Sleeping for 5s. Reason: RUNNING
2024-07-26 19:23:29,264 Sleeping for 7s. Reason: RUNNING
2024-07-26 19:23:36,677 Sleeping for 10s. Reason: RUNNING
2024-07-26 19:23:51,633 Setting max_seq=508, max_extra_seq=2048
2024-07-26 19:28:06,884 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.8 pTM=0.433 ipTM=0.152
2024-07-26 19:28:37,636 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=72.9 pTM=0.424 ipTM=0.142 tol=11.2
2024-07-26 19:29:08,579 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.4 pTM=0.424 ipTM=0.134 tol=6.74
2024-07-26 19:29:39,581 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.3 pTM=0.424 ipTM=0.136 tol=6.89
2024-07-26 19:30:10,640 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.6 pTM=0.426 ipTM=0.137 tol=3.8
2024-07-26 19:30:41,690 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=73.8 pTM=0.427 ipTM=0.137 tol=3.1
2024-07-26 19:31:12,743 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=73.6 pTM=0.428 ipTM=0.136 tol=4.99
2024-07-26 19:31:43,839 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.7 pTM=0.427 ipTM=0.136 tol=4.65
2024-07-26 19:32:14,964 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=73.8 pTM=0.426 ipTM=0.136 tol=2.6
2024-07-26 19:32:46,133 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=73.8 pTM=0.426 ipTM=0.135 tol=2.61
2024-07-26 19:33:17,288 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=73.6 pTM=0.425 ipTM=0.136 tol=2.56
2024-07-26 19:33:48,448 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=73.8 pTM=0.425 ipTM=0.136 tol=2.82
2024-07-26 19:34:19,597 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=73.7 pTM=0.426 ipTM=0.135 tol=1.78
2024-07-26 19:34:50,764 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=73.7 pTM=0.427 ipTM=0.136 tol=1.46
2024-07-26 19:35:21,937 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=73.8 pTM=0.427 ipTM=0.136 tol=2.65
2024-07-26 19:35:53,101 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=73.6 pTM=0.427 ipTM=0.136 tol=2.74
2024-07-26 19:36:24,251 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=73.8 pTM=0.426 ipTM=0.136 tol=1.56
2024-07-26 19:36:55,435 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=73.8 pTM=0.426 ipTM=0.136 tol=5.34
2024-07-26 19:37:26,589 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=73.4 pTM=0.425 ipTM=0.136 tol=6.36
2024-07-26 19:37:57,773 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=73.4 pTM=0.426 ipTM=0.136 tol=4.12
2024-07-26 19:38:28,954 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=73.5 pTM=0.426 ipTM=0.136 tol=3.75
2024-07-26 19:39:00,150 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=73.6 pTM=0.426 ipTM=0.135 tol=5.73
2024-07-26 19:39:31,344 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=73.6 pTM=0.425 ipTM=0.138 tol=5.88
2024-07-26 19:40:02,542 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=73.5 pTM=0.426 ipTM=0.137 tol=4.47
2024-07-26 19:40:33,746 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=73.4 pTM=0.425 ipTM=0.137 tol=4.88
2024-07-26 19:41:04,952 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=73.3 pTM=0.426 ipTM=0.138 tol=5.95
2024-07-26 19:41:36,167 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=73.6 pTM=0.424 ipTM=0.135 tol=3.21
2024-07-26 19:42:07,359 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=73.6 pTM=0.425 ipTM=0.137 tol=5.37
2024-07-26 19:42:38,538 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=73.7 pTM=0.427 ipTM=0.139 tol=3.37
2024-07-26 19:43:09,719 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=73.6 pTM=0.427 ipTM=0.137 tol=3.96
2024-07-26 19:43:40,924 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=73.7 pTM=0.428 ipTM=0.137 tol=6.96
2024-07-26 19:43:40,925 alphafold2_multimer_v3_model_1_seed_000 took 1180.5s (30 recycles)
2024-07-26 19:44:12,969 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.8 pTM=0.449 ipTM=0.189
2024-07-26 19:44:44,155 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.4 pTM=0.434 ipTM=0.144 tol=8.6
2024-07-26 19:45:15,358 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.9 pTM=0.434 ipTM=0.138 tol=5.64
2024-07-26 19:45:46,625 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.2 pTM=0.437 ipTM=0.14 tol=6.22
2024-07-26 19:46:17,891 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73.8 pTM=0.439 ipTM=0.14 tol=4.16
2024-07-26 19:46:49,166 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.8 pTM=0.44 ipTM=0.139 tol=6.4
2024-07-26 19:47:20,410 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.9 pTM=0.441 ipTM=0.141 tol=3.15
2024-07-26 19:47:51,678 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=73.9 pTM=0.439 ipTM=0.138 tol=2.23
2024-07-26 19:48:22,939 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=73.9 pTM=0.44 ipTM=0.141 tol=1.62
2024-07-26 19:48:54,200 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=73.9 pTM=0.44 ipTM=0.141 tol=1.1
2024-07-26 19:49:25,457 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=73.8 pTM=0.441 ipTM=0.142 tol=1.73
2024-07-26 19:49:56,711 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=73.8 pTM=0.441 ipTM=0.142 tol=3.18
2024-07-26 19:50:27,955 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=73.9 pTM=0.442 ipTM=0.142 tol=1.88
2024-07-26 19:50:59,199 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.9 pTM=0.442 ipTM=0.143 tol=3.16
2024-07-26 19:51:30,442 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=73.8 pTM=0.441 ipTM=0.142 tol=2.2
2024-07-26 19:52:01,714 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=73.8 pTM=0.442 ipTM=0.142 tol=1.5
2024-07-26 19:52:32,984 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=73.9 pTM=0.441 ipTM=0.143 tol=1.75
2024-07-26 19:53:04,258 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=73.8 pTM=0.44 ipTM=0.141 tol=3.31
2024-07-26 19:53:35,531 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=73.6 pTM=0.439 ipTM=0.142 tol=1.66
2024-07-26 19:54:06,803 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=73.7 pTM=0.44 ipTM=0.142 tol=4.86
2024-07-26 19:54:38,068 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=73.8 pTM=0.441 ipTM=0.143 tol=2.52
2024-07-26 19:55:09,324 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=73.8 pTM=0.442 ipTM=0.142 tol=4.31
2024-07-26 19:55:40,625 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=73.8 pTM=0.441 ipTM=0.143 tol=4.97
2024-07-26 19:56:11,971 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=73.5 pTM=0.44 ipTM=0.144 tol=2.37
2024-07-26 19:56:43,287 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=73.6 pTM=0.44 ipTM=0.141 tol=4.07
2024-07-26 19:57:14,597 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=73.5 pTM=0.44 ipTM=0.141 tol=5.57
2024-07-26 19:57:45,891 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=73.7 pTM=0.44 ipTM=0.141 tol=1.94
2024-07-26 19:58:17,131 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=73.7 pTM=0.438 ipTM=0.141 tol=1.12
2024-07-26 19:58:48,368 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=73.7 pTM=0.44 ipTM=0.142 tol=1.09
2024-07-26 19:59:19,584 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=73.9 pTM=0.441 ipTM=0.141 tol=1.61
2024-07-26 19:59:50,800 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=73.9 pTM=0.441 ipTM=0.14 tol=1.28
2024-07-26 19:59:50,801 alphafold2_multimer_v3_model_2_seed_000 took 969.0s (30 recycles)
2024-07-26 20:00:22,883 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=71.5 pTM=0.447 ipTM=0.159
2024-07-26 20:00:54,043 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.6 pTM=0.449 ipTM=0.146 tol=19.2
2024-07-26 20:01:25,243 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.6 pTM=0.446 ipTM=0.14 tol=15.4
2024-07-26 20:01:56,443 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.6 pTM=0.446 ipTM=0.141 tol=6.39
2024-07-26 20:02:27,657 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.8 pTM=0.448 ipTM=0.14 tol=2.59
2024-07-26 20:02:58,831 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.9 pTM=0.448 ipTM=0.14 tol=3.62
2024-07-26 20:03:30,018 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73 pTM=0.448 ipTM=0.14 tol=3.45
2024-07-26 20:04:01,203 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73 pTM=0.449 ipTM=0.14 tol=2.87
2024-07-26 20:04:32,392 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=72.9 pTM=0.447 ipTM=0.143 tol=2.69
2024-07-26 20:05:03,584 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.1 pTM=0.447 ipTM=0.153 tol=1.73
2024-07-26 20:05:34,779 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.1 pTM=0.447 ipTM=0.159 tol=3.75
2024-07-26 20:06:05,959 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.2 pTM=0.447 ipTM=0.154 tol=1.86
2024-07-26 20:06:37,151 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.1 pTM=0.446 ipTM=0.146 tol=1.7
2024-07-26 20:07:08,358 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.1 pTM=0.447 ipTM=0.145 tol=1.23
2024-07-26 20:07:39,573 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=72.9 pTM=0.447 ipTM=0.148 tol=3.8
2024-07-26 20:08:10,786 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72.8 pTM=0.445 ipTM=0.145 tol=2.36
2024-07-26 20:08:41,974 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.1 pTM=0.445 ipTM=0.149 tol=2.82
2024-07-26 20:09:13,195 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.1 pTM=0.445 ipTM=0.158 tol=4.44
2024-07-26 20:09:44,430 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=72.9 pTM=0.445 ipTM=0.145 tol=4.27
2024-07-26 20:10:15,650 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=72.9 pTM=0.445 ipTM=0.145 tol=2.67
2024-07-26 20:10:46,907 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73.1 pTM=0.444 ipTM=0.152 tol=2.77
2024-07-26 20:11:18,136 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=72.9 pTM=0.446 ipTM=0.15 tol=1.04
2024-07-26 20:11:49,359 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73.1 pTM=0.446 ipTM=0.146 tol=1.29
2024-07-26 20:12:20,587 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=72.8 pTM=0.445 ipTM=0.144 tol=4.48
2024-07-26 20:12:51,825 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73 pTM=0.446 ipTM=0.154 tol=4.57
2024-07-26 20:13:23,053 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=72.9 pTM=0.446 ipTM=0.156 tol=1.3
2024-07-26 20:13:54,266 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=72.9 pTM=0.445 ipTM=0.146 tol=1.57
2024-07-26 20:14:25,468 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.8 pTM=0.444 ipTM=0.146 tol=4.03
2024-07-26 20:14:56,660 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=73.1 pTM=0.446 ipTM=0.154 tol=2.31
2024-07-26 20:15:27,864 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=72.9 pTM=0.445 ipTM=0.148 tol=1.57
2024-07-26 20:15:59,069 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=72.8 pTM=0.445 ipTM=0.149 tol=3.36
2024-07-26 20:15:59,070 alphafold2_multimer_v3_model_3_seed_000 took 967.4s (30 recycles)
2024-07-26 20:16:31,107 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71 pTM=0.454 ipTM=0.171
2024-07-26 20:17:02,320 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.1 pTM=0.454 ipTM=0.15 tol=8.9
2024-07-26 20:17:33,552 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=73.3 pTM=0.454 ipTM=0.154 tol=4.51
2024-07-26 20:18:04,812 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=73.1 pTM=0.455 ipTM=0.153 tol=3.54
2024-07-26 20:18:36,113 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.9 pTM=0.454 ipTM=0.153 tol=3.34
2024-07-26 20:19:07,404 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73 pTM=0.456 ipTM=0.157 tol=1.79
2024-07-26 20:19:38,693 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73 pTM=0.457 ipTM=0.158 tol=1.29
2024-07-26 20:20:09,985 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.1 pTM=0.458 ipTM=0.162 tol=3.66
2024-07-26 20:20:41,293 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.9 pTM=0.458 ipTM=0.164 tol=3.04
2024-07-26 20:21:12,572 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.1 pTM=0.458 ipTM=0.167 tol=1.87
2024-07-26 20:21:43,823 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=72.9 pTM=0.458 ipTM=0.165 tol=2.85
2024-07-26 20:22:15,027 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=72.9 pTM=0.458 ipTM=0.168 tol=2.34
2024-07-26 20:22:46,240 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.2 pTM=0.459 ipTM=0.168 tol=1.85
2024-07-26 20:23:17,433 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.2 pTM=0.458 ipTM=0.167 tol=2.33
2024-07-26 20:23:48,634 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.2 pTM=0.458 ipTM=0.166 tol=3.06
2024-07-26 20:24:19,808 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=72.6 pTM=0.457 ipTM=0.169 tol=1.47
2024-07-26 20:24:50,993 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=72.9 pTM=0.456 ipTM=0.163 tol=1.46
2024-07-26 20:25:22,163 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=72.9 pTM=0.456 ipTM=0.162 tol=4.49
2024-07-26 20:25:53,335 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.9 pTM=0.454 ipTM=0.162 tol=2.37
2024-07-26 20:26:24,520 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=73.1 pTM=0.455 ipTM=0.162 tol=2.53
2024-07-26 20:26:55,711 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73 pTM=0.454 ipTM=0.161 tol=1.53
2024-07-26 20:27:26,879 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.9 pTM=0.455 ipTM=0.162 tol=2.93
2024-07-26 20:27:58,051 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.9 pTM=0.455 ipTM=0.162 tol=3.14
2024-07-26 20:28:29,240 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73 pTM=0.453 ipTM=0.161 tol=1.38
2024-07-26 20:29:00,431 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=72.8 pTM=0.454 ipTM=0.164 tol=2.03
2024-07-26 20:29:31,641 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=72.8 pTM=0.453 ipTM=0.161 tol=1.62
2024-07-26 20:30:02,842 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=72.9 pTM=0.453 ipTM=0.161 tol=1.85
2024-07-26 20:30:34,035 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=73 pTM=0.453 ipTM=0.162 tol=1.51
2024-07-26 20:31:05,210 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.9 pTM=0.455 ipTM=0.166 tol=2.06
2024-07-26 20:31:36,387 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=73 pTM=0.456 ipTM=0.166 tol=1.3
2024-07-26 20:32:07,558 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=73 pTM=0.458 ipTM=0.167 tol=1.39
2024-07-26 20:32:07,559 alphafold2_multimer_v3_model_4_seed_000 took 967.6s (30 recycles)
2024-07-26 20:32:39,599 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.6 pTM=0.453 ipTM=0.164
2024-07-26 20:33:10,747 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.6 pTM=0.458 ipTM=0.153 tol=8.25
2024-07-26 20:33:41,956 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.7 pTM=0.454 ipTM=0.146 tol=6.84
2024-07-26 20:34:13,141 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.8 pTM=0.456 ipTM=0.148 tol=5.42
2024-07-26 20:34:44,352 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.1 pTM=0.454 ipTM=0.143 tol=6.87
2024-07-26 20:35:15,552 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.2 pTM=0.455 ipTM=0.146 tol=6.47
2024-07-26 20:35:46,760 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.2 pTM=0.456 ipTM=0.147 tol=2.04
2024-07-26 20:36:17,998 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.2 pTM=0.456 ipTM=0.146 tol=4.03
2024-07-26 20:36:49,208 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72.4 pTM=0.456 ipTM=0.147 tol=3.75
2024-07-26 20:37:20,418 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.1 pTM=0.456 ipTM=0.148 tol=2.53
2024-07-26 20:37:51,612 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.3 pTM=0.457 ipTM=0.148 tol=3.03
2024-07-26 20:38:22,809 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.2 pTM=0.457 ipTM=0.15 tol=5.56
2024-07-26 20:38:54,026 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=72.4 pTM=0.458 ipTM=0.15 tol=4.72
2024-07-26 20:39:25,254 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=72.3 pTM=0.458 ipTM=0.152 tol=1.67
2024-07-26 20:39:56,465 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=72.4 pTM=0.457 ipTM=0.15 tol=1.69
2024-07-26 20:40:27,678 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.9 pTM=0.457 ipTM=0.15 tol=1.28
2024-07-26 20:40:58,825 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=72.2 pTM=0.456 ipTM=0.149 tol=1.19
2024-07-26 20:41:29,982 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=71.9 pTM=0.456 ipTM=0.149 tol=1.56
2024-07-26 20:42:01,189 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=72.1 pTM=0.456 ipTM=0.147 tol=1.73
2024-07-26 20:42:32,329 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=72.2 pTM=0.457 ipTM=0.148 tol=2
2024-07-26 20:43:03,552 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=72.2 pTM=0.454 ipTM=0.147 tol=1.57
2024-07-26 20:43:34,760 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=72.1 pTM=0.457 ipTM=0.15 tol=2.24
2024-07-26 20:44:05,963 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=72.1 pTM=0.456 ipTM=0.149 tol=1.93
2024-07-26 20:44:37,159 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.2 pTM=0.457 ipTM=0.149 tol=3.93
2024-07-26 20:45:08,329 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=72 pTM=0.456 ipTM=0.149 tol=4.35
2024-07-26 20:45:39,507 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72 pTM=0.457 ipTM=0.148 tol=3.41
2024-07-26 20:46:10,668 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72.1 pTM=0.457 ipTM=0.152 tol=4.95
2024-07-26 20:46:41,828 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=72.1 pTM=0.455 ipTM=0.149 tol=5.46
2024-07-26 20:47:12,986 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72.2 pTM=0.455 ipTM=0.146 tol=3.67
2024-07-26 20:47:44,149 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72.1 pTM=0.456 ipTM=0.148 tol=4.02
2024-07-26 20:48:15,321 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.2 pTM=0.457 ipTM=0.15 tol=3.62
2024-07-26 20:48:15,322 alphafold2_multimer_v3_model_5_seed_000 took 966.9s (30 recycles)
2024-07-26 20:48:16,230 reranking models by 'multimer' metric
2024-07-26 20:48:19,692 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-26 20:49:30,415 Relaxation took 74.2s
2024-07-26 20:49:30,415 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73 pTM=0.458 ipTM=0.167
2024-07-26 20:50:50,244 Relaxation took 79.8s
2024-07-26 20:50:50,244 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.2 pTM=0.457 ipTM=0.15
2024-07-26 20:52:26,865 Relaxation took 96.6s
2024-07-26 20:52:26,865 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.8 pTM=0.445 ipTM=0.149
2024-07-26 20:53:38,638 Relaxation took 71.8s
2024-07-26 20:53:38,638 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73.9 pTM=0.441 ipTM=0.14
2024-07-26 20:54:49,550 Relaxation took 70.9s
2024-07-26 20:54:49,551 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.7 pTM=0.428 ipTM=0.137
2024-07-26 20:54:52,261 Done