2024-07-26 22:43:26,345 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-26 22:43:26,670 Running on GPU 2024-07-26 22:43:30,217 Found 6 citations for tools or databases 2024-07-26 22:43:30,217 Query 1/1: KLHL12_BTBD2 (length 1131) 2024-07-26 22:43:30,673 Sleeping for 6s. Reason: PENDING 2024-07-26 22:43:37,105 Sleeping for 10s. Reason: RUNNING 2024-07-26 22:43:47,529 Sleeping for 6s. Reason: RUNNING 2024-07-26 22:43:53,962 Sleeping for 6s. Reason: RUNNING 2024-07-26 22:44:00,397 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:44:08,823 Sleeping for 10s. Reason: RUNNING 2024-07-26 22:44:19,257 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:44:27,679 Sleeping for 7s. Reason: RUNNING 2024-07-26 22:44:35,087 Sleeping for 10s. Reason: RUNNING 2024-07-26 22:44:45,531 Sleeping for 6s. Reason: RUNNING 2024-07-26 22:44:51,968 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:44:57,407 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:45:05,832 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:45:14,276 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:45:19,715 Sleeping for 7s. Reason: RUNNING 2024-07-26 22:45:27,132 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:45:32,594 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:45:41,023 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:45:46,452 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:45:51,850 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:45:57,316 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:46:02,759 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:46:11,220 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:46:19,668 Sleeping for 6s. Reason: RUNNING 2024-07-26 22:46:26,107 Sleeping for 10s. Reason: RUNNING 2024-07-26 22:46:36,547 Sleeping for 9s. Reason: RUNNING 2024-07-26 22:46:45,958 Sleeping for 10s. Reason: RUNNING 2024-07-26 22:46:56,392 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:47:06,791 Sleeping for 6s. Reason: PENDING 2024-07-26 22:47:13,202 Sleeping for 9s. Reason: RUNNING 2024-07-26 22:47:22,628 Sleeping for 7s. Reason: RUNNING 2024-07-26 22:47:30,051 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:47:38,489 Sleeping for 6s. Reason: RUNNING 2024-07-26 22:47:44,921 Sleeping for 9s. Reason: RUNNING 2024-07-26 22:47:54,337 Sleeping for 5s. Reason: RUNNING 2024-07-26 22:47:59,761 Sleeping for 7s. Reason: RUNNING 2024-07-26 22:48:07,187 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:48:15,603 Sleeping for 9s. Reason: RUNNING 2024-07-26 22:48:25,024 Sleeping for 7s. Reason: RUNNING 2024-07-26 22:48:32,431 Sleeping for 9s. Reason: RUNNING 2024-07-26 22:48:41,864 Sleeping for 8s. Reason: RUNNING 2024-07-26 22:48:55,051 Setting max_seq=508, max_extra_seq=2048 2024-07-26 22:52:28,291 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.4 pTM=0.478 ipTM=0.377 2024-07-26 22:52:58,453 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.9 pTM=0.466 ipTM=0.335 tol=2.92 2024-07-26 22:53:28,773 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.4 pTM=0.422 ipTM=0.282 tol=2.75 2024-07-26 22:53:59,197 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.1 pTM=0.417 ipTM=0.26 tol=1.98 2024-07-26 22:54:29,697 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.4 pTM=0.415 ipTM=0.291 tol=2.18 2024-07-26 22:55:00,237 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.4 pTM=0.424 ipTM=0.297 tol=1.19 2024-07-26 22:55:30,863 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76.9 pTM=0.389 ipTM=0.253 tol=2.2 2024-07-26 22:56:01,486 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.2 pTM=0.413 ipTM=0.277 tol=1.98 2024-07-26 22:56:32,143 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=77.3 pTM=0.395 ipTM=0.257 tol=1.68 2024-07-26 22:57:02,788 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.9 pTM=0.391 ipTM=0.243 tol=0.879 2024-07-26 22:57:33,423 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=77.1 pTM=0.389 ipTM=0.259 tol=2.07 2024-07-26 22:58:04,076 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=77 pTM=0.389 ipTM=0.239 tol=2.47 2024-07-26 22:58:34,710 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=77.4 pTM=0.399 ipTM=0.258 tol=2.46 2024-07-26 22:59:05,312 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=76.9 pTM=0.391 ipTM=0.243 tol=1.54 2024-07-26 22:59:35,924 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=77.2 pTM=0.398 ipTM=0.26 tol=1.63 2024-07-26 23:00:06,545 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=77 pTM=0.389 ipTM=0.25 tol=3.09 2024-07-26 23:00:37,184 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=77.2 pTM=0.395 ipTM=0.235 tol=2.96 2024-07-26 23:01:07,792 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=77.2 pTM=0.398 ipTM=0.27 tol=1.9 2024-07-26 23:01:38,390 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=77.1 pTM=0.394 ipTM=0.247 tol=1.62 2024-07-26 23:02:08,998 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=77 pTM=0.393 ipTM=0.258 tol=1.31 2024-07-26 23:02:39,610 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=77.2 pTM=0.386 ipTM=0.243 tol=1.69 2024-07-26 23:03:10,251 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=76.6 pTM=0.389 ipTM=0.201 tol=3.57 2024-07-26 23:03:40,897 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=77 pTM=0.388 ipTM=0.247 tol=2.88 2024-07-26 23:04:11,522 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=76.9 pTM=0.393 ipTM=0.239 tol=2.11 2024-07-26 23:04:42,202 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=76.3 pTM=0.378 ipTM=0.17 tol=4.52 2024-07-26 23:05:12,842 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=76.9 pTM=0.395 ipTM=0.269 tol=3.4 2024-07-26 23:05:43,479 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=77.5 pTM=0.408 ipTM=0.279 tol=3.53 2024-07-26 23:06:14,164 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=76.4 pTM=0.386 ipTM=0.175 tol=5.11 2024-07-26 23:06:44,838 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=77.5 pTM=0.404 ipTM=0.291 tol=3.98 2024-07-26 23:07:15,524 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=77.1 pTM=0.406 ipTM=0.276 tol=2.59 2024-07-26 23:07:46,235 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=76.4 pTM=0.381 ipTM=0.185 tol=4.62 2024-07-26 23:07:46,236 alphafold2_multimer_v3_model_1_seed_000 took 1126.4s (30 recycles) 2024-07-26 23:08:17,661 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.2 pTM=0.444 ipTM=0.299 2024-07-26 23:08:48,396 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.8 pTM=0.424 ipTM=0.194 tol=15.2 2024-07-26 23:09:19,054 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.4 pTM=0.406 ipTM=0.218 tol=9.25 2024-07-26 23:09:49,786 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.4 pTM=0.408 ipTM=0.173 tol=7.09 2024-07-26 23:10:20,447 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.8 pTM=0.419 ipTM=0.225 tol=7.78 2024-07-26 23:10:51,065 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.5 pTM=0.429 ipTM=0.238 tol=3.05 2024-07-26 23:11:21,767 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.3 pTM=0.404 ipTM=0.183 tol=8.32 2024-07-26 23:11:52,409 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.4 pTM=0.411 ipTM=0.202 tol=6.14 2024-07-26 23:12:23,179 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.7 pTM=0.411 ipTM=0.179 tol=8.9 2024-07-26 23:12:53,882 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.2 pTM=0.402 ipTM=0.183 tol=6.79 2024-07-26 23:13:24,643 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=78.4 pTM=0.404 ipTM=0.179 tol=3.33 2024-07-26 23:13:55,344 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=78.5 pTM=0.407 ipTM=0.188 tol=2.85 2024-07-26 23:14:26,113 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=78.6 pTM=0.402 ipTM=0.172 tol=4.2 2024-07-26 23:14:56,782 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=78.4 pTM=0.418 ipTM=0.193 tol=5.75 2024-07-26 23:15:27,578 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=78.4 pTM=0.406 ipTM=0.174 tol=9.74 2024-07-26 23:15:58,256 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.4 pTM=0.403 ipTM=0.184 tol=8.15 2024-07-26 23:16:29,019 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.4 pTM=0.404 ipTM=0.182 tol=7.73 2024-07-26 23:16:59,735 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78.4 pTM=0.409 ipTM=0.184 tol=6.86 2024-07-26 23:17:30,480 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78.3 pTM=0.402 ipTM=0.179 tol=4.22 2024-07-26 23:18:01,174 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78.2 pTM=0.404 ipTM=0.178 tol=3.93 2024-07-26 23:18:31,877 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=78.3 pTM=0.406 ipTM=0.174 tol=2.54 2024-07-26 23:19:02,579 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.3 pTM=0.405 ipTM=0.175 tol=1.94 2024-07-26 23:19:33,281 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=78.3 pTM=0.403 ipTM=0.177 tol=1.88 2024-07-26 23:20:03,976 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.2 pTM=0.409 ipTM=0.177 tol=3.4 2024-07-26 23:20:34,698 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=78.4 pTM=0.402 ipTM=0.177 tol=1.99 2024-07-26 23:21:05,398 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=78.4 pTM=0.408 ipTM=0.181 tol=1.96 2024-07-26 23:21:36,096 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=77.3 pTM=0.402 ipTM=0.178 tol=10.8 2024-07-26 23:22:06,745 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=78.7 pTM=0.406 ipTM=0.224 tol=7.26 2024-07-26 23:22:37,487 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=78.5 pTM=0.414 ipTM=0.174 tol=10.4 2024-07-26 23:23:08,243 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=78.7 pTM=0.409 ipTM=0.183 tol=6.89 2024-07-26 23:23:38,908 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=78.6 pTM=0.411 ipTM=0.181 tol=8.52 2024-07-26 23:23:38,909 alphafold2_multimer_v3_model_2_seed_000 took 951.9s (30 recycles) 2024-07-26 23:24:10,335 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81 pTM=0.575 ipTM=0.542 2024-07-26 23:24:40,960 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.7 pTM=0.565 ipTM=0.52 tol=3.52 2024-07-26 23:25:11,563 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.6 pTM=0.56 ipTM=0.511 tol=1.84 2024-07-26 23:25:42,190 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.9 pTM=0.562 ipTM=0.521 tol=2.48 2024-07-26 23:26:12,813 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.7 pTM=0.56 ipTM=0.516 tol=1.4 2024-07-26 23:26:43,488 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.5 pTM=0.557 ipTM=0.511 tol=1.97 2024-07-26 23:27:14,219 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.4 pTM=0.558 ipTM=0.514 tol=1.36 2024-07-26 23:27:44,959 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.2 pTM=0.554 ipTM=0.507 tol=1.93 2024-07-26 23:28:15,687 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.6 pTM=0.561 ipTM=0.522 tol=1.39 2024-07-26 23:28:46,399 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=80.4 pTM=0.546 ipTM=0.503 tol=1.26 2024-07-26 23:29:17,138 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.4 pTM=0.556 ipTM=0.512 tol=2.32 2024-07-26 23:29:47,888 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=80.1 pTM=0.55 ipTM=0.504 tol=1.68 2024-07-26 23:30:18,617 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.4 pTM=0.56 ipTM=0.514 tol=1.17 2024-07-26 23:30:49,308 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.1 pTM=0.548 ipTM=0.499 tol=1.68 2024-07-26 23:31:20,006 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.4 pTM=0.555 ipTM=0.51 tol=1.53 2024-07-26 23:31:50,685 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=80.1 pTM=0.547 ipTM=0.495 tol=1.85 2024-07-26 23:32:21,372 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=80.6 pTM=0.557 ipTM=0.514 tol=2.26 2024-07-26 23:32:52,028 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=80.2 pTM=0.545 ipTM=0.495 tol=1.08 2024-07-26 23:33:22,691 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=80.6 pTM=0.55 ipTM=0.507 tol=2.36 2024-07-26 23:33:53,355 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=80.1 pTM=0.548 ipTM=0.498 tol=2.26 2024-07-26 23:34:24,022 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=80.4 pTM=0.547 ipTM=0.501 tol=2.45 2024-07-26 23:34:54,719 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=80.4 pTM=0.554 ipTM=0.508 tol=1.57 2024-07-26 23:35:25,438 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80.6 pTM=0.555 ipTM=0.514 tol=2.15 2024-07-26 23:35:56,157 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=80.3 pTM=0.553 ipTM=0.506 tol=1.69 2024-07-26 23:36:26,876 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=80.4 pTM=0.55 ipTM=0.505 tol=1.75 2024-07-26 23:36:57,590 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=80.4 pTM=0.551 ipTM=0.502 tol=1.63 2024-07-26 23:37:28,315 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=80.6 pTM=0.554 ipTM=0.514 tol=1.39 2024-07-26 23:37:59,035 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=80.4 pTM=0.55 ipTM=0.505 tol=1.78 2024-07-26 23:38:29,743 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=80.5 pTM=0.551 ipTM=0.506 tol=2.3 2024-07-26 23:39:00,453 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=80.3 pTM=0.552 ipTM=0.504 tol=3.06 2024-07-26 23:39:31,155 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=80.2 pTM=0.545 ipTM=0.494 tol=4.3 2024-07-26 23:39:31,156 alphafold2_multimer_v3_model_3_seed_000 took 951.5s (30 recycles) 2024-07-26 23:40:02,653 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=79.2 pTM=0.491 ipTM=0.39 2024-07-26 23:40:33,381 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.2 pTM=0.465 ipTM=0.36 tol=5.93 2024-07-26 23:41:04,084 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.3 pTM=0.475 ipTM=0.35 tol=2.96 2024-07-26 23:41:34,787 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.4 pTM=0.47 ipTM=0.357 tol=2.41 2024-07-26 23:42:05,471 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.2 pTM=0.478 ipTM=0.365 tol=1.67 2024-07-26 23:42:36,153 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.2 pTM=0.472 ipTM=0.366 tol=0.954 2024-07-26 23:43:06,801 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79 pTM=0.473 ipTM=0.365 tol=1.53 2024-07-26 23:43:37,469 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.1 pTM=0.476 ipTM=0.373 tol=4.79 2024-07-26 23:44:08,120 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.1 pTM=0.477 ipTM=0.37 tol=4.8 2024-07-26 23:44:38,784 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.9 pTM=0.458 ipTM=0.347 tol=1.75 2024-07-26 23:45:09,459 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.9 pTM=0.466 ipTM=0.356 tol=2.17 2024-07-26 23:45:40,139 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.1 pTM=0.468 ipTM=0.356 tol=1.13 2024-07-26 23:46:10,832 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.8 pTM=0.462 ipTM=0.347 tol=1.17 2024-07-26 23:46:41,536 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.9 pTM=0.458 ipTM=0.34 tol=2.29 2024-07-26 23:47:12,246 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=78.6 pTM=0.453 ipTM=0.337 tol=1.62 2024-07-26 23:47:42,977 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=78.8 pTM=0.455 ipTM=0.338 tol=0.844 2024-07-26 23:48:13,714 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=78.7 pTM=0.454 ipTM=0.332 tol=1.36 2024-07-26 23:48:44,456 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=78.8 pTM=0.46 ipTM=0.347 tol=1.48 2024-07-26 23:49:15,190 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=78.6 pTM=0.46 ipTM=0.347 tol=0.876 2024-07-26 23:49:45,953 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=78.4 pTM=0.457 ipTM=0.337 tol=1.09 2024-07-26 23:50:16,713 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=78.3 pTM=0.447 ipTM=0.326 tol=1.7 2024-07-26 23:50:47,482 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=78.4 pTM=0.452 ipTM=0.326 tol=1.68 2024-07-26 23:51:18,257 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=78.4 pTM=0.448 ipTM=0.312 tol=1.44 2024-07-26 23:51:49,019 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=78.6 pTM=0.453 ipTM=0.328 tol=1.97 2024-07-26 23:52:19,752 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=78.3 pTM=0.451 ipTM=0.32 tol=1.97 2024-07-26 23:52:50,486 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=78.8 pTM=0.468 ipTM=0.349 tol=1.68 2024-07-26 23:53:21,233 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=78.6 pTM=0.453 ipTM=0.329 tol=1.7 2024-07-26 23:53:51,980 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.8 pTM=0.451 ipTM=0.329 tol=1.82 2024-07-26 23:54:22,702 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=78.4 pTM=0.447 ipTM=0.321 tol=1.42 2024-07-26 23:54:53,459 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=78.5 pTM=0.455 ipTM=0.333 tol=1.06 2024-07-26 23:55:24,187 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.5 pTM=0.458 ipTM=0.345 tol=1.38 2024-07-26 23:55:24,188 alphafold2_multimer_v3_model_4_seed_000 took 952.3s (30 recycles) 2024-07-26 23:55:55,735 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.4 pTM=0.531 ipTM=0.473 2024-07-26 23:56:26,435 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.8 pTM=0.545 ipTM=0.508 tol=12.1 2024-07-26 23:56:57,137 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.8 pTM=0.556 ipTM=0.513 tol=4.43 2024-07-26 23:57:27,845 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.9 pTM=0.549 ipTM=0.517 tol=2.35 2024-07-26 23:57:58,541 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.7 pTM=0.553 ipTM=0.513 tol=6.64 2024-07-26 23:58:29,254 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.8 pTM=0.549 ipTM=0.51 tol=1.83 2024-07-26 23:58:59,923 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.6 pTM=0.549 ipTM=0.509 tol=1.48 2024-07-26 23:59:30,635 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.543 ipTM=0.498 tol=4.73 2024-07-27 00:00:01,335 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.6 pTM=0.546 ipTM=0.505 tol=3.46 2024-07-27 00:00:32,018 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.6 pTM=0.536 ipTM=0.49 tol=4.31 2024-07-27 00:01:02,718 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.5 pTM=0.542 ipTM=0.495 tol=3.38 2024-07-27 00:01:33,448 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.5 pTM=0.532 ipTM=0.488 tol=4.74 2024-07-27 00:02:04,139 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.3 pTM=0.537 ipTM=0.488 tol=4.49 2024-07-27 00:02:34,829 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.3 pTM=0.537 ipTM=0.486 tol=6.02 2024-07-27 00:03:05,550 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.3 pTM=0.537 ipTM=0.49 tol=5.97 2024-07-27 00:03:36,261 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.2 pTM=0.535 ipTM=0.483 tol=1.53 2024-07-27 00:04:06,968 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.4 pTM=0.538 ipTM=0.487 tol=3.82 2024-07-27 00:04:37,656 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=79.2 pTM=0.532 ipTM=0.482 tol=3.34 2024-07-27 00:05:08,337 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=79.2 pTM=0.539 ipTM=0.489 tol=5.05 2024-07-27 00:05:39,003 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79.2 pTM=0.536 ipTM=0.483 tol=2.18 2024-07-27 00:06:09,692 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79 pTM=0.53 ipTM=0.477 tol=5.93 2024-07-27 00:06:40,367 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.4 pTM=0.539 ipTM=0.486 tol=2.72 2024-07-27 00:07:11,070 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.2 pTM=0.537 ipTM=0.482 tol=2.67 2024-07-27 00:07:41,771 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.3 pTM=0.534 ipTM=0.48 tol=3.39 2024-07-27 00:08:12,485 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78.8 pTM=0.533 ipTM=0.475 tol=2.32 2024-07-27 00:08:43,213 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.2 pTM=0.535 ipTM=0.478 tol=3.34 2024-07-27 00:09:13,940 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=79.1 pTM=0.537 ipTM=0.483 tol=5.19 2024-07-27 00:09:44,653 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=79.2 pTM=0.528 ipTM=0.473 tol=3.81 2024-07-27 00:10:15,362 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=79.2 pTM=0.541 ipTM=0.48 tol=2.43 2024-07-27 00:10:46,066 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.2 pTM=0.533 ipTM=0.478 tol=5.56 2024-07-27 00:11:16,764 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=78.9 pTM=0.532 ipTM=0.47 tol=2.29 2024-07-27 00:11:16,765 alphafold2_multimer_v3_model_5_seed_000 took 951.8s (30 recycles) 2024-07-27 00:11:17,535 reranking models by 'multimer' metric 2024-07-27 00:11:20,858 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-27 00:12:38,397 Relaxation took 80.9s 2024-07-27 00:12:38,398 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.2 pTM=0.545 ipTM=0.494 2024-07-27 00:13:22,153 Relaxation took 43.8s 2024-07-27 00:13:22,154 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.9 pTM=0.532 ipTM=0.47 2024-07-27 00:14:23,984 Relaxation took 61.8s 2024-07-27 00:14:23,984 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.5 pTM=0.458 ipTM=0.345 2024-07-27 00:16:14,080 Relaxation took 110.1s 2024-07-27 00:16:14,080 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.6 pTM=0.411 ipTM=0.181 2024-07-27 00:18:53,277 Relaxation took 159.2s 2024-07-27 00:18:53,277 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.4 pTM=0.381 ipTM=0.185 2024-07-27 00:18:55,512 Done