2024-07-26 23:28:59,106 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-26 23:28:59,428 Running on GPU
2024-07-26 23:29:03,039 Found 6 citations for tools or databases
2024-07-26 23:29:03,039 Query 1/1: LBP_FBXW12 (length 941)
2024-07-26 23:29:06,900 Setting max_seq=508, max_extra_seq=2048
2024-07-26 23:32:43,663 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79 pTM=0.495 ipTM=0.124
2024-07-26 23:33:03,560 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.7 pTM=0.498 ipTM=0.131 tol=7.07
2024-07-26 23:33:23,500 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.6 pTM=0.495 ipTM=0.14 tol=6.77
2024-07-26 23:33:43,478 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.7 pTM=0.5 ipTM=0.141 tol=7.41
2024-07-26 23:34:03,475 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.4 pTM=0.505 ipTM=0.14 tol=2.38
2024-07-26 23:34:23,502 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.5 pTM=0.507 ipTM=0.142 tol=1.33
2024-07-26 23:34:43,526 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.8 pTM=0.512 ipTM=0.146 tol=1.4
2024-07-26 23:35:03,600 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=81.3 pTM=0.516 ipTM=0.152 tol=8.22
2024-07-26 23:35:23,693 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.4 pTM=0.517 ipTM=0.155 tol=1.03
2024-07-26 23:35:43,790 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.3 pTM=0.52 ipTM=0.158 tol=1.37
2024-07-26 23:36:03,892 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.9 pTM=0.523 ipTM=0.164 tol=0.539
2024-07-26 23:36:23,982 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.2 pTM=0.525 ipTM=0.166 tol=1.35
2024-07-26 23:36:44,037 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=80.8 pTM=0.523 ipTM=0.165 tol=1.07
2024-07-26 23:37:04,109 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=81.5 pTM=0.525 ipTM=0.166 tol=0.912
2024-07-26 23:37:24,161 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=80.8 pTM=0.524 ipTM=0.166 tol=0.72
2024-07-26 23:37:44,202 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81.2 pTM=0.527 ipTM=0.171 tol=0.752
2024-07-26 23:38:04,269 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81.1 pTM=0.525 ipTM=0.167 tol=0.639
2024-07-26 23:38:24,326 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81.1 pTM=0.525 ipTM=0.167 tol=0.899
2024-07-26 23:38:44,391 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.3 pTM=0.526 ipTM=0.166 tol=1
2024-07-26 23:39:04,449 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81.2 pTM=0.525 ipTM=0.167 tol=0.393
2024-07-26 23:39:04,450 alphafold2_multimer_v3_model_1_seed_000 took 592.6s (19 recycles)
2024-07-26 23:39:25,083 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.2 pTM=0.54 ipTM=0.203
2024-07-26 23:39:45,205 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.5 pTM=0.525 ipTM=0.158 tol=4.62
2024-07-26 23:40:05,380 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.2 pTM=0.533 ipTM=0.173 tol=5.32
2024-07-26 23:40:25,576 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=82.2 pTM=0.528 ipTM=0.165 tol=3.94
2024-07-26 23:40:45,755 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=82.4 pTM=0.532 ipTM=0.173 tol=2.26
2024-07-26 23:41:05,934 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=82.3 pTM=0.53 ipTM=0.17 tol=1.11
2024-07-26 23:41:26,124 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=82.7 pTM=0.534 ipTM=0.176 tol=0.947
2024-07-26 23:41:46,292 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=82.7 pTM=0.534 ipTM=0.175 tol=8.62
2024-07-26 23:42:06,450 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=82.8 pTM=0.536 ipTM=0.178 tol=2.21
2024-07-26 23:42:26,615 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=82.9 pTM=0.537 ipTM=0.179 tol=0.525
2024-07-26 23:42:46,774 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=83.1 pTM=0.539 ipTM=0.181 tol=0.69
2024-07-26 23:43:06,951 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=83.2 pTM=0.538 ipTM=0.179 tol=0.219
2024-07-26 23:43:06,952 alphafold2_multimer_v3_model_2_seed_000 took 242.0s (11 recycles)
2024-07-26 23:43:27,644 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.3 pTM=0.502 ipTM=0.145
2024-07-26 23:43:47,760 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.6 pTM=0.559 ipTM=0.28 tol=9.76
2024-07-26 23:44:07,873 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.5 pTM=0.634 ipTM=0.48 tol=5.98
2024-07-26 23:44:27,990 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=82.4 pTM=0.556 ipTM=0.267 tol=4.1
2024-07-26 23:44:48,087 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=83.6 pTM=0.59 ipTM=0.354 tol=3.04
2024-07-26 23:45:08,167 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83.9 pTM=0.609 ipTM=0.404 tol=1.18
2024-07-26 23:45:28,242 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=83.6 pTM=0.608 ipTM=0.411 tol=0.743
2024-07-26 23:45:48,309 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=83.8 pTM=0.614 ipTM=0.415 tol=5.95
2024-07-26 23:46:08,392 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=83.9 pTM=0.621 ipTM=0.442 tol=0.395
2024-07-26 23:46:08,393 alphafold2_multimer_v3_model_3_seed_000 took 180.9s (8 recycles)
2024-07-26 23:46:29,089 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.9 pTM=0.505 ipTM=0.126
2024-07-26 23:46:49,250 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.4 pTM=0.512 ipTM=0.136 tol=18.4
2024-07-26 23:47:09,422 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.1 pTM=0.516 ipTM=0.143 tol=4.6
2024-07-26 23:47:29,590 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.7 pTM=0.516 ipTM=0.144 tol=6.82
2024-07-26 23:47:49,747 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.8 pTM=0.519 ipTM=0.147 tol=4.16
2024-07-26 23:48:09,913 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=81.1 pTM=0.52 ipTM=0.146 tol=4.57
2024-07-26 23:48:30,066 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=81.7 pTM=0.52 ipTM=0.147 tol=2.95
2024-07-26 23:48:50,217 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=81.8 pTM=0.522 ipTM=0.153 tol=1.97
2024-07-26 23:49:10,363 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=82.4 pTM=0.525 ipTM=0.154 tol=0.738
2024-07-26 23:49:30,503 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=82.4 pTM=0.525 ipTM=0.154 tol=0.734
2024-07-26 23:49:50,628 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=82.2 pTM=0.527 ipTM=0.158 tol=0.946
2024-07-26 23:50:10,767 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=82.5 pTM=0.524 ipTM=0.154 tol=1.12
2024-07-26 23:50:30,886 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=82.4 pTM=0.522 ipTM=0.154 tol=1.39
2024-07-26 23:50:50,994 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=82.2 pTM=0.523 ipTM=0.155 tol=0.737
2024-07-26 23:51:11,118 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=82.3 pTM=0.523 ipTM=0.154 tol=0.652
2024-07-26 23:51:31,241 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=82.4 pTM=0.523 ipTM=0.155 tol=0.792
2024-07-26 23:51:51,366 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=82.4 pTM=0.522 ipTM=0.153 tol=0.394
2024-07-26 23:51:51,366 alphafold2_multimer_v3_model_4_seed_000 took 342.4s (16 recycles)
2024-07-26 23:52:11,969 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.8 pTM=0.514 ipTM=0.302
2024-07-26 23:52:32,026 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.6 pTM=0.518 ipTM=0.183 tol=6.57
2024-07-26 23:52:52,120 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.7 pTM=0.502 ipTM=0.126 tol=7.9
2024-07-26 23:53:12,216 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.1 pTM=0.511 ipTM=0.14 tol=7.02
2024-07-26 23:53:32,322 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=79.4 pTM=0.516 ipTM=0.148 tol=6.56
2024-07-26 23:53:52,411 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=79.4 pTM=0.518 ipTM=0.155 tol=3.42
2024-07-26 23:54:12,501 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=79.4 pTM=0.526 ipTM=0.169 tol=3.93
2024-07-26 23:54:32,585 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79.6 pTM=0.528 ipTM=0.174 tol=2.83
2024-07-26 23:54:52,652 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=79.3 pTM=0.53 ipTM=0.18 tol=4.61
2024-07-26 23:55:12,686 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=79.1 pTM=0.531 ipTM=0.185 tol=1.23
2024-07-26 23:55:32,748 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=79.5 pTM=0.533 ipTM=0.186 tol=1.24
2024-07-26 23:55:52,803 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=79.2 pTM=0.531 ipTM=0.183 tol=1.21
2024-07-26 23:56:12,854 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=79.2 pTM=0.532 ipTM=0.187 tol=0.81
2024-07-26 23:56:32,904 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=79.1 pTM=0.533 ipTM=0.188 tol=1.11
2024-07-26 23:56:52,957 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=79.3 pTM=0.532 ipTM=0.188 tol=0.781
2024-07-26 23:57:13,002 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=79.1 pTM=0.532 ipTM=0.188 tol=1.06
2024-07-26 23:57:33,062 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79.5 pTM=0.532 ipTM=0.185 tol=1
2024-07-26 23:57:53,095 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.9 pTM=0.529 ipTM=0.184 tol=1.12
2024-07-26 23:58:13,143 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.9 pTM=0.53 ipTM=0.187 tol=1.23
2024-07-26 23:58:33,179 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78.7 pTM=0.527 ipTM=0.183 tol=0.541
2024-07-26 23:58:53,250 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79.1 pTM=0.53 ipTM=0.187 tol=0.686
2024-07-26 23:59:13,302 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.1 pTM=0.53 ipTM=0.187 tol=0.577
2024-07-26 23:59:33,346 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.2 pTM=0.532 ipTM=0.184 tol=0.863
2024-07-26 23:59:53,405 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.5 pTM=0.53 ipTM=0.185 tol=0.65
2024-07-27 00:00:13,448 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79.2 pTM=0.531 ipTM=0.186 tol=0.861
2024-07-27 00:00:33,499 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=79.5 pTM=0.531 ipTM=0.184 tol=0.344
2024-07-27 00:00:33,499 alphafold2_multimer_v3_model_5_seed_000 took 521.6s (25 recycles)
2024-07-27 00:00:34,044 reranking models by 'multimer' metric
2024-07-27 00:00:35,203 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-27 00:01:14,970 Relaxation took 40.9s
2024-07-27 00:01:14,971 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=83.9 pTM=0.621 ipTM=0.442
2024-07-27 00:01:53,664 Relaxation took 38.7s
2024-07-27 00:01:53,665 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.5 pTM=0.531 ipTM=0.184
2024-07-27 00:14:30,704 Relaxation took 757.0s
2024-07-27 00:14:30,705 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.2 pTM=0.538 ipTM=0.179
2024-07-27 00:15:32,954 Relaxation took 62.2s
2024-07-27 00:15:32,954 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.2 pTM=0.525 ipTM=0.167
2024-07-27 00:17:36,260 Relaxation took 123.3s
2024-07-27 00:17:36,260 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=82.4 pTM=0.522 ipTM=0.153
2024-07-27 00:17:38,120 Done